data_6VNX # _model_server_result.job_id TYY7iUVxo8CC7Fip_e1vTw _model_server_result.datetime_utc '2024-12-26 16:29:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 6VNX # _exptl.entry_id 6VNX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.393 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S)-2,2-difluoro-N-[(1S,5R,6R)-3-{5-fluoro-2-[(1-methyl-1H-pyrazol-4-yl)amino]pyrimidin-4-yl}-6-methyl-3-azabicyclo[3.1.0]hexan-1-yl]cyclopropane-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VNX _cell.length_a 36.406 _cell.length_b 73.559 _cell.length_c 103.825 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 189 A GLU 1053 1_555 A N PTR 190 A PTR 1054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 A C PTR 190 A PTR 1054 1_555 A N TYR 191 A TYR 1055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C18 H20 F3 N7 O' _chem_comp.formula_weight 407.393 _chem_comp.id R4V _chem_comp.mon_nstd_flag . _chem_comp.name (1S)-2,2-difluoro-N-[(1S,5R,6R)-3-{5-fluoro-2-[(1-methyl-1H-pyrazol-4-yl)amino]pyrimidin-4-yl}-6-methyl-3-azabicyclo[3.1.0]hexan-1-yl]cyclopropane-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F2 C18 R4V sing 306 n n C18 F3 R4V sing 307 n n C18 C16 R4V sing 308 n n C18 C17 R4V sing 309 n n C16 C17 R4V sing 310 n n C16 C15 R4V sing 311 n n F1 C8 R4V sing 312 n n N7 C15 R4V sing 313 n n N7 C4 R4V sing 314 n n C15 O1 R4V doub 315 n n C5 C4 R4V sing 316 n n C5 N1 R4V sing 317 n n C8 C9 R4V doub 318 n y C8 C7 R4V sing 319 n y C9 N2 R4V sing 320 n y C4 C2 R4V sing 321 n n C4 C3 R4V sing 322 n n N1 C7 R4V sing 323 n n N1 C6 R4V sing 324 n n C7 N3 R4V doub 325 n y N2 C10 R4V doub 326 n y C2 C3 R4V sing 327 n n C2 C1 R4V sing 328 n n C3 C6 R4V sing 329 n n N3 C10 R4V sing 330 n y C10 N4 R4V sing 331 n n N4 C11 R4V sing 332 n n C11 C13 R4V doub 333 n y C11 C12 R4V sing 334 n y C13 N6 R4V sing 335 n y C12 N5 R4V doub 336 n y N6 C14 R4V sing 337 n n N6 N5 R4V sing 338 n y C6 H9 R4V sing 339 n n C6 H10 R4V sing 340 n n C9 H11 R4V sing 341 n n C13 H14 R4V sing 342 n n C16 H3 R4V sing 343 n n C1 H5 R4V sing 344 n n C1 H6 R4V sing 345 n n C1 H4 R4V sing 346 n n C2 H1 R4V sing 347 n n C3 H2 R4V sing 348 n n C5 H8 R4V sing 349 n n C5 H7 R4V sing 350 n n N4 H12 R4V sing 351 n n C12 H13 R4V sing 352 n n C14 H16 R4V sing 353 n n C14 H15 R4V sing 354 n n C14 H17 R4V sing 355 n n N7 H18 R4V sing 