data_6VKS
#
_model_server_result.job_id            eSCApdoTKF2ab6eTZTaqdg 
_model_server_result.datetime_utc      '2025-03-06 08:42:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vks 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1106}' 
#
_entry.id    6VKS 
#
_exptl.entry_id    6VKS 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              351.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VKS 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VKS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C16 H21 N3 O4 S' 
_chem_comp.formula_weight    351.421 
_chem_comp.id                AIX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'AMPICILLIN (open form)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C8 AIX doub 1 n y 
C8 C7 AIX sing 2 n y 
C8 H8 AIX sing 3 n n 
C7 C5 AIX doub 4 n y 
C11 C5 AIX sing 5 n y 
C5 C4 AIX sing 6 n n 
C1 C6 AIX sing 7 n n 
C16 C6 AIX sing 8 n n 
C6 C12 AIX sing 9 n n 
C6 S1 AIX sing 10 n n 
C14 N1 AIX sing 11 n n 
N1 C3 AIX sing 12 n n 
N1 HN1 AIX sing 13 n n 
O2 C2 AIX doub 14 n n 
O1 C2 AIX sing 15 n n 
C2 C12 AIX sing 16 n n 
C12 N3 AIX sing 17 n n 
N3 C13 AIX sing 18 n n 
N3 HN3 AIX sing 19 n n 
C3 C4 AIX sing 20 n n 
C4 N2 AIX sing 21 n n 
C4 H4 AIX sing 22 n n 
C1 H1 AIX sing 23 n n 
C1 H1A AIX sing 24 n n 
C1 H1B AIX sing 25 n n 
C3 O3 AIX doub 26 n n 
C7 H7 AIX sing 27 n n 
C9 C10 AIX sing 28 n y 
C9 H9 AIX sing 29 n n 
C10 C11 AIX doub 30 n y 
C10 H10 AIX sing 31 n n 
C11 H11 AIX sing 32 n n 
C12 H12 AIX sing 33 n n 
S1 C13 AIX sing 34 n n 
C13 C14 AIX sing 35 n n 
C13 H13 AIX sing 36 n n 
C15 C14 AIX sing 37 n n 
C14 H14 AIX sing 38 n n 
O4 C15 AIX doub 39 n n 
C15 H15 AIX sing 40 n n 
C16 H16 AIX sing 41 n n 
C16 H16A AIX sing 42 n n 
C16 H16B AIX sing 43 n n 
N2 HN2 AIX sing 44 n n 
N2 HN2A AIX sing 45 n n 
O1 HO1 AIX sing 46 n n 
#
_atom_sites.entry_id                     6VKS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 PTY A 1 1101 3 PTY PTY . 
E 2 PTY A 1 1102 9 PTY PTY . 
F 2 PTY A 1 1103 12 PTY PTY . 
G 2 PTY B 1 1101 6 PTY PTY . 
H 2 PTY B 1 1102 7 PTY PTY . 
I 2 PTY B 1 1103 8 PTY PTY . 
J 2 PTY B 1 1104 17 PTY PTY . 
K 2 PTY B 1 1105 18 PTY PTY . 
L 3 AIX B 1 1106 1 AIX LIG . 
M 2 PTY C 1 1101 1 PTY PTY . 
N 2 PTY C 1 1102 5 PTY PTY . 
O 2 PTY C 1 1103 11 PTY PTY . 
P 2 PTY C 1 1104 13 PTY PTY . 
Q 2 PTY C 1 1105 15 PTY PTY . 
R 2 PTY C 1 1106 16 PTY PTY . 
S 2 PTY C 1 1107 20 PTY PTY . 
T 2 PTY C 1 1108 21 PTY PTY . 
U 2 PTY C 1 1109 23 PTY PTY . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 AIX . . . L 3 224.375 195.394 228.887 1 20 ? C8 AIX 1106 B 1 
HETATM 2 C C5 AIX . . . L 3 226.375 196.22 227.851 1 20 ? C5 AIX 1106 B 1 
HETATM 3 C C6 AIX . . . L 3 226.056 194.286 219.83 1 20 ? C6 AIX 1106 B 1 
HETATM 4 N N1 AIX . . . L 3 226.642 195.906 224.168 1 20 ? N1 AIX 1106 B 1 
HETATM 5 C C2 AIX . . . L 3 223.612 194.841 219.322 1 20 ? C2 AIX 1106 B 1 
HETATM 6 N N3 AIX . . . L 3 224.558 195.774 221.26 1 20 ? N3 AIX 1106 B 1 
HETATM 7 C C4 AIX . . . L 3 227.281 196.339 226.625 1 20 ? C4 AIX 1106 B 1 
HETATM 8 C C1 AIX . . . L 3 226.196 194.795 218.398 1 20 ? C1 AIX 1106 B 1 
HETATM 9 C C3 AIX . . . L 3 226.788 195.404 225.522 1 20 ? C3 AIX 1106 B 1 
HETATM 10 C C7 AIX . . . L 3 225.196 195.499 227.777 1 20 ? C7 AIX 1106 B 1 
HETATM 11 C C9 AIX . . . L 3 224.732 196.011 230.073 1 20 ? C9 AIX 1106 B 1 
HETATM 12 C C10 AIX . . . L 3 225.911 196.733 230.148 1 20 ? C10 AIX 1106 B 1 
HETATM 13 C C11 AIX . . . L 3 226.732 196.839 229.037 1 20 ? C11 AIX 1106 B 1 
HETATM 14 C C12 AIX . . . L 3 224.48 194.604 220.402 1 20 ? C12 AIX 1106 B 1 
HETATM 15 C C13 AIX . . . L 3 226.114 195.765 221.859 1 20 ? C13 AIX 1106 B 1 
HETATM 16 C C14 AIX . . . L 3 226.174 195.033 223.108 1 20 ? C14 AIX 1106 B 1 
HETATM 17 C C16 AIX . . . L 3 226.333 192.785 219.88 1 20 ? C16 AIX 1106 B 1 
HETATM 18 N N2 AIX . . . L 3 228.643 195.989 226.984 1 20 ? N2 AIX 1106 B 1 
HETATM 19 O O1 AIX . . . L 3 223.455 196.008 218.875 1 20 ? O1 AIX 1106 B 1 
HETATM 20 O O2 AIX . . . L 3 222.989 193.883 218.796 1 20 ? O2 AIX 1106 B 1 
HETATM 21 O O3 AIX . . . L 3 226.527 194.275 225.767 1 20 ? O3 AIX 1106 B 1 
HETATM 22 S S1 AIX . . . L 3 227.01 194.994 220.702 1 20 ? S1 AIX 1106 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           22 
#