data_6VNG
#
_model_server_result.job_id            SDxaC9j1807uzoVkaCvTNA 
_model_server_result.datetime_utc      '2024-11-22 09:43:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vng 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1201}' 
#
_entry.id    6VNG 
#
_exptl.entry_id    6VNG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              544.66 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-{2-fluoro-5-[(2-{[3-fluoro-4-(1-methylpiperidin-4-yl)phenyl]amino}-5-methylpyrimidin-4-yl)amino]phenyl}-2-methylpropane-2-sulfonamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VNG 
_cell.length_a            112.394 
_cell.length_b            112.394 
_cell.length_c            70.562 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VNG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 182 B GLU 1006 1_555 A N PTR 183 B PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C PTR 183 B PTR 1007 1_555 A N TYR 184 B TYR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale3 B C GLU 182 A GLU 1006 1_555 B N PTR 183 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale4 B C PTR 183 A PTR 1007 1_555 B N TYR 184 A TYR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
#
_chem_comp.formula           'C27 H34 F2 N6 O2 S' 
_chem_comp.formula_weight    544.66 
_chem_comp.id                R6M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-{2-fluoro-5-[(2-{[3-fluoro-4-(1-methylpiperidin-4-yl)phenyl]amino}-5-methylpyrimidin-4-yl)amino]phenyl}-2-methylpropane-2-sulfonamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 C14 R6M sing 306 n n 
O18 S12 R6M doub 307 n n 
O13 S12 R6M doub 308 n n 
C16 C14 R6M sing 309 n n 
C14 S12 R6M sing 310 n n 
C14 C17 R6M sing 311 n n 
S12 N11 R6M sing 312 n n 
C01 C02 R6M sing 313 n n 
N11 C10 R6M sing 314 n n 
C19 C10 R6M doub 315 n y 
C19 C05 R6M sing 316 n y 
C10 C08 R6M sing 317 n y 
N04 C05 R6M sing 318 n n 
N04 C03 R6M sing 319 n n 
C02 C03 R6M doub 320 n y 
C02 C38 R6M sing 321 n y 
C05 C06 R6M doub 322 n y 
C03 N20 R6M sing 323 n y 
C38 N37 R6M doub 324 n y 
C08 F09 R6M sing 325 n n 
C08 C07 R6M doub 326 n y 
C06 C07 R6M sing 327 n y 
N20 C21 R6M doub 328 n y 
N37 C21 R6M sing 329 n y 
C21 N22 R6M sing 330 n n 
N22 C23 R6M sing 331 n n 
C36 C23 R6M doub 332 n y 
C36 C34 R6M sing 333 n y 
F35 C34 R6M sing 334 n n 
C23 C24 R6M sing 335 n y 
C34 C26 R6M doub 336 n y 
C24 C25 R6M doub 337 n y 
C26 C25 R6M sing 338 n y 
C26 C27 R6M sing 339 n n 
C27 C33 R6M sing 340 n n 
C27 C28 R6M sing 341 n n 
C33 C32 R6M sing 342 n n 
C28 C29 R6M sing 343 n n 
C32 N30 R6M sing 344 n n 
N30 C29 R6M sing 345 n n 
N30 C31 R6M sing 346 n n 
C15 H1 R6M sing 347 n n 
C15 H2 R6M sing 348 n n 
C15 H3 R6M sing 349 n n 
C17 H4 R6M sing 350 n n 
C17 H5 R6M sing 351 n n 
C17 H6 R6M sing 352 n n 
C24 H7 R6M sing 353 n n 
C28 H8 R6M sing 354 n n 
C28 H9 R6M sing 355 n n 
C01 H10 R6M sing 356 n n 
C01 H11 R6M sing 357 n n 
C01 H12 R6M sing 358 n n 
C06 H13 R6M sing 359 n n 
C07 H14 R6M sing 360 n n 
C16 H15 R6M sing 361 n n 
C16 H16 R6M sing 362 n n 
C16 H17 R6M sing 363 n n 
C19 H18 R6M sing 364 n n 
C25 H19 R6M sing 365 n n 
C27 H20 R6M sing 366 n n 
C29 H21 R6M sing 367 n n 
C29 H22 R6M sing 368 n n 
C31 H23 R6M sing 369 n n 
C31 H24 R6M sing 370 n n 
C31 H25 R6M sing 371 n n 
C32 H26 R6M sing 372 n n 
C32 H27 R6M sing 373 n n 
C33 H28 R6M sing 374 n n 
C33 H29 R6M sing 375 n n 
C36 H30 R6M sing 376 n n 
C38 H31 R6M sing 377 n n 
N04 H32 R6M sing 378 n n 
N11 H33 R6M sing 379 n n 
N22 H34 R6M sing 380 n n 
#
_atom_sites.entry_id                     6VNG 
_atom_sites.fract_transf_matrix[1][1]    0.008897 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008897 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014172 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 R6M B 1 1201 2 R6M LIG . 
