data_6VN3 # _model_server_result.job_id 1L4SM87btzn-fOTngrLOqg _model_server_result.datetime_utc '2024-11-07 16:02:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vn3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 6VN3 # _exptl.entry_id 6VN3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 473.948 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{[7-(5-chloro-2-{[(3R,4S)-4-fluoropyrrolidin-3-yl]oxy}-3-methylphenyl)thieno[3,2-b]pyridin-2-yl]methyl}-1H-pyrrole-2,5-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.62 _cell.angle_gamma 90 _cell.entry_id 6VN3 _cell.length_a 70.51 _cell.length_b 65.834 _cell.length_c 85.077 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VN3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 110 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 315 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 110 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 315 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.067 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H21 Cl F N3 O3 S' _chem_comp.formula_weight 473.948 _chem_comp.id R3Y _chem_comp.mon_nstd_flag . _chem_comp.name 1-{[7-(5-chloro-2-{[(3R,4S)-4-fluoropyrrolidin-3-yl]oxy}-3-methylphenyl)thieno[3,2-b]pyridin-2-yl]methyl}-1H-pyrrole-2,5-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 R3Y sing 277 n n F16 C14 R3Y sing 278 n n C2 C3 R3Y doub 279 n y C2 C7 R3Y sing 280 n y C3 C4 R3Y sing 281 n y C14 C13 R3Y sing 282 n n C14 C9 R3Y sing 283 n n O8 C7 R3Y sing 284 n n O8 C9 R3Y sing 285 n n C7 C6 R3Y doub 286 n y C4 CL34 R3Y sing 287 n n C4 C5 R3Y doub 288 n y C13 N12 R3Y sing 289 n n C9 C11 R3Y sing 290 n n C11 N12 R3Y sing 291 n n C6 C5 R3Y sing 292 n y C6 C17 R3Y sing 293 n n C17 C18 R3Y doub 294 n y C17 C25 R3Y sing 295 n y C18 C19 R3Y sing 296 n y C25 S24 R3Y sing 297 n y C25 C21 R3Y doub 298 n y S24 C23 R3Y sing 299 n y C19 N20 R3Y doub 300 n y O29 C28 R3Y doub 301 n n C30 C28 R3Y sing 302 n n C30 C31 R3Y sing 303 n n C28 N27 R3Y sing 304 n n C21 N20 R3Y sing 305 n y C21 C22 R3Y sing 306 n y C23 C22 R3Y doub 307 n y C23 C26 R3Y sing 308 n n C31 C32 R3Y sing 309 n n N27 C26 R3Y sing 310 n n N27 C32 R3Y sing 311 n n C32 O33 R3Y doub 312 n n C1 H1 R3Y sing 313 n n C1 H2 R3Y sing 314 n n C1 H3 R3Y sing 315 n n C3 H4 R3Y sing 316 n n C5 H5 R3Y sing 317 n n C11 H6 R3Y sing 318 n n C11 H7 R3Y sing 319 n n C18 H8 R3Y sing 320 n n C19 H9 R3Y sing 321 n n C30 H10 R3Y sing 322 n n C31 H11 R3Y sing 323 n n C9 H12 R3Y sing 324 n n N12 H13 R3Y sing 325 n n C13 H15 R3Y sing 326 n n C13 H16 R3Y sing 327 n n C14 H17 R3Y sing 328 n n C22 H18 R3Y sing 329 n n C26 H19 R3Y sing 330 n n C26 H20 R3Y sing 331 n n C30 H14 R3Y sing 332 n n C31 H21 R3Y sing 333 n n # _atom_sites.entry_id 6VN3 _atom_sites.fract_transf_matrix[1][1] 0.014182 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001147 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011792 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 R3Y A 1 601 1 R3Y INX . D 2 R3Y B 1 601 2 R3Y INX . E 3 HOH A 1 701 13 HOH HOH . E 3 HOH A 2 702 8 HOH HOH . E 3 HOH A 3 703 1 HOH HOH . E 3 HOH A 4 704 5 HOH HOH . F 3 HOH B 1 701 10 HOH HOH . F 3 HOH B 2 702 12 HOH HOH . F 3 HOH B 3 703 7 HOH HOH . F 3 HOH B 4 704 11 HOH HOH . F 3 HOH B 5 705 9 HOH HOH . F 3 HOH B 6 706 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 R3Y . . . D 2 6.66 3.783 96.423 1 60.06 ? C1 R3Y 601 B 1 HETATM 2 C C2 R3Y . . . D 2 5.986 3.268 95.169 1 57.89 ? C2 R3Y 601 B 1 HETATM 3 C C3 R3Y . . . D 2 5.739 1.891 95.106 1 46.39 ? C3 R3Y 601 B 1 HETATM 4 C C4 R3Y . . . D 2 5.123 1.337 93.991 1 42.34 ? C4 R3Y 601 B 1 HETATM 5 C C5 R3Y . . . D 2 4.758 2.151 92.932 1 46.9 ? C5 R3Y 601 B 1 HETATM 6 C C6 R3Y . . . D 2 4.989 3.532 92.948 1 54.07 ? C6 R3Y 601 B 1 HETATM 7 C C7 R3Y . . . D 2 5.607 4.122 94.1 1 55.65 ? C7 R3Y 601 B 1 HETATM 8 C C11 R3Y . . . D 2 5.14 7.799 93.713 1 68.12 ? C11 R3Y 601 B 1 HETATM 9 C C17 R3Y . . . D 2 4.551 4.342 91.772 1 59.57 ? C17 R3Y 601 B 1 HETATM 10 C C18 R3Y . . . D 2 5.459 5.203 91.124 1 49.4 ? C18 R3Y 601 B 1 HETATM 11 C C19 R3Y . . . D 2 5.018 5.987 90.06 1 56.05 ? C19 R3Y 601 B 1 HETATM 12 C C21 R3Y . . . D 2 2.825 5.163 90.233 1 62.54 ? C21 R3Y 601 B 1 HETATM 13 C C23 R3Y . . . D 2 0.749 4.186 90.662 1 65.39 ? C23 R3Y 601 B 1 HETATM 14 O O29 R3Y . . . D 2 -1.251 3.263 93.321 1 50.16 ? O29 R3Y 601 B 1 HETATM 15 C C30 R3Y . . . D 2 -2.259 5.43 93.601 1 58.84 ? C30 R3Y 601 B 1 HETATM 16 C C31 R3Y . . . D 2 -2.452 6.547 92.559 1 66.1 ? C31 R3Y 601 B 1 HETATM 17 C C32 R3Y . . . D 2 -1.842 5.973 91.298 1 67.62 ? C32 R3Y 601 B 1 HETATM 18 O O8 R3Y . . . D 2 5.839 5.478 94.194 1 60.09 ? O8 R3Y 601 B 1 HETATM 19 C C9 R3Y . . . D 2 4.723 6.412 94.246 1 63.41 ? C9 R3Y 601 B 1 HETATM 20 N N12 R3Y . . . D 2 4.079 8.673 94.279 1 71.64 ? N12 R3Y 601 B 1 HETATM 21 C C13 R3Y . . . D 2 3.328 8.029 95.387 1 70.83 ? C13 R3Y 601 B 1 HETATM 22 C C14 R3Y . . . D 2 4.138 6.734 95.641 1 77.03 ? C14 R3Y 601 B 1 HETATM 23 F F16 R3Y . . . D 2 5.109 6.983 96.603 1 85 ? F16 R3Y 601 B 1 HETATM 24 N N20 R3Y . . . D 2 3.762 5.95 89.645 1 63.79 ? N20 R3Y 601 B 1 HETATM 25 C C22 R3Y . . . D 2 1.42 5.028 89.904 1 61.64 ? C22 R3Y 601 B 1 HETATM 26 S S24 R3Y . . . D 2 1.785 3.45 91.861 1 69.15 ? S24 R3Y 601 B 1 HETATM 27 C C25 R3Y . . . D 2 3.196 4.34 91.317 1 67.57 ? C25 R3Y 601 B 1 HETATM 28 C C26 R3Y . . . D 2 -0.724 3.904 90.533 1 60.03 ? C26 R3Y 601 B 1 HETATM 29 N N27 R3Y . . . D 2 -1.383 4.733 91.552 1 60.69 ? N27 R3Y 601 B 1 HETATM 30 C C28 R3Y . . . D 2 -1.568 4.33 92.83 1 61.42 ? C28 R3Y 601 B 1 HETATM 31 O O33 R3Y . . . D 2 -1.797 6.565 90.237 1 62.98 ? O33 R3Y 601 B 1 HETATM 32 CL CL34 R3Y . . . D 2 4.805 -0.365 93.896 1 55.27 ? CL34 R3Y 601 B 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #