data_6VLM # _model_server_result.job_id L381UTr9vXhWLoA0pJhK5A _model_server_result.datetime_utc '2024-12-17 08:57:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vlm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6VLM # _exptl.entry_id 6VLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.799 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[3-(4-chlorophenyl)[1,3]thiazolo[3,2-a]benzimidazol-2-yl]acetic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.33 _cell.angle_gamma 90 _cell.entry_id 6VLM _cell.length_a 47.9 _cell.length_b 66.77 _cell.length_c 57.43 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C17 H11 Cl N2 O2 S' _chem_comp.formula_weight 342.799 _chem_comp.id R2D _chem_comp.mon_nstd_flag . _chem_comp.name '[3-(4-chlorophenyl)[1,3]thiazolo[3,2-a]benzimidazol-2-yl]acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C16 R2D doub 277 n y C11 C6 R2D sing 278 n y C16 C12 R2D sing 279 n y C12 C7 R2D doub 280 n y C6 N5 R2D sing 281 n y C6 C2 R2D doub 282 n y N5 C1 R2D doub 283 n y C2 C7 R2D sing 284 n y C2 N R2D sing 285 n y C1 N R2D sing 286 n y C1 S R2D sing 287 n y N C R2D sing 288 n y S C3 R2D sing 289 n y C C3 R2D doub 290 n y C C4 R2D sing 291 n n C3 C8 R2D sing 292 n n C4 C9 R2D doub 293 n y C4 C10 R2D sing 294 n y O17 C13 R2D doub 295 n n C9 C14 R2D sing 296 n y C10 C15 R2D doub 297 n y C13 C8 R2D sing 298 n n C13 O R2D sing 299 n n C14 C18 R2D doub 300 n y C15 C18 R2D sing 301 n y C18 CL R2D sing 302 n n C7 H1 R2D sing 303 n n C8 H2 R2D sing 304 n n C8 H3 R2D sing 305 n n C9 H4 R2D sing 306 n n C10 H5 R2D sing 307 n n C11 H6 R2D sing 308 n n C15 H7 R2D sing 309 n n C16 H8 R2D sing 310 n n C12 H9 R2D sing 311 n n C14 H10 R2D sing 312 n n O H11 R2D sing 313 n n # _atom_sites.entry_id 6VLM _atom_sites.fract_transf_matrix[1][1] 0.020877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004563 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 R2D A 1 301 1 R2D 421 . D 2 R2D B 1 301 1 R2D 421 . E 2 R2D B 1 302 1 R2D 421 . F 3 HOH A 1 401 5 HOH HOH . F 3 HOH A 2 402 6 HOH HOH . F 3 HOH A 3 403 7 HOH HOH . F 3 HOH A 4 404 48 HOH HOH . F 3 HOH A 5 405 4 HOH HOH . F 3 HOH A 6 406 1 HOH HOH . F 3 HOH A 7 407 15 HOH HOH . F 3 HOH A 8 408 29 HOH HOH . F 3 HOH A 9 409 31 HOH HOH . F 3 HOH A 10 410 44 HOH HOH . F 3 HOH A 11 411 13 HOH HOH . F 3 HOH A 12 412 12 HOH HOH . F 3 HOH A 13 413 25 HOH HOH . F 3 HOH A 14 414 19 HOH HOH . F 3 HOH A 15 415 49 HOH HOH . F 3 HOH A 16 416 27 HOH HOH . F 3 HOH A 17 417 16 HOH HOH . F 3 HOH A 18 418 20 HOH HOH . F 3 HOH A 19 419 42 HOH HOH . F 3 HOH A 20 420 46 HOH HOH . F 3 HOH A 21 421 24 HOH HOH . F 3 HOH A 22 422 8 HOH HOH . F 3 HOH A 23 423 14 HOH HOH . F 3 HOH A 24 424 34 HOH HOH . F 3 HOH A 25 425 37 HOH HOH . G 3 HOH B 1 401 10 HOH HOH . G 3 HOH B 2 402 2 HOH HOH . G 3 HOH B 3 403 43 HOH HOH . G 3 HOH B 4 404 40 HOH HOH . G 3 HOH B 5 405 47 HOH HOH . G 3 HOH B 6 406 45 HOH HOH . G 3 HOH B 7 407 17 HOH HOH . G 3 HOH B 8 408 41 HOH HOH . G 3 HOH B 9 409 39 HOH HOH . G 3 HOH B 10 410 28 HOH HOH . G 3 HOH B 11 411 30 HOH HOH . G 3 HOH B 12 412 35 HOH HOH . G 3 HOH B 13 413 26 HOH HOH . G 3 HOH B 14 414 9 HOH HOH . G 3 HOH B 15 415 32 HOH HOH . G 3 HOH B 16 416 11 HOH HOH . G 3 HOH B 17 417 21 HOH HOH . G 3 HOH B 18 418 38 HOH HOH . G 3 HOH B 19 419 23 HOH HOH . G 3 HOH B 20 420 18 HOH HOH . G 3 HOH B 21 421 33 HOH HOH . G 3 HOH B 22 422 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 R2D . . . C 2 14.73 -11.574 -8.559 1 63.44 ? C1 R2D 301 A 1 HETATM 2 C C2 R2D . . . C 2 14.053 -11.048 -6.53 1 62.24 ? C2 R2D 301 A 1 HETATM 3 C C3 R2D . . . C 2 12.929 -10.987 -10.013 1 58.77 ? C3 R2D 301 A 1 HETATM 4 C C4 R2D . . . C 2 11.427 -10.242 -8.119 1 56.4 ? C4 R2D 301 A 1 HETATM 5 C C6 R2D . . . C 2 15.329 -11.582 -6.473 1 62.88 ? C6 R2D 301 A 1 HETATM 6 C C7 R2D . . . C 2 13.377 -10.597 -5.417 1 63.94 ? C7 R2D 301 A 1 HETATM 7 C C8 R2D . . . C 2 12.095 -10.758 -11.22 1 55.05 ? C8 R2D 301 A 1 HETATM 8 C C9 R2D . . . C 2 10.671 -11.188 -7.451 1 53.36 ? C9 R2D 301 A 1 HETATM 9 C C10 R2D . . . C 2 10.993 -8.938 -8.244 1 55.7 ? C10 R2D 301 A 1 HETATM 10 C C11 R2D . . . C 2 16.007 -11.721 -5.282 1 63.29 ? C11 R2D 301 A 1 HETATM 11 C C15 R2D . . . C 2 9.771 -8.599 -7.696 1 55.34 ? C15 R2D 301 A 1 HETATM 12 C C16 R2D . . . C 2 15.333 -11.281 -4.158 1 65.25 ? C16 R2D 301 A 1 HETATM 13 O O17 R2D . . . C 2 12.062 -9.304 -13.078 1 54.48 ? O17 R2D 301 A 1 HETATM 14 C C18 R2D . . . C 2 9.016 -9.553 -7.037 1 53.25 ? C18 R2D 301 A 1 HETATM 15 N N R2D . . . C 2 13.736 -11.079 -7.875 1 61.52 ? N R2D 301 A 1 HETATM 16 C C R2D . . . C 2 12.669 -10.715 -8.668 1 59.06 ? C R2D 301 A 1 HETATM 17 S S R2D . . . C 2 14.51 -11.653 -10.257 1 61.6 ? S R2D 301 A 1 HETATM 18 N N5 R2D . . . C 2 15.738 -11.92 -7.762 1 64.75 ? N5 R2D 301 A 1 HETATM 19 C C12 R2D . . . C 2 14.063 -10.731 -4.224 1 66.16 ? C12 R2D 301 A 1 HETATM 20 C C13 R2D . . . C 2 12.543 -9.481 -11.929 1 54.73 ? C13 R2D 301 A 1 HETATM 21 C C14 R2D . . . C 2 9.46 -10.85 -6.897 1 52.76 ? C14 R2D 301 A 1 HETATM 22 O O R2D . . . C 2 13.339 -8.723 -11.313 1 54.99 ? O R2D 301 A 1 HETATM 23 CL CL R2D . . . C 2 7.488 -9.147 -6.366 1 50.03 ? CL R2D 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #