data_6VN5 # _model_server_result.job_id T-Gh1RmTlhq_sN7z2j7mgQ _model_server_result.datetime_utc '2024-11-07 16:02:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vn5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 6VN5 # _exptl.entry_id 6VN5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.822 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R)-7-(2-aminopyridin-4-yl)-5-chloro-2,3-dihydro-1-benzofuran-2-yl](piperazin-1-yl)methanone' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.58 _cell.angle_gamma 90 _cell.entry_id 6VN5 _cell.length_a 70.43 _cell.length_b 65.078 _cell.length_c 85.189 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VN5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 110 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 315 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 110 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 315 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.044 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C18 H19 Cl N4 O2' _chem_comp.formula_weight 358.822 _chem_comp.id R41 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R)-7-(2-aminopyridin-4-yl)-5-chloro-2,3-dihydro-1-benzofuran-2-yl](piperazin-1-yl)methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C4 R41 doub 277 n y N3 C2 R41 sing 278 n y N1 C2 R41 sing 279 n n C4 C5 R41 sing 280 n y C2 C7 R41 doub 281 n y C5 C6 R41 doub 282 n y C7 C6 R41 sing 283 n y C6 C8 R41 sing 284 n n C8 C9 R41 doub 285 n y C8 C17 R41 sing 286 n y C9 C10 R41 sing 287 n y C22 N23 R41 sing 288 n n C22 C21 R41 sing 289 n n C17 O16 R41 sing 290 n n C17 C13 R41 doub 291 n y CL11 C10 R41 sing 292 n n C10 C12 R41 doub 293 n y O16 C15 R41 sing 294 n n N23 C24 R41 sing 295 n n C21 N20 R41 sing 296 n n C13 C12 R41 sing 297 n y C13 C14 R41 sing 298 n n C15 C14 R41 sing 299 n n C15 C18 R41 sing 300 n n C24 C25 R41 sing 301 n n N20 C18 R41 sing 302 n n N20 C25 R41 sing 303 n n C18 O19 R41 doub 304 n n C4 H1 R41 sing 305 n n C5 H2 R41 sing 306 n n C7 H3 R41 sing 307 n n C12 H4 R41 sing 308 n n C15 H5 R41 sing 309 n n C21 H6 R41 sing 310 n n C21 H7 R41 sing 311 n n C24 H8 R41 sing 312 n n C24 H9 R41 sing 313 n n N1 H10 R41 sing 314 n n N1 H11 R41 sing 315 n n C9 H12 R41 sing 316 n n C14 H13 R41 sing 317 n n C14 H14 R41 sing 318 n n C22 H15 R41 sing 319 n n C22 H16 R41 sing 320 n n N23 H17 R41 sing 321 n n C25 H19 R41 sing 322 n n C25 H20 R41 sing 323 n n # _atom_sites.entry_id 6VN5 _atom_sites.fract_transf_matrix[1][1] 0.014198 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000888 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015366 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 R41 A 1 601 1 R41 INX . D 2 R41 B 1 601 2 R41 INX . E 3 HOH A 1 701 1 HOH HOH . E 3 HOH A 2 702 3 HOH HOH . F 3 HOH B 1 701 2 HOH HOH . F 3 HOH B 2 702 5 HOH HOH . F 3 HOH B 3 703 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 R41 . . . D 2 26.73 1.654 32.189 1 77.48 ? C2 R41 601 B 1 HETATM 2 C C4 R41 . . . D 2 24.884 2.623 31.161 1 76.79 ? C4 R41 601 B 1 HETATM 3 C C5 R41 . . . D 2 25.062 1.88 30.011 1 73.1 ? C5 R41 601 B 1 HETATM 4 C C6 R41 . . . D 2 26.139 0.977 29.944 1 76.52 ? C6 R41 601 B 1 HETATM 5 C C7 R41 . . . D 2 26.983 0.869 31.066 1 78.48 ? C7 R41 601 B 1 HETATM 6 C C8 R41 . . . D 2 26.37 0.152 28.729 1 80.72 ? C8 R41 601 B 1 HETATM 7 C C12 R41 . . . D 2 26.814 -1.479 26.507 1 73.7 ? C12 R41 601 B 1 HETATM 8 C C15 R41 . . . D 2 26.199 2.149 25.621 1 85.18 ? C15 R41 601 B 1 HETATM 9 C C17 R41 . . . D 2 26.255 0.684 27.424 1 84.23 ? C17 R41 601 B 1 HETATM 10 C C18 R41 . . . D 2 27.46 2.987 25.459 1 85.05 ? C18 R41 601 B 1 HETATM 11 C C21 R41 . . . D 2 26.62 4.791 27.007 1 82.43 ? C21 R41 601 B 1 HETATM 12 C C24 R41 . . . D 2 29.469 5.246 27.358 1 93.04 ? C24 R41 601 B 1 HETATM 13 N N1 R41 . . . D 2 27.551 1.561 33.307 1 75.88 ? N1 R41 601 B 1 HETATM 14 N N3 R41 . . . D 2 25.703 2.498 32.197 1 79.93 ? N3 R41 601 B 1 HETATM 15 C C9 R41 . . . D 2 26.706 -1.189 28.888 1 74.52 ? C9 R41 601 B 1 HETATM 16 C C10 R41 . . . D 2 26.929 -1.995 27.794 1 68.37 ? C10 R41 601 B 1 HETATM 17 CL CL11 R41 . . . D 2 27.342 -3.648 28.079 1 74.7 ? CL11 R41 601 B 1 HETATM 18 C C13 R41 . . . D 2 26.479 -0.146 26.327 1 80.68 ? C13 R41 601 B 1 HETATM 19 C C14 R41 . . . D 2 26.282 0.692 25.075 1 83.5 ? C14 R41 601 B 1 HETATM 20 O O16 R41 . . . D 2 25.934 1.939 27.023 1 88.96 ? O16 R41 601 B 1 HETATM 21 O O19 R41 . . . D 2 28.343 2.579 24.732 1 85.01 ? O19 R41 601 B 1 HETATM 22 N N20 R41 . . . D 2 27.62 4.19 26.095 1 86.71 ? N20 R41 601 B 1 HETATM 23 C C22 R41 . . . D 2 27.245 4.7 28.398 1 83.58 ? C22 R41 601 B 1 HETATM 24 N N23 R41 . . . D 2 28.439 5.554 28.371 1 89.34 ? N23 R41 601 B 1 HETATM 25 C C25 R41 . . . D 2 28.85 5.011 25.957 1 90.85 ? C25 R41 601 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #