data_6VKV # _model_server_result.job_id 9jSeQuywN9b1LeQcQ04j4g _model_server_result.datetime_utc '2024-12-03 04:30:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vkv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":305}' # _entry.id 6VKV # _exptl.entry_id 6VKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6VKV _cell.length_a 160.05 _cell.length_b 160.05 _cell.length_c 57.526 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall 'P 6' _symmetry.space_group_name_H-M 'P 6' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,Z,AA 1 1,2,4 C,R,S,T,U,V,W,X,Y,BA 2 1,3,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -80.025 -138.607366 0 3 'crystal symmetry operation' 2_345 -y-2,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -240.075 -138.607366 0 4 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 80.025 -138.607366 0 5 'crystal symmetry operation' 3_435 -x+y-1,-x-2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 -277.214732 0 6 'crystal symmetry operation' 4_335 -x-2,-y-2,z -1 0 0 0 -1 0 0 0 1 -160.05 -277.214732 0 7 'crystal symmetry operation' 5_545 y,-x+y-1,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 80.025 -138.607366 0 8 'crystal symmetry operation' 6_455 x-y-1,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 -160.05 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N ? 4 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 B SG CYS 45 B CYS 45 2_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 45 A CYS 45 1_555 B SG CYS 14 B CYS 14 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 198 A CYS 198 1_555 A SG CYS 218 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 B SG CYS 198 B CYS 198 1_555 B SG CYS 218 B CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf5 C SG CYS 14 C CYS 14 1_555 C SG CYS 45 C CYS 45 6_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 C SG CYS 198 C CYS 198 1_555 C SG CYS 218 C CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6VKV _atom_sites.fract_transf_matrix[1][1] 0.006248 _atom_sites.fract_transf_matrix[1][2] 0.003607 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 QNG A 1 301 301 QNG LIG . E 3 IOD A 1 302 21 IOD IOD . F 3 IOD A 1 303 22 IOD IOD . G 3 IOD A 1 304 23 IOD IOD . H 4 CL A 1 305 4 CL CL . I 4 CL A 1 306 6 CL CL . J 4 CL A 1 307 18 CL CL . K 4 CL A 1 308 23 CL CL . L 2 QNG B 1 301 301 QNG LIG . M 3 IOD B 1 302 20 IOD IOD . N 4 CL B 1 303 7 CL CL . O 4 CL B 1 304 14 CL CL . P 4 CL B 1 305 20 CL CL . Q 4 CL B 1 306 24 CL CL . R 2 QNG C 1 301 301 QNG LIG . S 3 IOD C 1 302 13 IOD IOD . T 4 CL C 1 303 8 CL CL . U 4 CL C 1 304 12 CL CL . V 4 CL C 1 305 13 CL CL . W 4 CL C 1 306 17 CL CL . X 4 CL C 1 307 19 CL CL . Y 4 CL C 1 308 25 CL CL . Z 5 HOH A 1 401 113 HOH HOH . Z 5 HOH A 2 402 133 HOH HOH . Z 5 HOH A 3 403 173 HOH HOH . Z 5 HOH A 4 404 26 HOH HOH . Z 5 HOH A 5 405 142 HOH HOH . Z 5 HOH A 6 406 252 HOH HOH . Z 5 HOH A 7 407 72 HOH HOH . Z 5 HOH A 8 408 122 HOH HOH . Z 5 HOH A 9 409 190 HOH HOH . Z 5 HOH A 10 410 37 HOH HOH . Z 5 HOH A 11 411 45 HOH HOH . Z 5 HOH A 12 412 125 HOH HOH . Z 5 HOH A 13 413 172 HOH HOH . Z 5 HOH A 14 414 127 HOH HOH . Z 5 HOH A 15 415 87 HOH HOH . Z 5 HOH A 16 416 123 HOH HOH . Z 5 HOH A 17 417 99 HOH HOH . Z 5 HOH A 18 418 104 HOH HOH . Z 5 HOH A 19 419 131 HOH HOH . Z 5 HOH A 20 420 31 HOH HOH . Z 5 HOH A 21 421 86 HOH HOH . Z 5 HOH A 22 422 20 HOH HOH . Z 5 HOH A 23 423 55 HOH HOH . Z 5 HOH A 24 424 156 HOH HOH . Z 5 HOH A 25 425 40 HOH HOH . Z 5 HOH A 26 426 120 HOH HOH . Z 5 HOH A 27 427 77 HOH HOH . Z 5 HOH A 28 428 144 HOH HOH . Z 5 HOH A 29 429 158 HOH HOH . Z 5 HOH A 30 430 126 HOH HOH . Z 5 HOH A 31 431 25 HOH HOH . Z 5 HOH A 32 432 124 HOH HOH . Z 5 HOH A 33 433 59 HOH HOH . Z 5 HOH A 34 434 228 HOH HOH . Z 5 HOH A 35 435 69 HOH HOH . Z 5 HOH A 36 436 88 HOH HOH . Z 5 HOH A 37 437 116 HOH HOH . Z 5 HOH A 38 438 38 HOH HOH . Z 5 HOH A 39 439 151 HOH HOH . Z 5 HOH A 40 440 98 HOH HOH . Z 5 HOH A 41 441 66 HOH HOH . Z 5 HOH A 42 442 192 HOH HOH . Z 5 HOH A 43 443 154 HOH HOH . Z 5 HOH A 44 444 242 HOH HOH . Z 5 HOH A 45 445 47 HOH HOH . Z 5 HOH A 46 446 117 HOH HOH . Z 5 HOH A 47 447 28 HOH HOH . Z 5 HOH A 48 448 175 HOH HOH . Z 5 HOH A 49 449 203 HOH HOH . Z 5 HOH A 50 450 1 HOH HOH . Z 5 HOH A 51 451 8 HOH HOH . Z 5 HOH A 52 452 135 HOH HOH . Z 5 HOH A 53 453 5 HOH HOH . Z 5 HOH A 54 454 19 HOH HOH . Z 5 HOH A 55 455 178 HOH HOH . Z 5 HOH A 56 456 53 HOH HOH . Z 5 HOH A 57 457 219 HOH HOH . Z 5 HOH A 58 458 199 HOH HOH . Z 5 HOH A 59 459 22 HOH HOH . Z 5 HOH A 60 460 74 HOH HOH . Z 5 HOH A 61 461 229 HOH HOH . Z 5 HOH A 62 462 234 HOH HOH . Z 5 HOH A 63 463 206 HOH HOH . Z 5 HOH A 64 464 261 HOH HOH . Z 5 HOH A 65 465 217 HOH HOH . Z 5 HOH A 66 466 51 HOH HOH . Z 5 HOH A 67 467 260 HOH HOH . Z 5 HOH A 68 468 198 HOH HOH . Z 5 HOH A 69 469 196 HOH HOH . Z 5 HOH A 70 470 214 HOH HOH . Z 5 HOH A 71 471 212 HOH HOH . Z 5 HOH A 72 472 211 HOH HOH . Z 5 HOH A 73 473 213 HOH HOH . AA 5 HOH B 1 401 177 HOH HOH . AA 5 HOH B 2 402 70 HOH HOH . AA 5 HOH B 3 403 258 HOH HOH . AA 5 HOH B 4 404 50 HOH HOH . AA 5 HOH B 5 405 106 HOH HOH . AA 5 HOH B 6 406 62 HOH HOH . AA 5 HOH B 7 407 171 HOH HOH . AA 5 HOH B 8 408 32 HOH HOH . AA 5 HOH B 9 409 13 HOH HOH . AA 5 HOH B 10 410 93 HOH HOH . AA 5 HOH B 11 411 103 HOH HOH . AA 5 HOH B 12 412 129 HOH HOH . AA 5 HOH B 13 413 143 HOH HOH . AA 5 HOH B 14 414 58 HOH HOH . AA 5 HOH B 15 415 132 HOH HOH . AA 5 HOH B 16 416 188 HOH HOH . AA 5 HOH B 17 417 68 HOH HOH . AA 5 HOH B 18 418 60 HOH HOH . AA 5 HOH B 19 419 141 HOH HOH . AA 5 HOH B 20 420 64 HOH HOH . AA 5 HOH B 21 421 118 HOH HOH . AA 5 HOH B 22 422 54 HOH HOH . AA 5 HOH B 23 423 67 HOH HOH . AA 5 HOH B 24 424 159 HOH HOH . AA 5 HOH B 25 425 48 HOH HOH . AA 5 HOH B 26 426 150 HOH HOH . AA 5 HOH B 27 427 81 HOH HOH . AA 5 HOH B 28 428 254 HOH HOH . AA 5 HOH B 29 429 114 HOH HOH . AA 5 HOH B 30 430 39 HOH HOH . AA 5 HOH B 31 431 102 HOH HOH . AA 5 HOH B 32 432 187 HOH HOH . AA 5 HOH B 33 433 189 HOH HOH . AA 5 HOH B 34 434 253 HOH HOH . AA 5 HOH B 35 435 7 HOH HOH . AA 5 HOH B 36 436 96 HOH HOH . AA 5 HOH B 37 437 181 HOH HOH . AA 5 HOH B 38 438 71 HOH HOH . AA 5 HOH B 39 439 36 HOH HOH . AA 5 HOH B 40 440 256 HOH HOH . AA 5 HOH B 41 441 95 HOH HOH . AA 5 HOH B 42 442 148 HOH HOH . AA 5 HOH B 43 443 16 HOH HOH . AA 5 HOH B 44 444 169 HOH HOH . AA 5 HOH B 45 445 92 HOH HOH . AA 5 HOH B 46 446 35 HOH HOH . AA 5 HOH B 47 447 149 HOH HOH . AA 5 HOH B 48 448 42 HOH HOH . AA 5 HOH B 49 449 137 HOH HOH . AA 5 HOH B 50 450 109 HOH HOH . AA 5 HOH B 51 451 230 HOH HOH . AA 5 HOH B 52 452 146 HOH HOH . AA 5 HOH B 53 453 205 HOH HOH . AA 5 HOH B 54 454 6 HOH HOH . AA 5 HOH B 55 455 170 HOH HOH . AA 5 HOH B 56 456 14 HOH HOH . AA 5 HOH B 57 457 163 HOH HOH . AA 5 HOH B 58 458 200 HOH HOH . AA 5 HOH B 59 459 160 HOH HOH . AA 5 HOH B 60 460 186 HOH HOH . AA 5 HOH B 61 461 216 HOH HOH . AA 5 HOH B 62 462 46 HOH HOH . AA 5 HOH B 63 463 195 HOH HOH . AA 5 HOH B 64 464 179 HOH HOH . AA 5 HOH B 65 465 204 HOH HOH . AA 5 HOH B 66 466 162 HOH HOH . AA 5 HOH B 67 467 232 HOH HOH . AA 5 HOH B 68 468 255 HOH HOH . AA 5 HOH B 69 469 243 HOH HOH . AA 5 HOH B 70 470 246 HOH HOH . AA 5 HOH B 71 471 202 HOH HOH . AA 5 HOH B 72 472 239 HOH HOH . AA 5 HOH B 73 473 157 HOH HOH . AA 5 HOH B 74 474 251 HOH HOH . AA 5 HOH B 75 475 257 HOH HOH . AA 5 HOH B 76 476 259 HOH HOH . BA 5 HOH C 1 401 84 HOH HOH . BA 5 HOH C 2 402 9 HOH HOH . BA 5 HOH C 3 403 91 HOH HOH . BA 5 HOH C 4 404 43 HOH HOH . BA 5 HOH C 5 405 49 HOH HOH . BA 5 HOH C 6 406 56 HOH HOH . BA 5 HOH C 7 407 75 HOH HOH . BA 5 HOH C 8 408 57 HOH HOH . BA 5 HOH C 9 409 140 HOH HOH . BA 5 HOH C 10 410 44 HOH HOH . BA 5 HOH C 11 411 27 HOH HOH . BA 5 HOH C 12 412 29 HOH HOH . BA 5 HOH C 13 413 111 HOH HOH . BA 5 HOH C 14 414 101 HOH HOH . BA 5 HOH C 15 415 65 HOH HOH . BA 5 HOH C 16 416 78 HOH HOH . BA 5 HOH C 17 417 115 HOH HOH . BA 5 HOH C 18 418 79 HOH HOH . BA 5 HOH C 19 419 153 HOH HOH . BA 5 HOH C 20 420 73 HOH HOH . BA 5 HOH C 21 421 18 HOH HOH . BA 5 HOH C 22 422 21 HOH HOH . BA 5 HOH C 23 423 128 HOH HOH . BA 5 HOH C 24 424 52 HOH HOH . BA 5 HOH C 25 425 107 HOH HOH . BA 5 HOH C 26 426 183 HOH HOH . BA 5 HOH C 27 427 41 HOH HOH . BA 5 HOH C 28 428 80 HOH HOH . BA 5 HOH C 29 429 11 HOH HOH . BA 5 HOH C 30 430 121 HOH HOH . BA 5 HOH C 31 431 145 HOH HOH . BA 5 HOH C 32 432 85 HOH HOH . BA 5 HOH C 33 433 108 HOH HOH . BA 5 HOH C 34 434 225 HOH HOH . BA 5 HOH C 35 435 174 HOH HOH . BA 5 HOH C 36 436 201 HOH HOH . BA 5 HOH C 37 437 136 HOH HOH . BA 5 HOH C 38 438 30 HOH HOH . BA 5 HOH C 39 439 3 HOH HOH . BA 5 HOH C 40 440 63 HOH HOH . BA 5 HOH C 41 441 168 HOH HOH . BA 5 HOH C 42 442 97 HOH HOH . BA 5 HOH C 43 443 220 HOH HOH . BA 5 HOH C 44 444 110 HOH HOH . BA 5 HOH C 45 445 24 HOH HOH . BA 5 HOH C 46 446 105 HOH HOH . BA 5 HOH C 47 447 147 HOH HOH . BA 5 HOH C 48 448 12 HOH HOH . BA 5 HOH C 49 449 176 HOH HOH . BA 5 HOH C 50 450 17 HOH HOH . BA 5 HOH C 51 451 23 HOH HOH . BA 5 HOH C 52 452 34 HOH HOH . BA 5 HOH C 53 453 61 HOH HOH . BA 5 HOH C 54 454 10 HOH HOH . BA 5 HOH C 55 455 191 HOH HOH . BA 5 HOH C 56 456 33 HOH HOH . BA 5 HOH C 57 457 210 HOH HOH . BA 5 HOH C 58 458 89 HOH HOH . BA 5 HOH C 59 459 15 HOH HOH . BA 5 HOH C 60 460 237 HOH HOH . BA 5 HOH C 61 461 76 HOH HOH . BA 5 HOH C 62 462 82 HOH HOH . BA 5 HOH C 63 463 2 HOH HOH . BA 5 HOH C 64 464 245 HOH HOH . BA 5 HOH C 65 465 4 HOH HOH . BA 5 HOH C 66 466 161 HOH HOH . BA 5 HOH C 67 467 130 HOH HOH . BA 5 HOH C 68 468 227 HOH HOH . BA 5 HOH C 69 469 238 HOH HOH . BA 5 HOH C 70 470 223 HOH HOH . BA 5 HOH C 71 471 155 HOH HOH . BA 5 HOH C 72 472 215 HOH HOH . BA 5 HOH C 73 473 240 HOH HOH . BA 5 HOH C 74 474 218 HOH HOH . BA 5 HOH C 75 475 250 HOH HOH . BA 5 HOH C 76 476 231 HOH HOH . BA 5 HOH C 77 477 224 HOH HOH . BA 5 HOH C 78 478 244 HOH HOH . BA 5 HOH C 79 479 197 HOH HOH . BA 5 HOH C 80 480 226 HOH HOH . BA 5 HOH C 81 481 194 HOH HOH . BA 5 HOH C 82 482 235 HOH HOH . BA 5 HOH C 83 483 119 HOH HOH . BA 5 HOH C 84 484 209 HOH HOH . BA 5 HOH C 85 485 208 HOH HOH . BA 5 HOH C 86 486 222 HOH HOH . BA 5 HOH C 87 487 207 HOH HOH . BA 5 HOH C 88 488 221 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id V _atom_site.label_entity_id 4 _atom_site.Cartn_x -66.206 _atom_site.Cartn_y -115.644 _atom_site.Cartn_z -32.404 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 305 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 374 _model_server_stats.encode_time_ms 46 _model_server_stats.element_count 1 #