D 2 R6M A 1 1201 3 R6M LIG . 
E 3 HOH B 1 1301 29 HOH HOH . 
E 3 HOH B 2 1302 75 HOH HOH . 
E 3 HOH B 3 1303 35 HOH HOH . 
E 3 HOH B 4 1304 8 HOH HOH . 
E 3 HOH B 5 1305 15 HOH HOH . 
E 3 HOH B 6 1306 9 HOH HOH . 
E 3 HOH B 7 1307 24 HOH HOH . 
E 3 HOH B 8 1308 70 HOH HOH . 
E 3 HOH B 9 1309 1 HOH HOH . 
E 3 HOH B 10 1310 46 HOH HOH . 
E 3 HOH B 11 1311 23 HOH HOH . 
E 3 HOH B 12 1312 43 HOH HOH . 
E 3 HOH B 13 1313 32 HOH HOH . 
E 3 HOH B 14 1314 27 HOH HOH . 
E 3 HOH B 15 1315 21 HOH HOH . 
E 3 HOH B 16 1316 39 HOH HOH . 
E 3 HOH B 17 1317 18 HOH HOH . 
E 3 HOH B 18 1318 55 HOH HOH . 
E 3 HOH B 19 1319 16 HOH HOH . 
E 3 HOH B 20 1320 63 HOH HOH . 
E 3 HOH B 21 1321 76 HOH HOH . 
E 3 HOH B 22 1322 7 HOH HOH . 
E 3 HOH B 23 1323 11 HOH HOH . 
E 3 HOH B 24 1324 52 HOH HOH . 
E 3 HOH B 25 1325 53 HOH HOH . 
E 3 HOH B 26 1326 36 HOH HOH . 
E 3 HOH B 27 1327 74 HOH HOH . 
E 3 HOH B 28 1328 5 HOH HOH . 
E 3 HOH B 29 1329 41 HOH HOH . 
E 3 HOH B 30 1330 45 HOH HOH . 
E 3 HOH B 31 1331 30 HOH HOH . 
E 3 HOH B 32 1332 64 HOH HOH . 
E 3 HOH B 33 1333 54 HOH HOH . 
E 3 HOH B 34 1334 10 HOH HOH . 
E 3 HOH B 35 1335 20 HOH HOH . 
E 3 HOH B 36 1336 77 HOH HOH . 
E 3 HOH B 37 1337 12 HOH HOH . 
E 3 HOH B 38 1338 66 HOH HOH . 
E 3 HOH B 39 1339 65 HOH HOH . 
E 3 HOH B 40 1340 49 HOH HOH . 
E 3 HOH B 41 1341 84 HOH HOH . 
E 3 HOH B 42 1342 60 HOH HOH . 
E 3 HOH B 43 1343 73 HOH HOH . 
F 3 HOH A 1 1301 42 HOH HOH . 
F 3 HOH A 2 1302 51 HOH HOH . 
F 3 HOH A 3 1303 50 HOH HOH . 
F 3 HOH A 4 1304 71 HOH HOH . 
F 3 HOH A 5 1305 37 HOH HOH . 
F 3 HOH A 6 1306 47 HOH HOH . 
F 3 HOH A 7 1307 58 HOH HOH . 
F 3 HOH A 8 1308 26 HOH HOH . 
F 3 HOH A 9 1309 3 HOH HOH . 
F 3 HOH A 10 1310 28 HOH HOH . 
F 3 HOH A 11 1311 56 HOH HOH . 
F 3 HOH A 12 1312 14 HOH HOH . 
F 3 HOH A 13 1313 57 HOH HOH . 
F 3 HOH A 14 1314 59 HOH HOH . 
F 3 HOH A 15 1315 82 HOH HOH . 
F 3 HOH A 16 1316 69 HOH HOH . 
F 3 HOH A 17 1317 6 HOH HOH . 
F 3 HOH A 18 1318 25 HOH HOH . 
F 3 HOH A 19 1319 4 HOH HOH . 
F 3 HOH A 20 1320 19 HOH HOH . 
F 3 HOH A 21 1321 22 HOH HOH . 
F 3 HOH A 22 1322 13 HOH HOH . 
F 3 HOH A 23 1323 40 HOH HOH . 
F 3 HOH A 24 1324 72 HOH HOH . 
F 3 HOH A 25 1325 68 HOH HOH . 
F 3 HOH A 26 1326 78 HOH HOH . 
F 3 HOH A 27 1327 38 HOH HOH . 
F 3 HOH A 28 1328 2 HOH HOH . 
F 3 HOH A 29 1329 17 HOH HOH . 
F 3 HOH A 30 1330 44 HOH HOH . 
F 3 HOH A 31 1331 80 HOH HOH . 
F 3 HOH A 32 1332 31 HOH HOH . 
F 3 HOH A 33 1333 62 HOH HOH . 
F 3 HOH A 34 1334 34 HOH HOH . 
F 3 HOH A 35 1335 83 HOH HOH . 
F 3 HOH A 36 1336 81 HOH HOH . 
F 3 HOH A 37 1337 67 HOH HOH . 
F 3 HOH A 38 1338 79 HOH HOH . 
F 3 HOH A 39 1339 33 HOH HOH . 
F 3 HOH A 40 1340 48 HOH HOH . 
F 3 HOH A 41 1341 85 HOH HOH . 
F 3 HOH A 42 1342 61 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 R6M . . . C 2 55.891 -8.561 27.407 1 52.1 ? C10 R6M 1201 B 1 
HETATM 2 C C15 R6M . . . C 2 57.169 -5.571 23.654 1 62.12 ? C15 R6M 1201 B 1 
HETATM 3 C C17 R6M . . . C 2 57.026 -5.513 26.134 1 58.21 ? C17 R6M 1201 B 1 
HETATM 4 C C21 R6M . . . C 2 51.158 -11.681 30.197 1 44.24 ? C21 R6M 1201 B 1 
HETATM 5 C C24 R6M . . . C 2 52.843 -12.463 33.56 1 50.14 ? C24 R6M 1201 B 1 
HETATM 6 C C26 R6M . . . C 2 54.982 -11.435 33.924 1 53.15 ? C26 R6M 1201 B 1 
HETATM 7 C C28 R6M . . . C 2 56.383 -12.041 35.998 1 63.4 ? C28 R6M 1201 B 1 
HETATM 8 C C01 R6M . . . C 2 49.664 -10.29 26.516 1 42.38 ? C01 R6M 1201 B 1 
HETATM 9 C C02 R6M . . . C 2 50.212 -10.786 27.849 1 46.89 ? C02 R6M 1201 B 1 
HETATM 10 C C03 R6M . . . C 2 51.481 -10.416 28.277 1 46.22 ? C03 R6M 1201 B 1 
HETATM 11 C C05 R6M . . . C 2 53.575 -9.024 27.856 1 49.12 ? C05 R6M 1201 B 1 
HETATM 12 C C06 R6M . . . C 2 53.717 -8.499 29.13 1 49.99 ? C06 R6M 1201 B 1 
HETATM 13 C C07 R6M . . . C 2 54.939 -8.012 29.549 1 52.45 ? C07 R6M 1201 B 1 
HETATM 14 C C08 R6M . . . C 2 56.02 -8.045 28.684 1 55.67 ? C08 R6M 1201 B 1 
HETATM 15 C C14 R6M . . . C 2 56.548 -6.234 24.884 1 58.05 ? C14 R6M 1201 B 1 
HETATM 16 C C16 R6M . . . C 2 55.03 -6.154 24.789 1 54.05 ? C16 R6M 1201 B 1 
HETATM 17 C C19 R6M . . . C 2 54.663 -9.057 26.986 1 49.57 ? C19 R6M 1201 B 1 
HETATM 18 C C23 R6M . . . C 2 52.772 -11.92 32.282 1 47.95 ? C23 R6M 1201 B 1 
HETATM 19 C C25 R6M . . . C 2 53.939 -12.228 34.381 1 50.53 ? C25 R6M 1201 B 1 
HETATM 20 C C27 R6M . . . C 2 56.195 -11.193 34.842 1 59.75 ? C27 R6M 1201 B 1 
HETATM 21 C C29 R6M . . . C 2 57.236 -11.385 37.083 1 67.13 ? C29 R6M 1201 B 1 
HETATM 22 C C31 R6M . . . C 2 58.677 -9.781 37.379 1 70.02 ? C31 R6M 1201 B 1 
HETATM 23 C C32 R6M . . . C 2 56.974 -9.233 36.132 1 63.39 ? C32 R6M 1201 B 1 
HETATM 24 C C33 R6M . . . C 2 55.929 -9.813 35.179 1 61.09 ? C33 R6M 1201 B 1 
HETATM 25 C C34 R6M . . . C 2 54.92 -10.894 32.643 1 52.93 ? C34 R6M 1201 B 1 
HETATM 26 C C36 R6M . . . C 2 53.819 -11.133 31.82 1 48.8 ? C36 R6M 1201 B 1 
HETATM 27 C C38 R6M . . . C 2 49.449 -11.629 28.644 1 47.53 ? C38 R6M 1201 B 1 
HETATM 28 F F09 R6M . . . C 2 57.225 -7.563 29.095 1 62.22 ? F09 R6M 1201 B 1 
HETATM 29 F F35 R6M . . . C 2 55.945 -10.118 32.181 1 59.07 ? F35 R6M 1201 B 1 
HETATM 30 N N04 R6M . . . C 2 52.282 -9.535 27.432 1 46.53 ? N04 R6M 1201 B 1 
HETATM 31 N N11 R6M . . . C 2 57.071 -8.575 26.55 1 54.99 ? N11 R6M 1201 B 1 
HETATM 32 N N20 R6M . . . C 2 51.911 -10.885 29.448 1 45.55 ? N20 R6M 1201 B 1 
HETATM 33 N N22 R6M . . . C 2 51.584 -12.229 31.486 1 45.57 ? N22 R6M 1201 B 1 
HETATM 34 N N30 R6M . . . C 2 57.914 -10.234 36.557 1 71.23 ? N30 R6M 1201 B 1 
HETATM 35 N N37 R6M . . . C 2 49.956 -12.041 29.791 1 42.77 ? N37 R6M 1201 B 1 
HETATM 36 O O13 R6M . . . C 2 58.369 -8.168 24.311 1 57.31 ? O13 R6M 1201 B 1 
HETATM 37 O O18 R6M . . . C 2 56.223 -8.808 24.087 1 60.49 ? O18 R6M 1201 B 1 
HETATM 38 S S12 R6M . . . C 2 57.064 -7.978 24.948 1 61.24 ? S12 R6M 1201 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           446 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           38 
#