data_6VKT
#
_model_server_result.job_id            mlA_vt5KH36MdW14fGeRMA 
_model_server_result.datetime_utc      '2025-03-06 08:42:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vkt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1102}' 
#
_entry.id    6VKT 
#
_exptl.entry_id    6VKT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              734.039 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHOSPHATIDYLETHANOLAMINE 
_entity.pdbx_number_of_molecules    23 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VKT 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VKT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
#
_chem_comp.formula           'C40 H80 N O8 P' 
_chem_comp.formula_weight    734.039 
_chem_comp.id                PTY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHOSPHATIDYLETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O4 PTY sing 395 n n 
C1 C6 PTY sing 396 n n 
C1 HC11 PTY sing 397 n n 
C1 HC12 PTY sing 398 n n 
C2 C3 PTY sing 399 n n 
C2 N1 PTY sing 400 n n 
C2 HC21 PTY sing 401 n n 
C2 HC22 PTY sing 402 n n 
C3 O11 PTY sing 403 n n 
C3 HC31 PTY sing 404 n n 
C3 HC32 PTY sing 405 n n 
O4 C30 PTY sing 406 n n 
C5 C6 PTY sing 407 n n 
C5 O14 PTY sing 408 n n 
C5 HC51 PTY sing 409 n n 
C5 HC52 PTY sing 410 n n 
C6 O7 PTY sing 411 n n 
C6 HC6 PTY sing 412 n n 
O7 C8 PTY sing 413 n n 
C8 O10 PTY doub 414 n n 
C8 C11 PTY sing 415 n n 
C11 C12 PTY sing 416 n n 
C11 H111 PTY sing 417 n n 
C11 H112 PTY sing 418 n n 
C12 C13 PTY sing 419 n n 
C12 H121 PTY sing 420 n n 
C12 H122 PTY sing 421 n n 
C13 C14 PTY sing 422 n n 
C13 H131 PTY sing 423 n n 
C13 H132 PTY sing 424 n n 
C14 C15 PTY sing 425 n n 
C14 H141 PTY sing 426 n n 
C14 H142 PTY sing 427 n n 
C15 C16 PTY sing 428 n n 
C15 H151 PTY sing 429 n n 
C15 H152 PTY sing 430 n n 
C16 C17 PTY sing 431 n n 
C16 H161 PTY sing 432 n n 
C16 H162 PTY sing 433 n n 
C17 C18 PTY sing 434 n n 
C17 H171 PTY sing 435 n n 
C17 H172 PTY sing 436 n n 
C18 C19 PTY sing 437 n n 
C18 H181 PTY sing 438 n n 
C18 H182 PTY sing 439 n n 
C19 C20 PTY sing 440 n n 
C19 H191 PTY sing 441 n n 
C19 H192 PTY sing 442 n n 
C20 C21 PTY sing 443 n n 
C20 H201 PTY sing 444 n n 
C20 H202 PTY sing 445 n n 
C21 C22 PTY sing 446 n n 
C21 H211 PTY sing 447 n n 
C21 H212 PTY sing 448 n n 
C22 C23 PTY sing 449 n n 
C22 H221 PTY sing 450 n n 
C22 H222 PTY sing 451 n n 
C23 C24 PTY sing 452 n n 
C23 H231 PTY sing 453 n n 
C23 H232 PTY sing 454 n n 
C24 C25 PTY sing 455 n n 
C24 H241 PTY sing 456 n n 
C24 H242 PTY sing 457 n n 
C25 C26 PTY sing 458 n n 
C25 H251 PTY sing 459 n n 
C25 H252 PTY sing 460 n n 
C26 C27 PTY sing 461 n n 
C26 H261 PTY sing 462 n n 
C26 H262 PTY sing 463 n n 
C27 C28 PTY sing 464 n n 
C27 H271 PTY sing 465 n n 
C27 H272 PTY sing 466 n n 
C28 C29 PTY sing 467 n n 
C28 H281 PTY sing 468 n n 
C28 H282 PTY sing 469 n n 
C29 H291 PTY sing 470 n n 
C29 H292 PTY sing 471 n n 
C29 H293 PTY sing 472 n n 
C30 C31 PTY sing 473 n n 
C30 O30 PTY doub 474 n n 
C31 C32 PTY sing 475 n n 
C31 H311 PTY sing 476 n n 
C31 H312 PTY sing 477 n n 
C32 C33 PTY sing 478 n n 
C32 H321 PTY sing 479 n n 
C32 H322 PTY sing 480 n n 
C33 C34 PTY sing 481 n n 
C33 H331 PTY sing 482 n n 
C33 H332 PTY sing 483 n n 
C34 C35 PTY sing 484 n n 
C34 H341 PTY sing 485 n n 
C34 H342 PTY sing 486 n n 
C35 C36 PTY sing 487 n n 
C35 H351 PTY sing 488 n n 
C35 H352 PTY sing 489 n n 
C36 C37 PTY sing 490 n n 
C36 H361 PTY sing 491 n n 
C36 H362 PTY sing 492 n n 
C37 C38 PTY sing 493 n n 
C37 H371 PTY sing 494 n n 
C37 H372 PTY sing 495 n n 
C38 C39 PTY sing 496 n n 
C38 H381 PTY sing 497 n n 
C38 H382 PTY sing 498 n n 
C39 C40 PTY sing 499 n n 
C39 H391 PTY sing 500 n n 
C39 H392 PTY sing 501 n n 
C40 C41 PTY sing 502 n n 
C40 H401 PTY sing 503 n n 
C40 H402 PTY sing 504 n n 
C41 C42 PTY sing 505 n n 
C41 H411 PTY sing 506 n n 
C41 H412 PTY sing 507 n n 
C42 C43 PTY sing 508 n n 
C42 H421 PTY sing 509 n n 
C42 H422 PTY sing 510 n n 
C43 C44 PTY sing 511 n n 
C43 H431 PTY sing 512 n n 
C43 H432 PTY sing 513 n n 
C44 H441 PTY sing 514 n n 
C44 H442 PTY sing 515 n n 
C44 H443 PTY sing 516 n n 
P1 O11 PTY sing 517 n n 
P1 O12 PTY sing 518 n n 
P1 O13 PTY doub 519 n n 
P1 O14 PTY sing 520 n n 
O12 H12O PTY sing 521 n n 
N1 HN11 PTY sing 522 n n 
N1 HN12 PTY sing 523 n n 
#
_atom_sites.entry_id                     6VKT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 PTY A 1 1101 1 PTY PTY . 
E 2 PTY A 1 1102 3 PTY PTY . 
F 2 PTY A 1 1103 4 PTY PTY . 
G 2 PTY A 1 1104 5 PTY PTY . 
H 2 PTY A 1 1105 10 PTY PTY . 
I 2 PTY A 1 1106 12 PTY PTY . 
J 3 ERY B 1 1101 1101 ERY ERY . 
K 2 PTY B 1 1102 6 PTY PTY . 
L 2 PTY B 1 1103 7 PTY PTY . 
M 2 PTY B 1 1104 8 PTY PTY . 
N 2 PTY B 1 1105 9 PTY PTY . 
O 2 PTY B 1 1106 14 PTY PTY . 
P 2 PTY B 1 1107 17 PTY PTY . 
Q 2 PTY B 1 1108 18 PTY PTY . 
R 2 PTY B 1 1109 22 PTY PTY . 
S 2 PTY C 1 1101 2 PTY PTY . 
T 2 PTY C 1 1102 11 PTY PTY . 
U 2 PTY C 1 1103 13 PTY PTY . 
V 2 PTY C 1 1104 15 PTY PTY . 
W 2 PTY C 1 1105 16 PTY PTY . 
X 2 PTY C 1 1106 19 PTY PTY . 
Y 2 PTY C 1 1107 20 PTY PTY . 
Z 2 PTY C 1 1108 21 PTY PTY . 
AA 2 PTY C 1 1109 23 PTY PTY . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PTY . . . K 2 191.482 174.962 159.997 1 93.12 ? C1 PTY 1102 B 1 
HETATM 2 C C2 PTY . . . K 2 192.247 178.287 156.678 1 93.12 ? C2 PTY 1102 B 1 
HETATM 3 C C3 PTY . . . K 2 192.183 176.828 157.119 1 93.12 ? C3 PTY 1102 B 1 
HETATM 4 O O4 PTY . . . K 2 190.976 175.411 161.243 1 93.12 ? O4 PTY 1102 B 1 
HETATM 5 C C5 PTY . . . K 2 190.957 173.461 158.083 1 93.12 ? C5 PTY 1102 B 1 
HETATM 6 C C6 PTY . . . K 2 190.707 173.728 159.564 1 93.12 ? C6 PTY 1102 B 1 
HETATM 7 O O7 PTY . . . K 2 189.316 173.972 159.784 1 93.12 ? O7 PTY 1102 B 1 
HETATM 8 C C8 PTY . . . K 2 188.556 172.83 160.254 1 93.12 ? C8 PTY 1102 B 1 
HETATM 9 O O10 PTY . . . K 2 188.597 171.775 159.65 1 93.12 ? O10 PTY 1102 B 1 
HETATM 10 C C11 PTY . . . K 2 187.714 172.971 161.489 1 93.12 ? C11 PTY 1102 B 1 
HETATM 11 C C12 PTY . . . K 2 187.226 174.402 161.637 1 93.12 ? C12 PTY 1102 B 1 
HETATM 12 C C13 PTY . . . K 2 186.557 174.536 162.99 1 93.12 ? C13 PTY 1102 B 1 
HETATM 13 C C14 PTY . . . K 2 185.894 175.884 163.182 1 93.12 ? C14 PTY 1102 B 1 
HETATM 14 C C15 PTY . . . K 2 184.974 175.8 164.385 1 93.12 ? C15 PTY 1102 B 1 
HETATM 15 C C16 PTY . . . K 2 184.701 177.171 164.965 1 93.12 ? C16 PTY 1102 B 1 
HETATM 16 C C17 PTY . . . K 2 183.671 177.068 166.072 1 93.12 ? C17 PTY 1102 B 1 
HETATM 17 C C18 PTY . . . K 2 183.476 178.425 166.714 1 93.12 ? C18 PTY 1102 B 1 
HETATM 18 C C19 PTY . . . K 2 182.362 178.371 167.742 1 93.12 ? C19 PTY 1102 B 1 
HETATM 19 C C20 PTY . . . K 2 182.309 179.669 168.532 1 93.12 ? C20 PTY 1102 B 1 
HETATM 20 C C30 PTY . . . K 2 191.368 176.717 161.708 1 93.12 ? C30 PTY 1102 B 1 
HETATM 21 C C31 PTY . . . K 2 191.394 177.025 163.179 1 93.12 ? C31 PTY 1102 B 1 
HETATM 22 O O30 PTY . . . K 2 191.685 177.553 160.884 1 93.12 ? O30 PTY 1102 B 1 
HETATM 23 C C32 PTY . . . K 2 189.998 177.28 163.716 1 93.12 ? C32 PTY 1102 B 1 
HETATM 24 C C33 PTY . . . K 2 190.141 177.76 165.15 1 93.12 ? C33 PTY 1102 B 1 
HETATM 25 C C34 PTY . . . K 2 188.796 178.07 165.778 1 93.12 ? C34 PTY 1102 B 1 
HETATM 26 C C35 PTY . . . K 2 188.547 179.567 165.825 1 93.12 ? C35 PTY 1102 B 1 
HETATM 27 C C36 PTY . . . K 2 187.296 179.852 166.641 1 93.12 ? C36 PTY 1102 B 1 
HETATM 28 C C37 PTY . . . K 2 186.846 181.298 166.496 1 93.12 ? C37 PTY 1102 B 1 
HETATM 29 C C38 PTY . . . K 2 187.64 182.214 167.413 1 93.12 ? C38 PTY 1102 B 1 
HETATM 30 C C39 PTY . . . K 2 186.929 183.547 167.581 1 93.12 ? C39 PTY 1102 B 1 
HETATM 31 C C40 PTY . . . K 2 187.346 184.213 168.885 1 93.12 ? C40 PTY 1102 B 1 
HETATM 32 P P1 PTY . . . K 2 192.373 174.383 156.076 1 93.12 ? P1 PTY 1102 B 1 
HETATM 33 O O11 PTY . . . K 2 192.382 175.993 155.984 1 93.12 ? O11 PTY 1102 B 1 
HETATM 34 O O12 PTY . . . K 2 193.741 173.89 155.664 1 93.12 ? O12 PTY 1102 B 1 
HETATM 35 O O13 PTY . . . K 2 191.151 173.86 155.365 1 93.12 ? O13 PTY 1102 B 1 
HETATM 36 O O14 PTY . . . K 2 192.188 174.034 157.636 1 93.12 ? O14 PTY 1102 B 1 
HETATM 37 N N1 PTY . . . K 2 192.096 179.161 157.826 1 93.12 ? N1 PTY 1102 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    135 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          50 
_model_server_stats.element_count           37 
#