data_6VMX
#
_model_server_result.job_id            bXtGJpR4WDIZDK2Jrwdqrg 
_model_server_result.datetime_utc      '2024-11-09 02:44:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vmx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":301}' 
#
_entry.id    6VMX 
#
_exptl.entry_id    6VMX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VMX 
_cell.length_a            165.459 
_cell.length_b            181.089 
_cell.length_c            190.292 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VMX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? pentameric 5 author_defined_assembly 1 
? pentameric 5 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,K,L,M,N,Q,R,S,T 1 1 
F,G,H,I,J,O,P,U,V,W,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 L N N 
? 7 M N N 
? 7 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 D SG CYS 24 D CYS 23 1_555 D SG CYS 91 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 D SG CYS 136 D CYS 149 1_555 D SG CYS 186 D CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 D SG CYS 161 D CYS 174 1_555 E SG CYS 170 E CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 E SG CYS 23 E CYS 23 1_555 E SG CYS 91 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 E SG CYS 144 E CYS 157 1_555 E SG CYS 209 E CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf7 F SG CYS 101 F CYS 101 1_555 F SG CYS 164 F CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf8 F SG CYS 203 F CYS 203 1_555 F SG CYS 259 F CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf9 G SG CYS 26 G CYS 25 1_555 G SG CYS 81 G CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf10 I SG CYS 24 I CYS 23 1_555 I SG CYS 91 I CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 I SG CYS 136 I CYS 149 1_555 I SG CYS 186 I CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf12 I SG CYS 161 I CYS 174 1_555 J SG CYS 170 J CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf13 J SG CYS 23 J CYS 23 1_555 J SG CYS 91 J CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf14 J SG CYS 144 J CYS 157 1_555 J SG CYS 209 J CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6VMX 
_atom_sites.fract_transf_matrix[1][1]    0.006044 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005522 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005255 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 6 PEG A 1 301 301 PEG PEG . 
L 7 EDO A 1 302 401 EDO EDO . 
M 7 EDO E 1 301 314 EDO EDO . 
N 7 EDO E 1 302 414 EDO EDO . 
O 6 PEG F 1 301 301 PEG PEG . 
P 6 PEG J 1 301 314 PEG PEG . 
Q 8 HOH A 1 401 120 HOH HOH . 
Q 8 HOH A 2 402 44 HOH HOH . 
Q 8 HOH A 3 403 105 HOH HOH . 
Q 8 HOH A 4 404 78 HOH HOH . 
Q 8 HOH A 5 405 68 HOH HOH . 
Q 8 HOH A 6 406 104 HOH HOH . 
Q 8 HOH A 7 407 14 HOH HOH . 
Q 8 HOH A 8 408 84 HOH HOH . 
Q 8 HOH A 9 409 29 HOH HOH . 
Q 8 HOH A 10 410 121 HOH HOH . 
Q 8 HOH A 11 411 1 HOH HOH . 
Q 8 HOH A 12 412 83 HOH HOH . 
Q 8 HOH A 13 413 69 HOH HOH . 
Q 8 HOH A 14 414 106 HOH HOH . 
Q 8 HOH A 15 415 43 HOH HOH . 
Q 8 HOH A 16 416 34 HOH HOH . 
Q 8 HOH A 17 417 38 HOH HOH . 
R 8 HOH B 1 101 131 HOH HOH . 
R 8 HOH B 2 102 45 HOH HOH . 
R 8 HOH B 3 103 82 HOH HOH . 
R 8 HOH B 4 104 17 HOH HOH . 
R 8 HOH B 5 105 64 HOH HOH . 
S 8 HOH D 1 301 80 HOH HOH . 
S 8 HOH D 2 302 132 HOH HOH . 
S 8 HOH D 3 303 10 HOH HOH . 
S 8 HOH D 4 304 23 HOH HOH . 
S 8 HOH D 5 305 71 HOH HOH . 
S 8 HOH D 6 306 113 HOH HOH . 
S 8 HOH D 7 307 51 HOH HOH . 
S 8 HOH D 8 308 107 HOH HOH . 
S 8 HOH D 9 309 39 HOH HOH . 
T 8 HOH E 1 401 130 HOH HOH . 
T 8 HOH E 2 402 73 HOH HOH . 
T 8 HOH E 3 403 133 HOH HOH . 
T 8 HOH E 4 404 28 HOH HOH . 
T 8 HOH E 5 405 108 HOH HOH . 
T 8 HOH E 6 406 62 HOH HOH . 
T 8 HOH E 7 407 117 HOH HOH . 
T 8 HOH E 8 408 129 HOH HOH . 
T 8 HOH E 9 409 25 HOH HOH . 
T 8 HOH E 10 410 27 HOH HOH . 
T 8 HOH E 11 411 72 HOH HOH . 
T 8 HOH E 12 412 128 HOH HOH . 
T 8 HOH E 13 413 35 HOH HOH . 
T 8 HOH E 14 414 49 HOH HOH . 
T 8 HOH E 15 415 26 HOH HOH . 
T 8 HOH E 16 416 116 HOH HOH . 
T 8 HOH E 17 417 3 HOH HOH . 
T 8 HOH E 18 418 110 HOH HOH . 
