data_6VKS
#
_model_server_result.job_id            UyhqpGJYjXwk6cDe1TkKZA 
_model_server_result.datetime_utc      '2025-03-06 08:43:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vks 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1101}' 
#
_entry.id    6VKS 
#
_exptl.entry_id    6VKS 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              734.039 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHOSPHATIDYLETHANOLAMINE 
_entity.pdbx_number_of_molecules    17 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VKS 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VKS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
#
_chem_comp.formula           'C40 H80 N O8 P' 
_chem_comp.formula_weight    734.039 
_chem_comp.id                PTY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHOSPHATIDYLETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O4 PTY sing 321 n n 
C1 C6 PTY sing 322 n n 
C1 HC11 PTY sing 323 n n 
C1 HC12 PTY sing 324 n n 
C2 C3 PTY sing 325 n n 
C2 N1 PTY sing 326 n n 
C2 HC21 PTY sing 327 n n 
C2 HC22 PTY sing 328 n n 
C3 O11 PTY sing 329 n n 
C3 HC31 PTY sing 330 n n 
C3 HC32 PTY sing 331 n n 
O4 C30 PTY sing 332 n n 
C5 C6 PTY sing 333 n n 
C5 O14 PTY sing 334 n n 
C5 HC51 PTY sing 335 n n 
C5 HC52 PTY sing 336 n n 
C6 O7 PTY sing 337 n n 
C6 HC6 PTY sing 338 n n 
O7 C8 PTY sing 339 n n 
C8 O10 PTY doub 340 n n 
C8 C11 PTY sing 341 n n 
C11 C12 PTY sing 342 n n 
C11 H111 PTY sing 343 n n 
C11 H112 PTY sing 344 n n 
C12 C13 PTY sing 345 n n 
C12 H121 PTY sing 346 n n 
C12 H122 PTY sing 347 n n 
C13 C14 PTY sing 348 n n 
C13 H131 PTY sing 349 n n 
C13 H132 PTY sing 350 n n 
C14 C15 PTY sing 351 n n 
C14 H141 PTY sing 352 n n 
C14 H142 PTY sing 353 n n 
C15 C16 PTY sing 354 n n 
C15 H151 PTY sing 355 n n 
C15 H152 PTY sing 356 n n 
C16 C17 PTY sing 357 n n 
C16 H161 PTY sing 358 n n 
C16 H162 PTY sing 359 n n 
C17 C18 PTY sing 360 n n 
C17 H171 PTY sing 361 n n 
C17 H172 PTY sing 362 n n 
C18 C19 PTY sing 363 n n 
C18 H181 PTY sing 364 n n 
C18 H182 PTY sing 365 n n 
C19 C20 PTY sing 366 n n 
C19 H191 PTY sing 367 n n 
C19 H192 PTY sing 368 n n 
C20 C21 PTY sing 369 n n 
C20 H201 PTY sing 370 n n 
C20 H202 PTY sing 371 n n 
C21 C22 PTY sing 372 n n 
C21 H211 PTY sing 373 n n 
C21 H212 PTY sing 374 n n 
C22 C23 PTY sing 375 n n 
C22 H221 PTY sing 376 n n 
C22 H222 PTY sing 377 n n 
C23 C24 PTY sing 378 n n 
C23 H231 PTY sing 379 n n 
C23 H232 PTY sing 380 n n 
C24 C25 PTY sing 381 n n 
C24 H241 PTY sing 382 n n 
C24 H242 PTY sing 383 n n 
C25 C26 PTY sing 384 n n 
C25 H251 PTY sing 385 n n 
C25 H252 PTY sing 386 n n 
C26 C27 PTY sing 387 n n 
C26 H261 PTY sing 388 n n 
C26 H262 PTY sing 389 n n 
C27 C28 PTY sing 390 n n 
C27 H271 PTY sing 391 n n 
C27 H272 PTY sing 392 n n 
C28 C29 PTY sing 393 n n 
C28 H281 PTY sing 394 n n 
C28 H282 PTY sing 395 n n 
C29 H291 PTY sing 396 n n 
C29 H292 PTY sing 397 n n 
C29 H293 PTY sing 398 n n 
C30 C31 PTY sing 399 n n 
C30 O30 PTY doub 400 n n 
C31 C32 PTY sing 401 n n 
C31 H311 PTY sing 402 n n 
C31 H312 PTY sing 403 n n 
C32 C33 PTY sing 404 n n 
C32 H321 PTY sing 405 n n 
C32 H322 PTY sing 406 n n 
C33 C34 PTY sing 407 n n 
C33 H331 PTY sing 408 n n 
C33 H332 PTY sing 409 n n 
C34 C35 PTY sing 410 n n 
C34 H341 PTY sing 411 n n 
C34 H342 PTY sing 412 n n 
C35 C36 PTY sing 413 n n 
C35 H351 PTY sing 414 n n 
C35 H352 PTY sing 415 n n 
C36 C37 PTY sing 416 n n 
C36 H361 PTY sing 417 n n 
C36 H362 PTY sing 418 n n 
C37 C38 PTY sing 419 n n 
C37 H371 PTY sing 420 n n 
C37 H372 PTY sing 421 n n 
C38 C39 PTY sing 422 n n 
C38 H381 PTY sing 423 n n 
C38 H382 PTY sing 424 n n 
C39 C40 PTY sing 425 n n 
C39 H391 PTY sing 426 n n 
C39 H392 PTY sing 427 n n 
C40 C41 PTY sing 428 n n 
C40 H401 PTY sing 429 n n 
C40 H402 PTY sing 430 n n 
C41 C42 PTY sing 431 n n 
C41 H411 PTY sing 432 n n 
C41 H412 PTY sing 433 n n 
C42 C43 PTY sing 434 n n 
C42 H421 PTY sing 435 n n 
C42 H422 PTY sing 436 n n 
C43 C44 PTY sing 437 n n 
C43 H431 PTY sing 438 n n 
C43 H432 PTY sing 439 n n 
C44 H441 PTY sing 440 n n 
C44 H442 PTY sing 441 n n 
C44 H443 PTY sing 442 n n 
P1 O11 PTY sing 443 n n 
P1 O12 PTY sing 444 n n 
P1 O13 PTY doub 445 n n 
P1 O14 PTY sing 446 n n 
O12 H12O PTY sing 447 n n 
N1 HN11 PTY sing 448 n n 
N1 HN12 PTY sing 449 n n 
#
_atom_sites.entry_id                     6VKS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 PTY A 1 1101 3 PTY PTY . 
E 2 PTY A 1 1102 9 PTY PTY . 
F 2 PTY A 1 1103 12 PTY PTY . 
G 2 PTY B 1 1101 6 PTY PTY . 
H 2 PTY B 1 1102 7 PTY PTY . 
I 2 PTY B 1 1103 8 PTY PTY . 
J 2 PTY B 1 1104 17 PTY PTY . 
K 2 PTY B 1 1105 18 PTY PTY . 
L 3 AIX B 1 1106 1 AIX LIG . 
M 2 PTY C 1 1101 1 PTY PTY . 
N 2 PTY C 1 1102 5 PTY PTY . 
O 2 PTY C 1 1103 11 PTY PTY . 
P 2 PTY C 1 1104 13 PTY PTY . 
Q 2 PTY C 1 1105 15 PTY PTY . 
R 2 PTY C 1 1106 16 PTY PTY . 
S 2 PTY C 1 1107 20 PTY PTY . 
T 2 PTY C 1 1108 21 PTY PTY . 
U 2 PTY C 1 1109 23 PTY PTY . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PTY . . . D 2 208.676 187.201 168.122 1 90.17 ? C1 PTY 1101 A 1 
HETATM 2 C C2 PTY . . . D 2 207.862 187.634 164.438 1 90.17 ? C2 PTY 1101 A 1 
HETATM 3 C C3 PTY . . . D 2 208.096 186.493 165.418 1 90.17 ? C3 PTY 1101 A 1 
HETATM 4 O O4 PTY . . . D 2 207.312 186.832 168.288 1 90.17 ? O4 PTY 1101 A 1 
HETATM 5 C C5 PTY . . . D 2 209.409 184.836 168.169 1 90.17 ? C5 PTY 1101 A 1 
HETATM 6 C C6 PTY . . . D 2 209.515 186.179 168.877 1 90.17 ? C6 PTY 1101 A 1 
HETATM 7 O O7 PTY . . . D 2 208.972 186.075 170.193 1 90.17 ? O7 PTY 1101 A 1 
HETATM 8 C C8 PTY . . . D 2 209.723 185.221 171.088 1 90.17 ? C8 PTY 1101 A 1 
HETATM 9 O O10 PTY . . . D 2 210.756 184.719 170.689 1 90.17 ? O10 PTY 1101 A 1 
HETATM 10 C C11 PTY . . . D 2 209.204 184.977 172.488 1 90.17 ? C11 PTY 1101 A 1 
HETATM 11 C C12 PTY . . . D 2 210.081 183.986 173.245 1 90.17 ? C12 PTY 1101 A 1 
HETATM 12 C C13 PTY . . . D 2 209.571 183.789 174.663 1 90.17 ? C13 PTY 1101 A 1 
HETATM 13 C C14 PTY . . . D 2 208.054 183.761 174.66 1 90.17 ? C14 PTY 1101 A 1 
HETATM 14 C C15 PTY . . . D 2 207.492 183.583 176.064 1 90.17 ? C15 PTY 1101 A 1 
HETATM 15 C C16 PTY . . . D 2 205.969 183.621 176.072 1 90.17 ? C16 PTY 1101 A 1 
HETATM 16 C C17 PTY . . . D 2 205.447 182.837 177.265 1 90.17 ? C17 PTY 1101 A 1 
HETATM 17 C C18 PTY . . . D 2 204.235 183.516 177.891 1 90.17 ? C18 PTY 1101 A 1 
HETATM 18 C C19 PTY . . . D 2 203.933 182.912 179.254 1 90.17 ? C19 PTY 1101 A 1 
HETATM 19 C C20 PTY . . . D 2 203.396 183.969 180.206 1 90.17 ? C20 PTY 1101 A 1 
HETATM 20 C C30 PTY . . . D 2 206.365 187.773 168.854 1 90.17 ? C30 PTY 1101 A 1 
HETATM 21 C C31 PTY . . . D 2 205.96 187.636 170.304 1 90.17 ? C31 PTY 1101 A 1 
HETATM 22 O O30 PTY . . . D 2 205.9 188.653 168.152 1 90.17 ? O30 PTY 1101 A 1 
HETATM 23 C C32 PTY . . . D 2 207.067 188.201 171.189 1 90.17 ? C32 PTY 1101 A 1 
HETATM 24 C C33 PTY . . . D 2 206.949 187.761 172.643 1 90.17 ? C33 PTY 1101 A 1 
HETATM 25 C C34 PTY . . . D 2 205.505 187.74 173.113 1 90.17 ? C34 PTY 1101 A 1 
HETATM 26 C C35 PTY . . . D 2 204.73 188.929 172.571 1 90.17 ? C35 PTY 1101 A 1 
HETATM 27 C C36 PTY . . . D 2 203.234 188.717 172.753 1 90.17 ? C36 PTY 1101 A 1 
HETATM 28 C C37 PTY . . . D 2 202.721 187.589 171.865 1 90.17 ? C37 PTY 1101 A 1 
HETATM 29 C C38 PTY . . . D 2 201.281 187.225 172.203 1 90.17 ? C38 PTY 1101 A 1 
HETATM 30 C C39 PTY . . . D 2 201.172 186.728 173.638 1 90.17 ? C39 PTY 1101 A 1 
HETATM 31 P P1 PTY . . . D 2 209.376 184.202 165.609 1 90.17 ? P1 PTY 1101 A 1 
HETATM 32 O O11 PTY . . . D 2 208.859 185.477 164.776 1 90.17 ? O11 PTY 1101 A 1 
HETATM 33 O O12 PTY . . . D 2 210.432 183.525 164.774 1 90.17 ? O12 PTY 1101 A 1 
HETATM 34 O O13 PTY . . . D 2 208.188 183.399 166.082 1 90.17 ? O13 PTY 1101 A 1 
HETATM 35 O O14 PTY . . . D 2 210.069 184.87 166.904 1 90.17 ? O14 PTY 1101 A 1 
HETATM 36 N N1 PTY . . . D 2 209.14 188.214 164.08 1 90.17 ? N1 PTY 1101 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           36 
#