data_6VN6
#
_model_server_result.job_id            oyWzzm7bgAPHkA9hvAk8RQ 
_model_server_result.datetime_utc      '2025-03-04 19:14:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vn6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    6VN6 
#
_exptl.entry_id    6VN6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              508.417 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R)-5-chloro-7-{2-[(2S)-1-chloro-2,3-dihydroxypropan-2-yl]thieno[3,2-b]pyridin-7-yl}-2,3-dihydro-1-benzofuran-2-yl](piperazin-1-yl)methanone' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.04 
_cell.angle_gamma         90 
_cell.entry_id            6VN6 
_cell.length_a            70.301 
_cell.length_b            65.68 
_cell.length_c            85.313 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VN6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 110 A CYS 315 1_555 B SG CYS 110 B CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc1 A SG CYS 95 A CYS 300 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc2 A OD1 ASP 144 A ASP 349 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc3 A ND1 HIS 198 A HIS 403 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc4 B SG CYS 95 B CYS 300 1_555 F ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc5 B OD1 ASP 144 B ASP 349 1_555 F ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc6 B ND1 HIS 198 B HIS 403 1_555 F ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
#
_chem_comp.formula           'C23 H23 Cl2 N3 O4 S' 
_chem_comp.formula_weight    508.417 
_chem_comp.id                R4J 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R)-5-chloro-7-{2-[(2S)-1-chloro-2,3-dihydroxypropan-2-yl]thieno[3,2-b]pyridin-7-yl}-2,3-dihydro-1-benzofuran-2-yl](piperazin-1-yl)methanone' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O28 C27 R4J doub 275 n n 
C24 C22 R4J sing 276 n n 
C24 C25 R4J sing 277 n n 
C27 C22 R4J sing 278 n n 
C27 N29 R4J sing 279 n n 
C22 O21 R4J sing 280 n n 
C30 N29 R4J sing 281 n n 
C30 C31 R4J sing 282 n n 
N29 C34 R4J sing 283 n n 
C25 C26 R4J doub 284 n y 
C25 C20 R4J sing 285 n y 
C26 C2 R4J sing 286 n y 
C34 C33 R4J sing 287 n n 
O21 C20 R4J sing 288 n n 
C31 N32 R4J sing 289 n n 
C20 C4 R4J doub 290 n y 
C2 CL1 R4J sing 291 n n 
C2 C3 R4J doub 292 n y 
C33 N32 R4J sing 293 n n 
C4 C3 R4J sing 294 n y 
C4 C5 R4J sing 295 n n 
C5 C6 R4J doub 296 n y 
C5 C13 R4J sing 297 n y 
C6 C7 R4J sing 298 n y 
C13 S12 R4J sing 299 n y 
C13 C9 R4J doub 300 n y 
S12 C11 R4J sing 301 n y 
C7 N8 R4J doub 302 n y 
C9 N8 R4J sing 303 n y 
C9 C10 R4J sing 304 n y 
C11 C10 R4J doub 305 n y 
C11 C14 R4J sing 306 n n 
O15 C14 R4J sing 307 n n 
C16 C14 R4J sing 308 n n 
C16 O17 R4J sing 309 n n 
C14 C18 R4J sing 310 n n 
C18 CL19 R4J sing 311 n n 
C3 H1 R4J sing 312 n n 
C6 H2 R4J sing 313 n n 
C7 H3 R4J sing 314 n n 
C16 H4 R4J sing 315 n n 
C16 H5 R4J sing 316 n n 
C18 H6 R4J sing 317 n n 
C18 H7 R4J sing 318 n n 
C24 H8 R4J sing 319 n n 
C24 H9 R4J sing 320 n n 
C30 H10 R4J sing 321 n n 
C30 H11 R4J sing 322 n n 
C31 H12 R4J sing 323 n n 
C31 H13 R4J sing 324 n n 
C33 H14 R4J sing 325 n n 
C33 H15 R4J sing 326 n n 
C34 H16 R4J sing 327 n n 
C34 H17 R4J sing 328 n n 
C10 H18 R4J sing 329 n n 
O15 H19 R4J sing 330 n n 
O17 H20 R4J sing 331 n n 
C22 H21 R4J sing 332 n n 
C26 H22 R4J sing 333 n n 
N32 H23 R4J sing 334 n n 
#
_atom_sites.entry_id                     6VN6 
_atom_sites.fract_transf_matrix[1][1]    0.014225 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001004 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015225 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011751 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 R4J A 1 601 1 R4J INX . 
D 3 ZN A 1 602 2 ZN ZN . 
E 2 R4J B 1 601 2 R4J INX . 
