data_6VNG # _model_server_result.job_id zhSaB9vAyPAPJMAtF651aQ _model_server_result.datetime_utc '2024-11-14 04:04:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vng # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1201}' # _entry.id 6VNG # _exptl.entry_id 6VNG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 544.66 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{2-fluoro-5-[(2-{[3-fluoro-4-(1-methylpiperidin-4-yl)phenyl]amino}-5-methylpyrimidin-4-yl)amino]phenyl}-2-methylpropane-2-sulfonamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VNG _cell.length_a 112.394 _cell.length_b 112.394 _cell.length_c 70.562 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VNG _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 182 B GLU 1006 1_555 A N PTR 183 B PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C PTR 183 B PTR 1007 1_555 A N TYR 184 B TYR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 B C GLU 182 A GLU 1006 1_555 B N PTR 183 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 B C PTR 183 A PTR 1007 1_555 B N TYR 184 A TYR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? # _chem_comp.formula 'C27 H34 F2 N6 O2 S' _chem_comp.formula_weight 544.66 _chem_comp.id R6M _chem_comp.mon_nstd_flag . _chem_comp.name N-{2-fluoro-5-[(2-{[3-fluoro-4-(1-methylpiperidin-4-yl)phenyl]amino}-5-methylpyrimidin-4-yl)amino]phenyl}-2-methylpropane-2-sulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C14 R6M sing 306 n n O18 S12 R6M doub 307 n n O13 S12 R6M doub 308 n n C16 C14 R6M sing 309 n n C14 S12 R6M sing 310 n n C14 C17 R6M sing 311 n n S12 N11 R6M sing 312 n n C01 C02 R6M sing 313 n n N11 C10 R6M sing 314 n n C19 C10 R6M doub 315 n y C19 C05 R6M sing 316 n y C10 C08 R6M sing 317 n y N04 C05 R6M sing 318 n n N04 C03 R6M sing 319 n n C02 C03 R6M doub 320 n y C02 C38 R6M sing 321 n y C05 C06 R6M doub 322 n y C03 N20 R6M sing 323 n y C38 N37 R6M doub 324 n y C08 F09 R6M sing 325 n n C08 C07 R6M doub 326 n y C06 C07 R6M sing 327 n y N20 C21 R6M doub 328 n y N37 C21 R6M sing 329 n y C21 N22 R6M sing 330 n n N22 C23 R6M sing 331 n n C36 C23 R6M doub 332 n y C36 C34 R6M sing 333 n y F35 C34 R6M sing 334 n n C23 C24 R6M sing 335 n y C34 C26 R6M doub 336 n y C24 C25 R6M doub 337 n y C26 C25 R6M sing 338 n y C26 C27 R6M sing 339 n n C27 C33 R6M sing 340 n n C27 C28 R6M sing 341 n n C33 C32 R6M sing 342 n n C28 C29 R6M sing 343 n n C32 N30 R6M sing 344 n n N30 C29 R6M sing 345 n n N30 C31 R6M sing 346 n n C15 H1 R6M sing 347 n n C15 H2 R6M sing 348 n n C15 H3 R6M sing 349 n n C17 H4 R6M sing 350 n n C17 H5 R6M sing 351 n n C17 H6 R6M sing 352 n n C24 H7 R6M sing 353 n n C28 H8 R6M sing 354 n n C28 H9 R6M sing 355 n n C01 H10 R6M sing 356 n n C01 H11 R6M sing 357 n n C01 H12 R6M sing 358 n n C06 H13 R6M sing 359 n n C07 H14 R6M sing 360 n n C16 H15 R6M sing 361 n n C16 H16 R6M sing 362 n n C16 H17 R6M sing 363 n n C19 H18 R6M sing 364 n n C25 H19 R6M sing 365 n n C27 H20 R6M sing 366 n n C29 H21 R6M sing 367 n n C29 H22 R6M sing 368 n n C31 H23 R6M sing 369 n n C31 H24 R6M sing 370 n n C31 H25 R6M sing 371 n n C32 H26 R6M sing 372 n n C32 H27 R6M sing 373 n n C33 H28 R6M sing 374 n n C33 H29 R6M sing 375 n n C36 H30 R6M sing 376 n n C38 H31 R6M sing 377 n n N04 H32 R6M sing 378 n n N11 H33 R6M sing 379 n n N22 H34 R6M sing 380 n n # _atom_sites.entry_id 6VNG _atom_sites.fract_transf_matrix[1][1] 0.008897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014172 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 R6M B 1 1201 2 R6M LIG . D 2 R6M A 1 1201 3 R6M LIG . E 3 HOH B 1 1301 29 HOH HOH . E 3 HOH B 2 1302 75 HOH HOH . E 3 HOH B 3 1303 35 HOH HOH . E 3 HOH B 4 1304 8 HOH HOH . E 3 HOH B 5 1305 15 HOH HOH . E 3 HOH B 6 1306 9 HOH HOH . E 3 HOH B 7 1307 24 HOH HOH . E 3 HOH B 8 1308 70 HOH HOH . E 3 HOH B 9 1309 1 HOH HOH . E 3 HOH B 10 1310 46 HOH HOH . E 3 HOH B 11 1311 23 HOH HOH . E 3 HOH B 12 1312 43 HOH HOH . E 3 HOH B 13 1313 32 HOH HOH . E 3 HOH B 14 1314 27 HOH HOH . E 3 HOH B 15 1315 21 HOH HOH . E 3 HOH B 16 1316 39 HOH HOH . E 3 HOH B 17 1317 18 HOH HOH . E 3 HOH B 18 1318 55 HOH HOH . E 3 HOH B 19 1319 16 HOH HOH . E 3 HOH B 20 1320 63 HOH HOH . E 3 HOH B 21 1321 76 HOH HOH . E 3 HOH B 22 1322 7 HOH HOH . E 3 HOH B 23 1323 11 HOH HOH . E 3 HOH B 24 1324 52 HOH HOH . E 3 HOH B 25 1325 53 HOH HOH . E 3 HOH B 26 1326 36 HOH HOH . E 3 HOH B 27 1327 74 HOH HOH . E 3 HOH B 28 1328 5 HOH HOH . E 3 HOH B 29 1329 41 HOH HOH . E 3 HOH B 30 1330 45 HOH HOH . E 3 HOH B 31 1331 30 HOH HOH . E 3 HOH B 32 1332 64 HOH HOH . E 3 HOH B 33 1333 54 HOH HOH . E 3 HOH B 34 1334 10 HOH HOH . E 3 HOH B 35 1335 20 HOH HOH . E 3 HOH B 36 1336 77 HOH HOH . E 3 HOH B 37 1337 12 HOH HOH . E 3 HOH B 38 1338 66 HOH HOH . E 3 HOH B 39 1339 65 HOH HOH . E 3 HOH B 40 1340 49 HOH HOH . E 3 HOH B 41 1341 84 HOH HOH . E 3 HOH B 42 1342 60 HOH HOH . E 3 HOH B 43 1343 73 HOH HOH . F 3 HOH A 1 1301 42 HOH HOH . F 3 HOH A 2 1302 51 HOH HOH . F 3 HOH A 3 1303 50 HOH HOH . F 3 HOH A 4 1304 71 HOH HOH . F 3 HOH A 5 1305 37 HOH HOH . F 3 HOH A 6 1306 47 HOH HOH . F 3 HOH A 7 1307 58 HOH HOH . F 3 HOH A 8 1308 26 HOH HOH . F 3 HOH A 9 1309 3 HOH HOH . F 3 HOH A 10 1310 28 HOH HOH . F 3 HOH A 11 1311 56 HOH HOH . F 3 HOH A 12 1312 14 HOH HOH . F 3 HOH A 13 1313 57 HOH HOH . F 3 HOH A 14 1314 59 HOH HOH . F 3 HOH A 15 1315 82 HOH HOH . F 3 HOH A 16 1316 69 HOH HOH . F 3 HOH A 17 1317 6 HOH HOH . F 3 HOH A 18 1318 25 HOH HOH . F 3 HOH A 19 1319 4 HOH HOH . F 3 HOH A 20 1320 19 HOH HOH . F 3 HOH A 21 1321 22 HOH HOH . F 3 HOH A 22 1322 13 HOH HOH . F 3 HOH A 23 1323 40 HOH HOH . F 3 HOH A 24 1324 72 HOH HOH . F 3 HOH A 25 1325 68 HOH HOH . F 3 HOH A 26 1326 78 HOH HOH . F 3 HOH A 27 1327 38 HOH HOH . F 3 HOH A 28 1328 2 HOH HOH . F 3 HOH A 29 1329 17 HOH HOH . F 3 HOH A 30 1330 44 HOH HOH . F 3 HOH A 31 1331 80 HOH HOH . F 3 HOH A 32 1332 31 HOH HOH . F 3 HOH A 33 1333 62 HOH HOH . F 3 HOH A 34 1334 34 HOH HOH . F 3 HOH A 35 1335 83 HOH HOH . F 3 HOH A 36 1336 81 HOH HOH . F 3 HOH A 37 1337 67 HOH HOH . F 3 HOH A 38 1338 79 HOH HOH . F 3 HOH A 39 1339 33 HOH HOH . F 3 HOH A 40 1340 48 HOH HOH . F 3 HOH A 41 1341 85 HOH HOH . F 