data_6VN4 # _model_server_result.job_id Oj1gQ9UR4Pa9exPIwDOWjA _model_server_result.datetime_utc '2024-11-07 13:34:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vn4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 6VN4 # _exptl.entry_id 6VN4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.489 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-({4-hydroxy-1-[(2R)-2-methyl-3-phenylpropanoyl]piperidin-4-yl}methyl)quinazolin-4(3H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.4 _cell.angle_gamma 90 _cell.entry_id 6VN4 _cell.length_a 75.38 _cell.length_b 70.715 _cell.length_c 78.551 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VN4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 110 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 315 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 110 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 315 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.067 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H27 N3 O3' _chem_comp.formula_weight 405.489 _chem_comp.id R4D _chem_comp.mon_nstd_flag . _chem_comp.name 3-({4-hydroxy-1-[(2R)-2-methyl-3-phenylpropanoyl]piperidin-4-yl}methyl)quinazolin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 R4D sing 277 n n C3 C2 R4D sing 278 n n C3 C4 R4D sing 279 n n C2 C10 R4D sing 280 n n C5 C4 R4D doub 281 n y C5 C6 R4D sing 282 n y C4 C9 R4D sing 283 n y C6 C7 R4D doub 284 n y C10 O11 R4D doub 285 n n C10 N12 R4D sing 286 n n C9 C8 R4D doub 287 n y C7 C8 R4D sing 288 n y C13 N12 R4D sing 289 n n C13 C14 R4D sing 290 n n N12 C18 R4D sing 291 n n C14 C15 R4D sing 292 n n N22 C21 R4D doub 293 n n N22 C23 R4D sing 294 n n C24 C23 R4D doub 295 n y C24 C25 R4D sing 296 n y C18 C17 R4D sing 297 n n C21 N20 R4D sing 298 n n C23 C28 R4D sing 299 n y C25 C26 R4D doub 300 n y C15 C17 R4D sing 301 n n C15 O16 R4D sing 302 n n C15 C19 R4D sing 303 n n N20 C19 R4D sing 304 n n N20 C29 R4D sing 305 n n C28 C29 R4D sing 306 n n C28 C27 R4D doub 307 n y C26 C27 R4D sing 308 n y C29 O30 R4D doub 309 n n C1 H1 R4D sing 310 n n C1 H2 R4D sing 311 n n C1 H3 R4D sing 312 n n C2 H4 R4D sing 313 n n C3 H5 R4D sing 314 n n C3 H6 R4D sing 315 n n C5 H7 R4D sing 316 n n C6 H8 R4D sing 317 n n C7 H9 R4D sing 318 n n C8 H10 R4D sing 319 n n C17 H11 R4D sing 320 n n C17 H12 R4D sing 321 n n C18 H13 R4D sing 322 n n C18 H14 R4D sing 323 n n C19 H15 R4D sing 324 n n C19 H16 R4D sing 325 n n C21 H17 R4D sing 326 n n C24 H18 R4D sing 327 n n C27 H19 R4D sing 328 n n C9 H20 R4D sing 329 n n C13 H21 R4D sing 330 n n C13 H22 R4D sing 331 n n C14 H23 R4D sing 332 n n C14 H24 R4D sing 333 n n O16 H25 R4D sing 334 n n C25 H26 R4D sing 335 n n C26 H27 R4D sing 336 n n # _atom_sites.entry_id 6VN4 _atom_sites.fract_transf_matrix[1][1] 0.013266 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000789 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 R4D A 1 601 1 R4D INX . D 2 R4D B 1 601 2 R4D INX . E 3 HOH A 1 701 17 HOH HOH . E 3 HOH A 2 702 28 HOH HOH . E 3 HOH A 3 703 10 HOH HOH . E 3 HOH A 4 704 16 HOH HOH . E 3 HOH A 5 705 26 HOH HOH . E 3 HOH A 6 706 5 HOH HOH . E 3 HOH A 7 707 8 HOH HOH . E 3 HOH A 8 708 3 HOH HOH . E 3 HOH A 9 709 20 HOH HOH . E 3 HOH A 10 710 9 HOH HOH . E 3 HOH A 11 711 6 HOH HOH . E 3 HOH A 12 712 18 HOH HOH . E 3 HOH A 13 713 19 HOH HOH . E 3 HOH A 14 714 27 HOH HOH . F 3 HOH B 1 701 1 HOH HOH . F 3 HOH B 2 702 14 HOH HOH . F 3 HOH B 3 703 22 HOH HOH . F 3 HOH B 4 704 12 HOH HOH . F 3 HOH B 5 705 2 HOH HOH . F 3 HOH B 6 706 11 HOH HOH . F 3 HOH B 7 707 13 HOH HOH . F 3 HOH B 8 708 21 HOH HOH . F 3 HOH B 9 709 4 HOH HOH . F 3 HOH B 10 710 15 HOH HOH . F 3 HOH B 11 711 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 R4D . . . D 2 95.091 0.068 133.484 1 67.67 ? C1 R4D 601 B 1 HETATM 2 C C2 R4D . . . D 2 95.841 1.06 132.586 1 67.12 ? C2 R4D 601 B 1 HETATM 3 C C3 R4D . . . D 2 95.556 2.535 132.996 1 66.78 ? C3 R4D 601 B 1 HETATM 4 C C4 R4D . . . D 2 96.169 3.547 132.039 1 69.44 ? C4 R4D 601 B 1 HETATM 5 C C5 R4D . . . D 2 97.501 3.874 132.218 1 62.86 ? C5 R4D 601 B 1 HETATM 6 C C6 R4D . . . D 2 98.147 4.78 131.384 1 52.02 ? C6 R4D 601 B 1 HETATM 7 C C7 R4D . . . D 2 97.442 5.382 130.35 1 53.81 ? C7 R4D 601 B 1 HETATM 8 C C8 R4D . . . D 2 96.098 5.062 130.15 1 53.26 ? C8 R4D 601 B 1 HETATM 9 C C15 R4D . . . D 2 98.33 1.032 127.929 1 47.67 ? C15 R4D 601 B 1 HETATM 10 C C17 R4D . . . D 2 96.831 1.356 127.772 1 51.3 ? C17 R4D 601 B 1 HETATM 11 C C18 R4D . . . D 2 95.937 0.466 128.667 1 48.05 ? C18 R4D 601 B 1 HETATM 12 C C19 R4D . . . D 2 99.215 1.969 127.065 1 43.76 ? C19 R4D 601 B 1 HETATM 13 C C21 R4D . . . D 2 101.248 2.359 128.346 1 65.53 ? C21 R4D 601 B 1 HETATM 14 N N22 R4D . . . D 2 102.447 2.104 128.804 1 79.73 ? N22 R4D 601 B 1 HETATM 15 C C23 R4D . . . D 2 103.26 1.169 128.227 1 67.8 ? C23 R4D 601 B 1 HETATM 16 C C24 R4D . . . D 2 104.558 0.939 128.713 1 55.89 ? C24 R4D 601 B 1 HETATM 17 C C27 R4D . . . D 2 103.651 -0.467 126.469 1 69.74 ? C27 R4D 601 B 1 HETATM 18 C C9 R4D . . . D 2 95.457 4.15 130.993 1 63.68 ? C9 R4D 601 B 1 HETATM 19 C C10 R4D . . . D 2 95.481 0.883 131.112 1 62.64 ? C10 R4D 601 B 1 HETATM 20 O O11 R4D . . . D 2 94.319 1.114 130.847 1 52.24 ? O11 R4D 601 B 1 HETATM 21 N N12 R4D . . . D 2 96.35 0.587 130.1 1 55.26 ? N12 R4D 601 B 1 HETATM 22 C C13 R4D . . . D 2 97.769 0.261 130.311 1 47.94 ? C13 R4D 601 B 1 HETATM 23 C C14 R4D . . . D 2 98.669 1.107 129.428 1 47.86 ? C14 R4D 601 B 1 HETATM 24 O O16 R4D . . . D 2 98.554 -0.292 127.459 1 45.91 ? O16 R4D 601 B 1 HETATM 25 N N20 R4D . . . D 2 100.649 1.672 127.318 1 61.88 ? N20 R4D 601 B 1 HETATM 26 C C25 R4D . . . D 2 105.375 0.011 128.1 1 58.55 ? C25 R4D 601 B 1 HETATM 27 C C26 R4D . . . D 2 104.926 -0.69 126.98 1 75.03 ? C26 R4D 601 B 1 HETATM 28 C C28 R4D . . . D 2 102.799 0.485 127.055 1 71.31 ? C28 R4D 601 B 1 HETATM 29 C C29 R4D . . . D 2 101.394 0.74 126.615 1 65.04 ? C29 R4D 601 B 1 HETATM 30 O O30 R4D . . . D 2 100.906 0.075 125.728 1 72.93 ? O30 R4D 601 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 30 #