F 3 ZN B 1 602 1 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 R4J . . . C 2 26.654 -2.079 27.441 1 74.71 ? C2 R4J 601 A 1 
HETATM 2 C C3 R4J . . . C 2 26.403 -1.253 28.525 1 72.51 ? C3 R4J 601 A 1 
HETATM 3 C C4 R4J . . . C 2 26.004 0.08 28.344 1 76.81 ? C4 R4J 601 A 1 
HETATM 4 C C5 R4J . . . C 2 25.756 0.957 29.516 1 76.68 ? C5 R4J 601 A 1 
HETATM 5 C C6 R4J . . . C 2 24.552 1.67 29.661 1 79.09 ? C6 R4J 601 A 1 
HETATM 6 C C7 R4J . . . C 2 24.379 2.486 30.783 1 76.7 ? C7 R4J 601 A 1 
HETATM 7 C C11 R4J . . . C 2 28.659 1.222 32.213 1 76.42 ? C11 R4J 601 A 1 
HETATM 8 C C16 R4J . . . C 2 30.769 2.367 32.877 1 68.26 ? C16 R4J 601 A 1 
HETATM 9 C C18 R4J . . . C 2 29.637 0.683 34.454 1 73.72 ? C18 R4J 601 A 1 
HETATM 10 C C24 R4J . . . C 2 25.847 0.552 24.689 1 89.61 ? C24 R4J 601 A 1 
HETATM 11 C C27 R4J . . . C 2 26.966 2.917 25.093 1 94.07 ? C27 R4J 601 A 1 
HETATM 12 O O28 R4J . . . C 2 27.949 2.493 24.513 1 104.76 ? O28 R4J 601 A 1 
HETATM 13 C C30 R4J . . . C 2 28.137 5.118 25.543 1 106.31 ? C30 R4J 601 A 1 
HETATM 14 C C31 R4J . . . C 2 28.633 5.413 26.976 1 107.84 ? C31 R4J 601 A 1 
HETATM 15 C C33 R4J . . . C 2 26.278 4.937 27.817 1 96.33 ? C33 R4J 601 A 1 
HETATM 16 C C34 R4J . . . C 2 25.834 4.82 26.349 1 88.28 ? C34 R4J 601 A 1 
HETATM 17 CL CL1 R4J . . . C 2 27.155 -3.712 27.74 1 78.81 ? CL1 R4J 601 A 1 
HETATM 18 N N8 R4J . . . C 2 25.316 2.607 31.709 1 76.96 ? N8 R4J 601 A 1 
HETATM 19 C C9 R4J . . . C 2 26.502 1.948 31.627 1 81.86 ? C9 R4J 601 A 1 
HETATM 20 C C10 R4J . . . C 2 27.623 1.971 32.544 1 79.4 ? C10 R4J 601 A 1 
HETATM 21 S S12 R4J . . . C 2 28.346 0.405 30.7 1 83.94 ? S12 R4J 601 A 1 
HETATM 22 C C13 R4J . . . C 2 26.749 1.108 30.527 1 77.36 ? C13 R4J 601 A 1 
HETATM 23 C C14 R4J . . . C 2 29.945 1.077 32.999 1 70.56 ? C14 R4J 601 A 1 
HETATM 24 O O15 R4J . . . C 2 30.71 0.015 32.433 1 68.31 ? O15 R4J 601 A 1 
HETATM 25 O O17 R4J . . . C 2 30.215 3.425 33.663 1 70.52 ? O17 R4J 601 A 1 
HETATM 26 CL CL19 R4J . . . C 2 31.117 0.566 35.474 1 76.73 ? CL19 R4J 601 A 1 
HETATM 27 C C20 R4J . . . C 2 25.848 0.581 27.028 1 84.52 ? C20 R4J 601 A 1 
HETATM 28 O O21 R4J . . . C 2 25.465 1.81 26.611 1 93.3 ? O21 R4J 601 A 1 
HETATM 29 C C22 R4J . . . C 2 25.745 2.018 25.212 1 90.07 ? C22 R4J 601 A 1 
HETATM 30 C C25 R4J . . . C 2 26.095 -0.264 25.943 1 84.37 ? C25 R4J 601 A 1 
HETATM 31 C C26 R4J . . . C 2 26.497 -1.583 26.142 1 80.52 ? C26 R4J 601 A 1 
HETATM 32 N N29 R4J . . . C 2 26.968 4.193 25.618 1 93.59 ? N29 R4J 601 A 1 
HETATM 33 N N32 R4J . . . C 2 27.512 5.747 27.884 1 103.58 ? N32 R4J 601 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#