3 HOH A 42 1342 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 R6M . . . C 2 55.891 -8.561 27.407 1 52.1 ? C10 R6M 1201 B 1 HETATM 2 C C15 R6M . . . C 2 57.169 -5.571 23.654 1 62.12 ? C15 R6M 1201 B 1 HETATM 3 C C17 R6M . . . C 2 57.026 -5.513 26.134 1 58.21 ? C17 R6M 1201 B 1 HETATM 4 C C21 R6M . . . C 2 51.158 -11.681 30.197 1 44.24 ? C21 R6M 1201 B 1 HETATM 5 C C24 R6M . . . C 2 52.843 -12.463 33.56 1 50.14 ? C24 R6M 1201 B 1 HETATM 6 C C26 R6M . . . C 2 54.982 -11.435 33.924 1 53.15 ? C26 R6M 1201 B 1 HETATM 7 C C28 R6M . . . C 2 56.383 -12.041 35.998 1 63.4 ? C28 R6M 1201 B 1 HETATM 8 C C01 R6M . . . C 2 49.664 -10.29 26.516 1 42.38 ? C01 R6M 1201 B 1 HETATM 9 C C02 R6M . . . C 2 50.212 -10.786 27.849 1 46.89 ? C02 R6M 1201 B 1 HETATM 10 C C03 R6M . . . C 2 51.481 -10.416 28.277 1 46.22 ? C03 R6M 1201 B 1 HETATM 11 C C05 R6M . . . C 2 53.575 -9.024 27.856 1 49.12 ? C05 R6M 1201 B 1 HETATM 12 C C06 R6M . . . C 2 53.717 -8.499 29.13 1 49.99 ? C06 R6M 1201 B 1 HETATM 13 C C07 R6M . . . C 2 54.939 -8.012 29.549 1 52.45 ? C07 R6M 1201 B 1 HETATM 14 C C08 R6M . . . C 2 56.02 -8.045 28.684 1 55.67 ? C08 R6M 1201 B 1 HETATM 15 C C14 R6M . . . C 2 56.548 -6.234 24.884 1 58.05 ? C14 R6M 1201 B 1 HETATM 16 C C16 R6M . . . C 2 55.03 -6.154 24.789 1 54.05 ? C16 R6M 1201 B 1 HETATM 17 C C19 R6M . . . C 2 54.663 -9.057 26.986 1 49.57 ? C19 R6M 1201 B 1 HETATM 18 C C23 R6M . . . C 2 52.772 -11.92 32.282 1 47.95 ? C23 R6M 1201 B 1 HETATM 19 C C25 R6M . . . C 2 53.939 -12.228 34.381 1 50.53 ? C25 R6M 1201 B 1 HETATM 20 C C27 R6M . . . C 2 56.195 -11.193 34.842 1 59.75 ? C27 R6M 1201 B 1 HETATM 21 C C29 R6M . . . C 2 57.236 -11.385 37.083 1 67.13 ? C29 R6M 1201 B 1 HETATM 22 C C31 R6M . . . C 2 58.677 -9.781 37.379 1 70.02 ? C31 R6M 1201 B 1 HETATM 23 C C32 R6M . . . C 2 56.974 -9.233 36.132 1 63.39 ? C32 R6M 1201 B 1 HETATM 24 C C33 R6M . . . C 2 55.929 -9.813 35.179 1 61.09 ? C33 R6M 1201 B 1 HETATM 25 C C34 R6M . . . C 2 54.92 -10.894 32.643 1 52.93 ? C34 R6M 1201 B 1 HETATM 26 C C36 R6M . . . C 2 53.819 -11.133 31.82 1 48.8 ? C36 R6M 1201 B 1 HETATM 27 C C38 R6M . . . C 2 49.449 -11.629 28.644 1 47.53 ? C38 R6M 1201 B 1 HETATM 28 F F09 R6M . . . C 2 57.225 -7.563 29.095 1 62.22 ? F09 R6M 1201 B 1 HETATM 29 F F35 R6M . . . C 2 55.945 -10.118 32.181 1 59.07 ? F35 R6M 1201 B 1 HETATM 30 N N04 R6M . . . C 2 52.282 -9.535 27.432 1 46.53 ? N04 R6M 1201 B 1 HETATM 31 N N11 R6M . . . C 2 57.071 -8.575 26.55 1 54.99 ? N11 R6M 1201 B 1 HETATM 32 N N20 R6M . . . C 2 51.911 -10.885 29.448 1 45.55 ? N20 R6M 1201 B 1 HETATM 33 N N22 R6M . . . C 2 51.584 -12.229 31.486 1 45.57 ? N22 R6M 1201 B 1 HETATM 34 N N30 R6M . . . C 2 57.914 -10.234 36.557 1 71.23 ? N30 R6M 1201 B 1 HETATM 35 N N37 R6M . . . C 2 49.956 -12.041 29.791 1 42.77 ? N37 R6M 1201 B 1 HETATM 36 O O13 R6M . . . C 2 58.369 -8.168 24.311 1 57.31 ? O13 R6M 1201 B 1 HETATM 37 O O18 R6M . . . C 2 56.223 -8.808 24.087 1 60.49 ? O18 R6M 1201 B 1 HETATM 38 S S12 R6M . . . C 2 57.064 -7.978 24.948 1 61.24 ? S12 R6M 1201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #