data_6VKX # _model_server_result.job_id N-DQM-LBVvaXBmMsPtbm-Q _model_server_result.datetime_utc '2025-08-31 09:56:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vkx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 6VKX # _exptl.entry_id 6VKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.7 _cell.angle_gamma 90 _cell.entry_id 6VKX _cell.length_a 111.999 _cell.length_b 63.248 _cell.length_c 71.941 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,G 1 1 B,F,H 2 1 C,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 237 n n C1 C2 PEG sing 238 n n C1 H11 PEG sing 239 n n C1 H12 PEG sing 240 n n O1 HO1 PEG sing 241 n n C2 O2 PEG sing 242 n n C2 H21 PEG sing 243 n n C2 H22 PEG sing 244 n n O2 C3 PEG sing 245 n n C3 C4 PEG sing 246 n n C3 H31 PEG sing 247 n n C3 H32 PEG sing 248 n n C4 O4 PEG sing 249 n n C4 H41 PEG sing 250 n n C4 H42 PEG sing 251 n n O4 HO4 PEG sing 252 n n # _atom_sites.entry_id 6VKX _atom_sites.fract_transf_matrix[1][1] 0.008929 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000109 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015811 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PG4 A 1 201 201 PG4 PG4 . E 3 PEG A 1 202 1 PEG PGE . F 3 PEG B 1 201 2 PEG PGE . G 4 HOH A 1 301 79 HOH HOH . G 4 HOH A 2 302 27 HOH HOH . G 4 HOH A 3 303 51 HOH HOH . G 4 HOH A 4 304 81 HOH HOH . G 4 HOH A 5 305 73 HOH HOH . G 4 HOH A 6 306 2 HOH HOH . G 4 HOH A 7 307 53 HOH HOH . G 4 HOH A 8 308 69 HOH HOH . G 4 HOH A 9 309 7 HOH HOH . G 4 HOH A 10 310 20 HOH HOH . G 4 HOH A 11 311 86 HOH HOH . G 4 HOH A 12 312 22 HOH HOH . G 4 HOH A 13 313 57 HOH HOH . G 4 HOH A 14 314 90 HOH HOH . G 4 HOH A 15 315 98 HOH HOH . G 4 HOH A 16 316 95 HOH HOH . G 4 HOH A 17 317 32 HOH HOH . G 4 HOH A 18 318 31 HOH HOH . G 4 HOH A 19 319 99 HOH HOH . G 4 HOH A 20 320 72 HOH HOH . G 4 HOH A 21 321 14 HOH HOH . G 4 HOH A 22 322 74 HOH HOH . G 4 HOH A 23 323 52 HOH HOH . G 4 HOH A 24 324 48 HOH HOH . G 4 HOH A 25 325 33 HOH HOH . G 4 HOH A 26 326 25 HOH HOH . G 4 HOH A 27 327 55 HOH HOH . G 4 HOH A 28 328 63 HOH HOH . G 4 HOH A 29 329 88 HOH HOH . G 4 HOH A 30 330 29 HOH HOH . G 4 HOH A 31 331 56 HOH HOH . G 4 HOH A 32 332 45 HOH HOH . G 4 HOH A 33 333 85 HOH HOH . G 4 HOH A 34 334 46 HOH HOH . G 4 HOH A 35 335 62 HOH HOH . G 4 HOH A 36 336 78 HOH HOH . G 4 HOH A 37 337 89 HOH HOH . G 4 HOH A 38 338 93 HOH HOH . G 4 HOH A 39 339 4 HOH HOH . G 4 HOH A 40 340 84 HOH HOH . G 4 HOH A 41 341 15 HOH HOH . G 4 HOH A 42 342 8 HOH HOH . G 4 HOH A 43 343 87 HOH HOH . G 4 HOH A 44 344 91 HOH HOH . G 4 HOH A 45 345 96 HOH HOH . G 4 HOH A 46 346 68 HOH HOH . G 4 HOH A 47 347 92 HOH HOH . G 4 HOH A 48 348 97 HOH HOH . G 4 HOH A 49 349 82 HOH HOH . G 4 HOH A 50 350 80 HOH HOH . G 4 HOH A 51 351 76 HOH HOH . G 4 HOH A 52 352 83 HOH HOH . G 4 HOH A 53 353 94 HOH HOH . H 4 HOH B 1 301 58 HOH HOH . H 4 HOH B 2 302 67 HOH HOH . H 4 HOH B 3 303 44 HOH HOH . H 4 HOH B 4 304 37 HOH HOH . H 4 HOH B 5 305 43 HOH HOH . H 4 HOH B 6 306 47 HOH HOH . H 4 HOH B 7 307 16 HOH HOH . H 4 HOH B 8 308 35 HOH HOH . H 4 HOH B 9 309 26 HOH HOH . H 4 HOH B 10 310 49 HOH HOH . H 4 HOH B 11 311 12 HOH HOH . H 4 HOH B 12 312 34 HOH HOH . H 4 HOH B 13 313 59 HOH HOH . H 4 HOH B 14 314 40 HOH HOH . H 4 HOH B 15 315 18 HOH HOH . H 4 HOH B 16 316 17 HOH HOH . H 4 HOH B 17 317 24 HOH HOH . H 4 HOH B 18 318 42 HOH HOH . H 4 HOH B 19 319 107 HOH HOH . H 4 HOH B 20 320 70 HOH HOH . H 4 HOH B 21 321 50 HOH HOH . H 4 HOH B 22 322 3 HOH HOH . H 4 HOH B 23 323 54 HOH HOH . H 4 HOH B 24 324 39 HOH HOH . H 4 HOH B 25 325 11 HOH HOH . H 4 HOH B 26 326 64 HOH HOH . H 4 HOH B 27 327 103 HOH HOH . H 4 HOH B 28 328 19 HOH HOH . H 4 HOH B 29 329 60 HOH HOH . H 4 HOH B 30 330 9 HOH HOH . H 4 HOH B 31 331 106 HOH HOH . H 4 HOH B 32 332 6 HOH HOH . H 4 HOH B 33 333 30 HOH HOH . H 4 HOH B 34 334 105 HOH HOH . H 4 HOH B 35 335 21 HOH HOH . H 4 HOH B 36 336 10 HOH HOH . H 4 HOH B 37 337 104 HOH HOH . H 4 HOH B 38 338 102 HOH HOH . H 4 HOH B 39 339 119 HOH HOH . H 4 HOH B 40 340 75 HOH HOH . I 4 HOH C 1 201 114 HOH HOH . I 4 HOH C 2 202 41 HOH HOH . I 4 HOH C 3 203 71 HOH HOH . I 4 HOH C 4 204 109 HOH HOH . I 4 HOH C 5 205 5 HOH HOH . I 4 HOH C 6 206 117 HOH HOH . I 4 HOH C 7 207 65 HOH HOH . I 4 HOH C 8 208 116 HOH HOH . I 4 HOH C 9 209 66 HOH HOH . I 4 HOH C 10 210 112 HOH HOH . I 4 HOH C 11 211 101 HOH HOH . I 4 HOH C 12 212 108 HOH HOH . I 4 HOH C 13 213 115 HOH HOH . I 4 HOH C 14 214 77 HOH HOH . I 4 HOH C 15 215 61 HOH HOH . I 4 HOH C 16 216 36 HOH HOH . I 4 HOH C 17 217 38 HOH HOH . I 4 HOH C 18 218 118 HOH HOH . I 4 HOH C 19 219 13 HOH HOH . I 4 HOH C 20 220 111 HOH HOH . I 4 HOH C 21 221 28 HOH HOH . I 4 HOH C 22 222 23 HOH HOH . I 4 HOH C 23 223 110 HOH HOH . I 4 HOH C 24 224 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . E 3 -35.247 -7.512 -4.942 1 39.32 ? C1 PEG 202 A 1 HETATM 2 O O1 PEG . . . E 3 -34.594 -8.683 -5.459 1 42.51 ? O1 PEG 202 A 1 HETATM 3 C C2 PEG . . . E 3 -36.356 -7.125 -5.908 1 38.14 ? C2 PEG 202 A 1 HETATM 4 O O2 PEG . . . E 3 -37.154 -6.066 -5.379 1 39.19 ? O2 PEG 202 A 1 HETATM 5 C C3 PEG . . . E 3 -37.853 -5.289 -6.391 1 38.95 ? C3 PEG 202 A 1 HETATM 6 C C4 PEG . . . E 3 -38.349 -6.158 -7.563 1 39.84 ? C4 PEG 202 A 1 HETATM 7 O O4 PEG . . . E 3 -39.053 -5.339 -8.516 1 41.66 ? O4 PEG 202 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 66 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #