data_6VL4
#
_model_server_result.job_id            8aFpBtLu1Z8p6Nmi7REaNA 
_model_server_result.datetime_utc      '2024-11-24 03:15:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vl4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    6VL4 
#
_exptl.entry_id    6VL4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              361.434 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-cyclopentyl{4-[(quinolin-2-yl)methoxy]phenyl}acetic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6VL4 
_cell.length_a            76.417 
_cell.length_b            76.417 
_cell.length_c            123.784 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VL4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 60 A TYR 58 1_555 A N CSO 61 A CSO 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale2 A C CSO 61 A CSO 59 1_555 A N ARG 62 A ARG 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C23 H23 N O3' 
_chem_comp.formula_weight    361.434 
_chem_comp.id                QY1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-cyclopentyl{4-[(quinolin-2-yl)methoxy]phenyl}acetic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C20 QY1 sing 369 n n 
C18 C17 QY1 sing 370 n n 
C8 C5 QY1 doub 371 n y 
C8 C14 QY1 sing 372 n y 
C20 C21 QY1 sing 373 n n 
C5 C12 QY1 sing 374 n y 
O27 C14 QY1 sing 375 n n 
O27 C22 QY1 sing 376 n n 
C10 C4 QY1 doub 377 n y 
C10 C15 QY1 sing 378 n y 
C4 C11 QY1 sing 379 n y 
C14 C9 QY1 doub 380 n y 
C17 C19 QY1 sing 381 n n 
C12 C23 QY1 sing 382 n n 
C12 C6 QY1 doub 383 n y 
C21 C23 QY1 sing 384 n n 
C21 C19 QY1 sing 385 n n 
C22 C15 QY1 sing 386 n n 
C15 N24 QY1 doub 387 n y 
C23 C16 QY1 sing 388 n n 
C11 C3 QY1 doub 389 n y 
C11 C13 QY1 sing 390 n y 
C9 C6 QY1 sing 391 n y 
C3 C1 QY1 sing 392 n y 
N24 C13 QY1 sing 393 n y 
C13 C7 QY1 doub 394 n y 
C16 O25 QY1 doub 395 n n 
C16 O26 QY1 sing 396 n n 
C1 C2 QY1 doub 397 n y 
C7 C2 QY1 sing 398 n y 
C7 H1 QY1 sing 399 n n 
C6 H2 QY1 sing 400 n n 
C1 H3 QY1 sing 401 n n 
C5 H4 QY1 sing 402 n n 
C4 H5 QY1 sing 403 n n 
C3 H6 QY1 sing 404 n n 
C2 H7 QY1 sing 405 n n 
C8 H8 QY1 sing 406 n n 
C9 H9 QY1 sing 407 n n 
C10 H10 QY1 sing 408 n n 
C17 H11 QY1 sing 409 n n 
C17 H12 QY1 sing 410 n n 
C18 H13 QY1 sing 411 n n 
C18 H14 QY1 sing 412 n n 
C19 H15 QY1 sing 413 n n 
C19 H16 QY1 sing 414 n n 
C20 H17 QY1 sing 415 n n 
C20 H18 QY1 sing 416 n n 
C21 H19 QY1 sing 417 n n 
C22 H20 QY1 sing 418 n n 
C22 H21 QY1 sing 419 n n 
C23 H22 QY1 sing 420 n n 
O26 H23 QY1 sing 421 n n 
#
_atom_sites.entry_id                     6VL4 
_atom_sites.fract_transf_matrix[1][1]    0.013086 
_atom_sites.fract_transf_matrix[1][2]    0.007555 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015111 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008079 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 QY1 A 1 201 1 QY1 SX1 . 
C 3 BOG A 1 202 1 BOG BOG . 
D 4 PG4 A 1 203 2 PG4 PG4 . 
E 4 PG4 A 1 204 3 PG4 PG4 . 
F 5 HOH A 1 301 47 HOH HOH . 
F 5 HOH A 2 302 21 HOH HOH . 
F 5 HOH A 3 303 25 HOH HOH . 
F 5 HOH A 4 304 15 HOH HOH . 
F 5 HOH A 5 305 27 HOH HOH . 
F 5 HOH A 6 306 13 HOH HOH . 
F 5 HOH A 7 307 49 HOH HOH . 
F 5 HOH A 8 308 6 HOH HOH . 
F 5 HOH A 9 309 28 HOH HOH . 
F 5 HOH A 10 310 14 HOH HOH . 
F 5 HOH A 11 311 30 HOH HOH . 
F 5 HOH A 12 312 34 HOH HOH . 
F 5 HOH A 13 313 56 HOH HOH . 
F 5 HOH A 14 314 31 HOH HOH . 
F 5 HOH A 15 315 52 HOH HOH . 
F 5 HOH A 16 316 39 HOH HOH . 
F 5 HOH A 17 317 18 HOH HOH . 
F 5 HOH A 18 318 20 HOH HOH . 
F 5 HOH A 19 319 40 HOH HOH . 
F 5 HOH A 20 320 60 HOH HOH . 
F 5 HOH A 21 321 29 HOH HOH . 
F 5 HOH A 22 322 44 HOH HOH . 
F 5 HOH A 23 323 48 HOH HOH . 
F 5 HOH A 24 324 5 HOH HOH . 
F 5 HOH A 25 325 54 HOH HOH . 
F 5 HOH A 26 326 26 HOH HOH . 
F 5 HOH A 27 327 61 HOH HOH . 
F 5 HOH A 28 328 16 HOH HOH . 
F 5 HOH A 29 329 12 HOH HOH . 
F 5 HOH A 30 330 43 HOH HOH . 
F 5 HOH A 31 331 42 HOH HOH . 
F 5 HOH A 32 332 38 HOH HOH . 
F 5 HOH A 33 333 22 HOH HOH . 
F 5 HOH A 34 334 46 HOH HOH . 
F 5 HOH A 35 335 23 HOH HOH . 
F 5 HOH A 36 336 19 HOH HOH . 
F 5 HOH A 37 337 32 HOH HOH . 
F 5 HOH A 38 338 8 HOH HOH . 
F 5 HOH A 39 339 36 HOH HOH . 
F 5 HOH A 40 340 2 HOH HOH . 
F 5 HOH A 41 341 24 HOH HOH . 
F 5 HOH A 42 342 53 HOH HOH . 
F 5 HOH A 43 343 57 HOH HOH . 
F 5 HOH A 44 344 50 HOH HOH . 
F 5 HOH A 45 345 55 HOH HOH . 
F 5 HOH A 46 346 11 HOH HOH . 
F 5 HOH A 47 347 10 HOH HOH . 
F 5 HOH A 48 348 59 HOH HOH . 
F 5 HOH A 49 349 7 HOH HOH . 
F 5 HOH A 50 350 17 HOH HOH . 
F 5 HOH A 51 351 9 HOH HOH . 
F 5 HOH A 52 352 35 HOH HOH . 
F 5 HOH A 53 353 41 HOH HOH . 
F 5 HOH A 54 354 1 HOH HOH . 
F 5 HOH A 55 355 58 HOH HOH . 
F 5 HOH A 56 356 45 HOH HOH . 
F 5 HOH A 57 357 3 HOH HOH . 
F 5 HOH A 58 358 33 HOH HOH . 
F 5 HOH A 59 359 37 HOH HOH . 
F 5 HOH A 60 360 51 HOH HOH . 
F 5 HOH A 61 361 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 QY1 . . . B 2 8.99 15.973 21.212 1 24.26 ? C7 QY1 201 A 1 
HETATM 2 C C6 QY1 . . . B 2 8.391 12.976 30.128 1 19.77 ? C6 QY1 201 A 1 
HETATM 3 C C1 QY1 . . . B 2 7.13 15.437 19.769 1 27.45 ? C1 QY1 201 A 1 
HETATM 4 C C5 QY1 . . . B 2 10.662 13.408 29.407 1 20.64 ? C5 QY1 201 A 1 
HETATM 5 C C4 QY1 . . . B 2 6.66 13.85 23.099 1 23.38 ? C4 QY1 201 A 1 
HETATM 6 C C3 QY1 . . . B 2 6.56 14.695 20.8 1 26.15 ? C3 QY1 201 A 1 
HETATM 7 C C2 QY1 . . . B 2 8.345 16.077 19.977 1 25.06 ? C2 QY1 201 A 1 
HETATM 8 C C8 QY1 . . . B 2 10.191 13.941 28.212 1 20.81 ? C8 QY1 201 A 1 
HETATM 9 C C9 QY1 . . . B 2 7.916 13.512 28.93 1 20.49 ? C9 QY1 201 A 1 
HETATM 10 C C10 QY1 . . . B 2 7.329 13.769 24.311 1 25.13 ? C10 QY1 201 A 1 
HETATM 11 C C11 QY1 . . . B 2 7.209 14.59 22.043 1 23.15 ? C11 QY1 201 A 1 
HETATM 12 C C12 QY1 . . . B 2 9.766 12.937 30.364 1 21.05 ? C12 QY1 201 A 1 
HETATM 13 C C13 QY1 . . . B 2 8.442 15.238 22.259 1 23.11 ? C13 QY1 201 A 1 
HETATM 14 C C14 QY1 . . . B 2 8.819 13.992 27.979 1 20.5 ? C14 QY1 201 A 1 
HETATM 15 C C15 QY1 . . . B 2 8.529 14.44 24.426 1 22.54 ? C15 QY1 201 A 1 
HETATM 16 C C16 QY1 . . . B 2 10.282 10.819 31.464 1 24.24 ? C16 QY1 201 A 1 
HETATM 17 C C17 QY1 . . . B 2 11.462 13.011 34.53 1 27.72 ? C17 QY1 201 A 1 
HETATM 18 C C18 QY1 . . . B 2 11.172 14.389 33.935 1 28.3 ? C18 QY1 201 A 1 
HETATM 19 C C19 QY1 . . . B 2 10.264 12.134 34.176 1 30.16 ? C19 QY1 201 A 1 
HETATM 20 C C20 QY1 . . . B 2 9.827 14.276 33.222 1 26.18 ? C20 QY1 201 A 1 
HETATM 21 C C21 QY1 . . . B 2 9.656 12.786 32.935 1 28.19 ? C21 QY1 201 A 1 
HETATM 22 C C22 QY1 . . . B 2 9.29 14.381 25.714 1 23.78 ? C22 QY1 201 A 1 
HETATM 23 C C23 QY1 . . . B 2 10.321 12.336 31.644 1 24.52 ? C23 QY1 201 A 1 
HETATM 24 N N24 QY1 . . . B 2 9.095 15.162 23.434 1 22.25 ? N24 QY1 201 A 1 
HETATM 25 O O25 QY1 . . . B 2 9.347 10.082 31.744 1 23.76 ? O25 QY1 201 A 1 
HETATM 26 O O26 QY1 . . . B 2 11.428 10.358 30.899 1 20.47 ? O26 QY1 201 A 1 
HETATM 27 O O27 QY1 . . . B 2 8.38 14.511 26.805 1 20.83 ? O27 QY1 201 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           27 
#