data_6VL4
#
_model_server_result.job_id            c_2SwSQAv85JAb0qnntxog 
_model_server_result.datetime_utc      '2024-11-21 18:00:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vl4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    6VL4 
#
_exptl.entry_id    6VL4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6VL4 
_cell.length_a            76.417 
_cell.length_b            76.417 
_cell.length_c            123.784 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VL4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 60 A TYR 58 1_555 A N CSO 61 A CSO 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale2 A C CSO 61 A CSO 59 1_555 A N ARG 62 A ARG 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 70 n n 
C1 C2 BOG sing 71 n n 
C1 O5 BOG sing 72 n n 
C1 H1 BOG sing 73 n n 
O1 C1' BOG sing 74 n n 
C2 O2 BOG sing 75 n n 
C2 C3 BOG sing 76 n n 
C2 H2 BOG sing 77 n n 
O2 HO2 BOG sing 78 n n 
C3 O3 BOG sing 79 n n 
C3 C4 BOG sing 80 n n 
C3 H3 BOG sing 81 n n 
O3 HO3 BOG sing 82 n n 
C4 O4 BOG sing 83 n n 
C4 C5 BOG sing 84 n n 
C4 H4 BOG sing 85 n n 
O4 HO4 BOG sing 86 n n 
C5 O5 BOG sing 87 n n 
C5 C6 BOG sing 88 n n 
C5 H5 BOG sing 89 n n 
C6 O6 BOG sing 90 n n 
C6 H61 BOG sing 91 n n 
C6 H62 BOG sing 92 n n 
O6 HO6 BOG sing 93 n n 
C1' C2' BOG sing 94 n n 
C1' "H1'1" BOG sing 95 n n 
C1' "H1'2" BOG sing 96 n n 
C2' C3' BOG sing 97 n n 
C2' "H2'1" BOG sing 98 n n 
C2' "H2'2" BOG sing 99 n n 
C3' C4' BOG sing 100 n n 
C3' "H3'1" BOG sing 101 n n 
C3' "H3'2" BOG sing 102 n n 
C4' C5' BOG sing 103 n n 
C4' "H4'1" BOG sing 104 n n 
C4' "H4'2" BOG sing 105 n n 
C5' C6' BOG sing 106 n n 
C5' "H5'1" BOG sing 107 n n 
C5' "H5'2" BOG sing 108 n n 
C6' C7' BOG sing 109 n n 
C6' "H6'1" BOG sing 110 n n 
C6' "H6'2" BOG sing 111 n n 
C7' C8' BOG sing 112 n n 
C7' "H7'1" BOG sing 113 n n 
C7' "H7'2" BOG sing 114 n n 
C8' "H8'1" BOG sing 115 n n 
C8' "H8'2" BOG sing 116 n n 
C8' "H8'3" BOG sing 117 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     6VL4 
_atom_sites.fract_transf_matrix[1][1]    0.013086 
_atom_sites.fract_transf_matrix[1][2]    0.007555 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015111 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008079 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 QY1 A 1 201 1 QY1 SX1 . 
C 3 BOG A 1 202 1 BOG BOG . 
D 4 PG4 A 1 203 2 PG4 PG4 . 
E 4 PG4 A 1 204 3 PG4 PG4 . 
F 5 HOH A 1 301 47 HOH HOH . 
F 5 HOH A 2 302 21 HOH HOH . 
F 5 HOH A 3 303 25 HOH HOH . 
F 5 HOH A 4 304 15 HOH HOH . 
F 5 HOH A 5 305 27 HOH HOH . 
F 5 HOH A 6 306 13 HOH HOH . 
F 5 HOH A 7 307 49 HOH HOH . 
F 5 HOH A 8 308 6 HOH HOH . 
F 5 HOH A 9 309 28 HOH HOH . 
F 5 HOH A 10 310 14 HOH HOH . 
F 5 HOH A 11 311 30 HOH HOH . 
F 5 HOH A 12 312 34 HOH HOH . 
F 5 HOH A 13 313 56 HOH HOH . 
F 5 HOH A 14 314 31 HOH HOH . 
F 5 HOH A 15 315 52 HOH HOH . 
F 5 HOH A 16 316 39 HOH HOH . 
F 5 HOH A 17 317 18 HOH HOH . 
F 5 HOH A 18 318 20 HOH HOH . 
F 5 HOH A 19 319 40 HOH HOH . 
F 5 HOH A 20 320 60 HOH HOH . 
F 5 HOH A 21 321 29 HOH HOH . 
F 5 HOH A 22 322 44 HOH HOH . 
F 5 HOH A 23 323 48 HOH HOH . 
F 5 HOH A 24 324 5 HOH HOH . 
F 5 HOH A 25 325 54 HOH HOH . 
F 5 HOH A 26 326 26 HOH HOH . 
F 5 HOH A 27 327 61 HOH HOH . 
F 5 HOH A 28 328 16 HOH HOH . 
F 5 HOH A 29 329 12 HOH HOH . 
F 5 HOH A 30 330 43 HOH HOH . 
F 5 HOH A 31 331 42 HOH HOH . 
F 5 HOH A 32 332 38 HOH HOH . 
F 5 HOH A 33 333 22 HOH HOH . 
F 5 HOH A 34 334 46 HOH HOH . 
F 5 HOH A 35 335 23 HOH HOH . 
F 5 HOH A 36 336 19 HOH HOH . 
F 5 HOH A 37 337 32 HOH HOH . 
F 5 HOH A 38 338 8 HOH HOH . 
F 5 HOH A 39 339 36 HOH HOH . 
F 5 HOH A 40 340 2 HOH HOH . 
F 5 HOH A 41 341 24 HOH HOH . 
F 5 HOH A 42 342 53 HOH HOH . 
F 5 HOH A 43 343 57 HOH HOH . 
F 5 HOH A 44 344 50 HOH HOH . 
F 5 HOH A 45 345 55 HOH HOH . 
F 5 HOH A 46 346 11 HOH HOH . 
F 5 HOH A 47 347 10 HOH HOH . 
F 5 HOH A 48 348 59 HOH HOH . 
F 5 HOH A 49 349 7 HOH HOH . 
F 5 HOH A 50 350 17 HOH HOH . 
F 5 HOH A 51 351 9 HOH HOH . 
F 5 HOH A 52 352 35 HOH HOH . 
F 5 HOH A 53 353 41 HOH HOH . 
F 5 HOH A 54 354 1 HOH HOH . 
F 5 HOH A 55 355 58 HOH HOH . 
F 5 HOH A 56 356 45 HOH HOH . 
F 5 HOH A 57 357 3 HOH HOH . 
F 5 HOH A 58 358 33 HOH HOH . 
F 5 HOH A 59 359 37 HOH HOH . 
F 5 HOH A 60 360 51 HOH HOH . 
F 5 HOH A 61 361 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . C 3 23.424 -3.453 33.306 1 62.12 ? C1 BOG 202 A 1 
HETATM 2 O O1 BOG . . . C 3 23.204 -3.065 31.951 1 56.36 ? O1 BOG 202 A 1 
HETATM 3 C C2 BOG . . . C 3 24.829 -3.013 33.731 1 68.08 ? C2 BOG 202 A 1 
HETATM 4 O O2 BOG . . . C 3 25.806 -3.746 32.983 1 74.53 ? O2 BOG 202 A 1 
HETATM 5 C C3 BOG . . . C 3 25.07 -3.221 35.233 1 69.89 ? C3 BOG 202 A 1 
HETATM 6 O O3 BOG . . . C 3 26.247 -2.501 35.62 1 72.45 ? O3 BOG 202 A 1 
HETATM 7 C C4 BOG . . . C 3 23.897 -2.78 36.123 1 66.24 ? C4 BOG 202 A 1 
HETATM 8 O O4 BOG . . . C 3 24.067 -3.36 37.423 1 64.71 ? O4 BOG 202 A 1 
HETATM 9 C C5 BOG . . . C 3 22.529 -3.178 35.544 1 61.85 ? C5 BOG 202 A 1 
HETATM 10 O O5 BOG . . . C 3 22.439 -2.836 34.151 1 63.24 ? O5 BOG 202 A 1 
HETATM 11 C C6 BOG . . . C 3 21.385 -2.493 36.283 1 52.76 ? C6 BOG 202 A 1 
HETATM 12 O O6 BOG . . . C 3 20.138 -2.978 35.774 1 37.85 ? O6 BOG 202 A 1 
HETATM 13 C C1' BOG . . . C 3 22.31 -3.943 31.268 1 47.74 ? C1' BOG 202 A 1 
HETATM 14 C C2' BOG . . . C 3 21.434 -3.126 30.328 1 40.14 ? C2' BOG 202 A 1 
HETATM 15 C C3' BOG . . . C 3 20.467 -4.02 29.562 1 33.84 ? C3' BOG 202 A 1 
HETATM 16 C C4' BOG . . . C 3 20.006 -3.343 28.279 1 30.07 ? C4' BOG 202 A 1 
HETATM 17 C C5' BOG . . . C 3 19.18 -4.298 27.427 1 31.73 ? C5' BOG 202 A 1 
HETATM 18 C C6' BOG . . . C 3 19.062 -3.78 25.999 1 35.2 ? C6' BOG 202 A 1 
HETATM 19 C C7' BOG . . . C 3 17.976 -4.525 25.235 1 35.83 ? C7' BOG 202 A 1 
HETATM 20 C C8' BOG . . . C 3 17.787 -3.934 23.855 1 34.88 ? C8' BOG 202 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#