T 8 HOH E 19 419 93 HOH HOH . 
T 8 HOH E 20 420 4 HOH HOH . 
T 8 HOH E 21 421 42 HOH HOH . 
T 8 HOH E 22 422 59 HOH HOH . 
T 8 HOH E 23 423 89 HOH HOH . 
T 8 HOH E 24 424 57 HOH HOH . 
T 8 HOH E 25 425 52 HOH HOH . 
T 8 HOH E 26 426 100 HOH HOH . 
T 8 HOH E 27 427 21 HOH HOH . 
T 8 HOH E 28 428 46 HOH HOH . 
T 8 HOH E 29 429 115 HOH HOH . 
T 8 HOH E 30 430 56 HOH HOH . 
T 8 HOH E 31 431 70 HOH HOH . 
T 8 HOH E 32 432 125 HOH HOH . 
T 8 HOH E 33 433 96 HOH HOH . 
U 8 HOH F 1 401 127 HOH HOH . 
U 8 HOH F 2 402 50 HOH HOH . 
U 8 HOH F 3 403 63 HOH HOH . 
U 8 HOH F 4 404 13 HOH HOH . 
U 8 HOH F 5 405 30 HOH HOH . 
U 8 HOH F 6 406 65 HOH HOH . 
U 8 HOH F 7 407 2 HOH HOH . 
U 8 HOH F 8 408 67 HOH HOH . 
U 8 HOH F 9 409 76 HOH HOH . 
U 8 HOH F 10 410 118 HOH HOH . 
U 8 HOH F 11 411 18 HOH HOH . 
U 8 HOH F 12 412 101 HOH HOH . 
U 8 HOH F 13 413 123 HOH HOH . 
U 8 HOH F 14 414 37 HOH HOH . 
U 8 HOH F 15 415 7 HOH HOH . 
U 8 HOH F 16 416 99 HOH HOH . 
U 8 HOH F 17 417 134 HOH HOH . 
U 8 HOH F 18 418 114 HOH HOH . 
U 8 HOH F 19 419 32 HOH HOH . 
V 8 HOH G 1 101 88 HOH HOH . 
V 8 HOH G 2 102 92 HOH HOH . 
V 8 HOH G 3 103 85 HOH HOH . 
V 8 HOH G 4 104 36 HOH HOH . 
V 8 HOH G 5 105 41 HOH HOH . 
W 8 HOH I 1 301 109 HOH HOH . 
W 8 HOH I 2 302 15 HOH HOH . 
W 8 HOH I 3 303 8 HOH HOH . 
W 8 HOH I 4 304 95 HOH HOH . 
W 8 HOH I 5 305 20 HOH HOH . 
W 8 HOH I 6 306 102 HOH HOH . 
W 8 HOH I 7 307 111 HOH HOH . 
W 8 HOH I 8 308 11 HOH HOH . 
W 8 HOH I 9 309 55 HOH HOH . 
W 8 HOH I 10 310 24 HOH HOH . 
W 8 HOH I 11 311 124 HOH HOH . 
W 8 HOH I 12 312 74 HOH HOH . 
W 8 HOH I 13 313 75 HOH HOH . 
W 8 HOH I 14 314 61 HOH HOH . 
W 8 HOH I 15 315 77 HOH HOH . 
W 8 HOH I 16 316 81 HOH HOH . 
W 8 HOH I 17 317 5 HOH HOH . 
X 8 HOH J 1 401 12 HOH HOH . 
X 8 HOH J 2 402 19 HOH HOH . 
X 8 HOH J 3 403 6 HOH HOH . 
X 8 HOH J 4 404 16 HOH HOH . 
X 8 HOH J 5 405 9 HOH HOH . 
X 8 HOH J 6 406 94 HOH HOH . 
X 8 HOH J 7 407 97 HOH HOH . 
X 8 HOH J 8 408 54 HOH HOH . 
X 8 HOH J 9 409 48 HOH HOH . 
X 8 HOH J 10 410 126 HOH HOH . 
X 8 HOH J 11 411 22 HOH HOH . 
X 8 HOH J 12 412 53 HOH HOH . 
X 8 HOH J 13 413 66 HOH HOH . 
X 8 HOH J 14 414 79 HOH HOH . 
X 8 HOH J 15 415 103 HOH HOH . 
X 8 HOH J 16 416 31 HOH HOH . 
X 8 HOH J 17 417 122 HOH HOH . 
X 8 HOH J 18 418 112 HOH HOH . 
X 8 HOH J 19 419 90 HOH HOH . 
X 8 HOH J 20 420 60 HOH HOH . 
X 8 HOH J 21 421 33 HOH HOH . 
X 8 HOH J 22 422 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . M 7 -105.23 -77.621 1.08 1 24.41 ? C1 EDO 301 E 1 
HETATM 2 O O1 EDO . . . M 7 -104.766 -78.887 1.522 1 24.61 ? O1 EDO 301 E 1 
HETATM 3 C C2 EDO . . . M 7 -104.395 -77.167 -0.141 1 24.09 ? C2 EDO 301 E 1 
HETATM 4 O O2 EDO . . . M 7 -104.888 -75.929 -0.623 1 23.4 ? O2 EDO 301 E 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#