data_6VL4
#
_model_server_result.job_id            yNQZSVXaKr_iIOkWp6QG1Q 
_model_server_result.datetime_utc      '2024-11-21 18:06:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vl4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":204}' 
#
_entry.id    6VL4 
#
_exptl.entry_id    6VL4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              194.226 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'TETRAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6VL4 
_cell.length_a            76.417 
_cell.length_b            76.417 
_cell.length_c            123.784 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VL4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 60 A TYR 58 1_555 A N CSO 61 A CSO 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale2 A C CSO 61 A CSO 59 1_555 A N ARG 62 A ARG 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C8 H18 O5' 
_chem_comp.formula_weight    194.226 
_chem_comp.id                PG4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TETRAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 PG4 sing 299 n n 
O1 HO1 PG4 sing 300 n n 
C1 C2 PG4 sing 301 n n 
C1 H11 PG4 sing 302 n n 
C1 H12 PG4 sing 303 n n 
C2 O2 PG4 sing 304 n n 
C2 H21 PG4 sing 305 n n 
C2 H22 PG4 sing 306 n n 
O2 C3 PG4 sing 307 n n 
C3 C4 PG4 sing 308 n n 
C3 H31 PG4 sing 309 n n 
C3 H32 PG4 sing 310 n n 
C4 O3 PG4 sing 311 n n 
C4 H41 PG4 sing 312 n n 
C4 H42 PG4 sing 313 n n 
O3 C5 PG4 sing 314 n n 
C5 C6 PG4 sing 315 n n 
C5 H51 PG4 sing 316 n n 
C5 H52 PG4 sing 317 n n 
C6 O4 PG4 sing 318 n n 
C6 H61 PG4 sing 319 n n 
C6 H62 PG4 sing 320 n n 
O4 C7 PG4 sing 321 n n 
C7 C8 PG4 sing 322 n n 
C7 H71 PG4 sing 323 n n 
C7 H72 PG4 sing 324 n n 
C8 O5 PG4 sing 325 n n 
C8 H81 PG4 sing 326 n n 
C8 H82 PG4 sing 327 n n 
O5 HO5 PG4 sing 328 n n 
#
_atom_sites.entry_id                     6VL4 
_atom_sites.fract_transf_matrix[1][1]    0.013086 
_atom_sites.fract_transf_matrix[1][2]    0.007555 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015111 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008079 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 QY1 A 1 201 1 QY1 SX1 . 
C 3 BOG A 1 202 1 BOG BOG . 
D 4 PG4 A 1 203 2 PG4 PG4 . 
E 4 PG4 A 1 204 3 PG4 PG4 . 
F 5 HOH A 1 301 47 HOH HOH . 
F 5 HOH A 2 302 21 HOH HOH . 
F 5 HOH A 3 303 25 HOH HOH . 
F 5 HOH A 4 304 15 HOH HOH . 
F 5 HOH A 5 305 27 HOH HOH . 
F 5 HOH A 6 306 13 HOH HOH . 
F 5 HOH A 7 307 49 HOH HOH . 
F 5 HOH A 8 308 6 HOH HOH . 
F 5 HOH A 9 309 28 HOH HOH . 
F 5 HOH A 10 310 14 HOH HOH . 
F 5 HOH A 11 311 30 HOH HOH . 
F 5 HOH A 12 312 34 HOH HOH . 
F 5 HOH A 13 313 56 HOH HOH . 
F 5 HOH A 14 314 31 HOH HOH . 
F 5 HOH A 15 315 52 HOH HOH . 
F 5 HOH A 16 316 39 HOH HOH . 
F 5 HOH A 17 317 18 HOH HOH . 
F 5 HOH A 18 318 20 HOH HOH . 
F 5 HOH A 19 319 40 HOH HOH . 
F 5 HOH A 20 320 60 HOH HOH . 
F 5 HOH A 21 321 29 HOH HOH . 
F 5 HOH A 22 322 44 HOH HOH . 
F 5 HOH A 23 323 48 HOH HOH . 
F 5 HOH A 24 324 5 HOH HOH . 
F 5 HOH A 25 325 54 HOH HOH . 
F 5 HOH A 26 326 26 HOH HOH . 
F 5 HOH A 27 327 61 HOH HOH . 
F 5 HOH A 28 328 16 HOH HOH . 
F 5 HOH A 29 329 12 HOH HOH . 
F 5 HOH A 30 330 43 HOH HOH . 
F 5 HOH A 31 331 42 HOH HOH . 
F 5 HOH A 32 332 38 HOH HOH . 
F 5 HOH A 33 333 22 HOH HOH . 
F 5 HOH A 34 334 46 HOH HOH . 
F 5 HOH A 35 335 23 HOH HOH . 
F 5 HOH A 36 336 19 HOH HOH . 
F 5 HOH A 37 337 32 HOH HOH . 
F 5 HOH A 38 338 8 HOH HOH . 
F 5 HOH A 39 339 36 HOH HOH . 
F 5 HOH A 40 340 2 HOH HOH . 
F 5 HOH A 41 341 24 HOH HOH . 
F 5 HOH A 42 342 53 HOH HOH . 
F 5 HOH A 43 343 57 HOH HOH . 
F 5 HOH A 44 344 50 HOH HOH . 
F 5 HOH A 45 345 55 HOH HOH . 
F 5 HOH A 46 346 11 HOH HOH . 
F 5 HOH A 47 347 10 HOH HOH . 
F 5 HOH A 48 348 59 HOH HOH . 
F 5 HOH A 49 349 7 HOH HOH . 
F 5 HOH A 50 350 17 HOH HOH . 
F 5 HOH A 51 351 9 HOH HOH . 
F 5 HOH A 52 352 35 HOH HOH . 
F 5 HOH A 53 353 41 HOH HOH . 
F 5 HOH A 54 354 1 HOH HOH . 
F 5 HOH A 55 355 58 HOH HOH . 
F 5 HOH A 56 356 45 HOH HOH . 
F 5 HOH A 57 357 3 HOH HOH . 
F 5 HOH A 58 358 33 HOH HOH . 
F 5 HOH A 59 359 37 HOH HOH . 
F 5 HOH A 60 360 51 HOH HOH . 
F 5 HOH A 61 361 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PG4 . . . E 4 15.939 -3.822 35.335 1 36.69 ? O1 PG4 204 A 1 
HETATM 2 C C1 PG4 . . . E 4 16.072 -5.157 34.837 1 37.62 ? C1 PG4 204 A 1 
HETATM 3 C C2 PG4 . . . E 4 17.106 -5.179 33.718 1 36.62 ? C2 PG4 204 A 1 
HETATM 4 O O2 PG4 . . . E 4 17.903 -6.357 33.827 1 46.59 ? O2 PG4 204 A 1 
HETATM 5 C C3 PG4 . . . E 4 18.906 -6.415 32.814 1 43.34 ? C3 PG4 204 A 1 
HETATM 6 C C4 PG4 . . . E 4 19.068 -7.854 32.341 1 44.07 ? C4 PG4 204 A 1 
HETATM 7 O O3 PG4 . . . E 4 19.444 -7.863 30.965 1 45.54 ? O3 PG4 204 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           7 
#