356 n n C17 H19 R4V sing 357 n n C17 H20 R4V sing 358 n n # _atom_sites.entry_id 6VNX _atom_sites.fract_transf_matrix[1][1] 0.027468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009632 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 R4V A 1 4000 4000 R4V PFE . C 3 HOH A 1 4101 13 HOH HOH . C 3 HOH A 2 4102 37 HOH HOH . C 3 HOH A 3 4103 7 HOH HOH . C 3 HOH A 4 4104 113 HOH HOH . C 3 HOH A 5 4105 107 HOH HOH . C 3 HOH A 6 4106 116 HOH HOH . C 3 HOH A 7 4107 114 HOH HOH . C 3 HOH A 8 4108 89 HOH HOH . C 3 HOH A 9 4109 2 HOH HOH . C 3 HOH A 10 4110 90 HOH HOH . C 3 HOH A 11 4111 63 HOH HOH . C 3 HOH A 12 4112 73 HOH HOH . C 3 HOH A 13 4113 47 HOH HOH . C 3 HOH A 14 4114 3 HOH HOH . C 3 HOH A 15 4115 20 HOH HOH . C 3 HOH A 16 4116 58 HOH HOH . C 3 HOH A 17 4117 59 HOH HOH . C 3 HOH A 18 4118 5 HOH HOH . C 3 HOH A 19 4119 96 HOH HOH . C 3 HOH A 20 4120 122 HOH HOH . C 3 HOH A 21 4121 87 HOH HOH . C 3 HOH A 22 4122 15 HOH HOH . C 3 HOH A 23 4123 99 HOH HOH . C 3 HOH A 24 4124 33 HOH HOH . C 3 HOH A 25 4125 69 HOH HOH . C 3 HOH A 26 4126 91 HOH HOH . C 3 HOH A 27 4127 108 HOH HOH . C 3 HOH A 28 4128 70 HOH HOH . C 3 HOH A 29 4129 40 HOH HOH . C 3 HOH A 30 4130 14 HOH HOH . C 3 HOH A 31 4131 67 HOH HOH . C 3 HOH A 32 4132 23 HOH HOH . C 3 HOH A 33 4133 120 HOH HOH . C 3 HOH A 34 4134 8 HOH HOH . C 3 HOH A 35 4135 71 HOH HOH . C 3 HOH A 36 4136 56 HOH HOH . C 3 HOH A 37 4137 51 HOH HOH . C 3 HOH A 38 4138 72 HOH HOH . C 3 HOH A 39 4139 25 HOH HOH . C 3 HOH A 40 4140 1 HOH HOH . C 3 HOH A 41 4141 45 HOH HOH . C 3 HOH A 42 4142 21 HOH HOH . C 3 HOH A 43 4143 6 HOH HOH . C 3 HOH A 44 4144 98 HOH HOH . C 3 HOH A 45 4145 112 HOH HOH . C 3 HOH A 46 4146 35 HOH HOH . C 3 HOH A 47 4147 94 HOH HOH . C 3 HOH A 48 4148 12 HOH HOH . C 3 HOH A 49 4149 9 HOH HOH . C 3 HOH A 50 4150 27 HOH HOH . C 3 HOH A 51 4151 106 HOH HOH . C 3 HOH A 52 4152 17 HOH HOH . C 3 HOH A 53 4153 121 HOH HOH . C 3 HOH A 54 4154 49 HOH HOH . C 3 HOH A 55 4155 24 HOH HOH . C 3 HOH A 56 4156 28 HOH HOH . C 3 HOH A 57 4157 76 HOH HOH . C 3 HOH A 58 4158 78 HOH HOH . C 3 HOH A 59 4159 64 HOH HOH . C 3 HOH A 60 4160 104 HOH HOH . C 3 HOH A 61 4161 111 HOH HOH . C 3 HOH A 62 4162 83 HOH HOH . C 3 HOH A 63 4163 101 HOH HOH . C 3 HOH A 64 4164 10 HOH HOH . C 3 HOH A 65 4165 100 HOH HOH . C 3 HOH A 66 4166 19 HOH HOH . C 3 HOH A 67 4167 22 HOH HOH . C 3 HOH A 68 4168 75 HOH HOH . C 3 HOH A 69 4169 11 HOH HOH . C 3 HOH A 70 4170 109 HOH HOH . C 3 HOH A 71 4171 88 HOH HOH . C 3 HOH A 72 4172 36 HOH HOH . C 3 HOH A 73 4173 16 HOH HOH . C 3 HOH A 74 4174 57 HOH HOH . C 3 HOH A 75 4175 105 HOH HOH . C 3 HOH A 76 4176 68 HOH HOH . C 3 HOH A 77 4177 79 HOH HOH . C 3 HOH A 78 4178 81 HOH HOH . C 3 HOH A 79 4179 50 HOH HOH . C 3 HOH A 80 4180 26 HOH HOH . C 3 HOH A 81 4181 31 HOH HOH . C 3 HOH A 82 4182 125 HOH HOH . C 3 HOH A 83 4183 66 HOH HOH . C 3 HOH A 84 4184 41 HOH HOH . C 3 HOH A 85 4185 32 HOH HOH . C 3 HOH A 86 4186 61 HOH HOH . C 3 HOH A 87 4187 34 HOH HOH . C 3 HOH A 88 4188 85 HOH HOH . C 3 HOH A 89 4189 44 HOH HOH . C 3 HOH A 90 4190 124 HOH HOH . C 3 HOH A 91 4191 65 HOH HOH . C 3 HOH A 92 4192 29 HOH HOH . C 3 HOH A 93 4193 52 HOH HOH . C 3 HOH A 94 4194 60 HOH HOH . C 3 HOH A 95 4195 84 HOH HOH . C 3 HOH A 96 4196 30 HOH HOH . C 3 HOH A 97 4197 42 HOH HOH . C 3 HOH A 98 4198 102 HOH HOH . C 3 HOH A 99 4199 43 HOH HOH . C 3 HOH A 100 4200 55 HOH HOH . C 3 HOH A 101 4201 62 HOH HOH . C 3 HOH A 102 4202 92 HOH HOH . C 3 HOH A 103 4203 4 HOH HOH . C 3 HOH A 104 4204 39 HOH HOH . C 3 HOH A 105 4205 77 HOH HOH . C 3 HOH A 106 4206 74 HOH HOH . C 3 HOH A 107 4207 115 HOH HOH . C 3 HOH A 108 4208 110 HOH HOH . C 3 HOH A 109 4209 123 HOH HOH . C 3 HOH A 110 4210 95 HOH HOH . C 3 HOH A 111 4211 53 HOH HOH . C 3 HOH A 112 4212 38 HOH HOH . C 3 HOH A 113 4213 97 HOH HOH . C 3 HOH A 114 4214 119 HOH HOH . C 3 HOH A 115 4215 46 HOH HOH . C 3 HOH A 116 4216 54 HOH HOH . C 3 HOH A 117 4217 80 HOH HOH . C 3 HOH A 118 4218 93 HOH HOH . C 3 HOH A 119 4219 103 HOH HOH . C 3 HOH A 120 4220 118 HOH HOH . C 3 HOH A 121 4221 86 HOH HOH . C 3 HOH A 122 4222 48 HOH HOH . C 3 HOH A 123 4223 82 HOH HOH . C 3 HOH A 124 4224 117 HOH HOH . C 3 HOH A 125 4225 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 R4V . . . B 2 8.487 -9.987 16.297 1 26.35 ? N3 R4V 4000 A 1 HETATM 2 C C4 R4V . . . B 2 6.971 -6.047 14.396 1 23.07 ? C4 R4V 4000 A 1 HETATM 3 N N2 R4V . . . B 2 10.32 -11.447 15.494 1 26.05 ? N2 R4V 4000 A 1 HETATM 4 C C7 R4V . . . B 2 8.521 -9.321 15.089 1 25.59 ? C7 R4V 4000 A 1 HETATM 5 C C6 R4V . . . B 2 7.015 -7.693 16.218 1 24.92 ? C6 R4V 4000 A 1 HETATM 6 C C9 R4V . . . B 2 10.25 -10.825 14.306 1 24.48 ? C9 R4V 4000 A 1 HETATM 7 C C13 R4V . . . B 2 7.332 -10.798 18.739 1 26.9 ? C13 R4V 4000 A 1 HETATM 8 C C8 R4V . . . B 2 9.359 -9.776 14.031 1 24.18 ? C8 R4V 4000 A 1 HETATM 9 N N5 R4V . . . B 2 7.259 -12.331 20.452 1 25.95 ? N5 R4V 4000 A 1 HETATM 10 C C18 R4V . . . B 2 2.643 -5.037 12.026 1 24.02 ? C18 R4V 4000 A 1 HETATM 11 C C16 R4V . . . B 2 3.977 -4.591 12.626 1 23.53 ? C16 R4V 4000 A 1 HETATM 12 C C1 R4V . . . B 2 9.042 -5.371 15.861 1 26.2 ? C1 R4V 4000 A 1 HETATM 13 C C2 R4V . . . B 2 7.593 -5.232 15.526 1 22.98 ? C2 R4V 4000 A 1 HETATM 14 C C3 R4V . . . B 2 6.559 -6.3 15.843 1 25.21 ? C3 R4V 4000 A 1 HETATM 15 C C5 R4V . . . B 2 7.741 -7.256 13.88 1 22.12 ? C5 R4V 4000 A 1 HETATM 16 N N1 R4V . . . B 2 7.71 -8.213 15.01 1 25.58 ? N1 R4V 4000 A 1 HETATM 17 C C10 R4V . . . B 2 9.392 -11.01 16.442 1 27.35 ? C10 R4V 4000 A 1 HETATM 18 N N4 R4V . . . B 2 9.469 -11.66 17.665 1 27.06 ? N4 R4V 4000 A 1 HETATM 19 C C11 R4V . . . B 2 8.445 -11.632 18.617 1 29.91 ? C11 R4V 4000 A 1 HETATM 20 C C12 R4V . . . B 2 8.37 -12.568 19.709 1 27.75 ? C12 R4V 4000 A 1 HETATM 21 N N6 R4V . . . B 2 6.647 -11.265 19.866 1 27.72 ? N6 R4V 4000 A 1 HETATM 22 C C14 R4V . . . B 2 5.359 -10.751 20.344 1 28.65 ? C14 R4V 4000 A 1 HETATM 23 F F1 R4V . . . B 2 9.33 -9.25 12.813 1 19.7 ? F1 R4V 4000 A 1 HETATM 24 N N7 R4V . . . B 2 6.109 -5.412 13.452 1 23.17 ? N7 R4V 4000 A 1 HETATM 25 C C15 R4V . . . B 2 4.728 -5.557 13.487 1 25.2 ? C15 R4V 4000 A 1 HETATM 26 O O1 R4V . . . B 2 4.165 -6.392 14.185 1 24.59 ? O1 R4V 4000 A 1 HETATM 27 C C17 R4V . . . B 2 2.652 -4.062 13.185 1 23.14 ? C17 R4V 4000 A 1 HETATM 28 F F2 R4V . . . B 2 2.338 -4.667 10.784 1 26.61 ? F2 R4V 4000 A 1 HETATM 29 F F3 R4V . . . B 2 2.18 -6.275 12.157 1 28.53 ? F3 R4V 4000 A 1 HETATM 30 H H9 R4V . . . B 2 7.672 -7.684 17.119 0 24.92 ? H9 R4V 4000 A 1 HETATM 31 H H10 R4V . . . B 2 6.152 -8.352 16.467 0 24.92 ? H10 R4V 4000 A 1 HETATM 32 H H11 R4V . . . B 2 10.954 -11.188 13.545 0 24.48 ? H11 R4V 4000 A 1 HETATM 33 H H14 R4V . . . B 2 6.987 -9.954 18.149 0 27.04 ? H14 R4V 4000 A 1 HETATM 34 H H3 R4V . . . B 2 4.584 -3.894 12.023 0 23.39 ? H3 R4V 4000 A 1 HETATM 35 H H5 R4V . . . B 2 9.669 -4.823 15.141 0 26.19 ? H5 R4V 4000 A 1 HETATM 36 H H6 R4V . . . B 2 9.41 -6.404 15.875 0 26.19 ? H6 R4V 4000 A 1 HETATM 37 H H4 R4V . . . B 2 9.26 -4.956 16.857 0 26.19 ? H4 R4V 4000 A 1 HETATM 38 H H1 R4V . . . B 2 7.249 -4.184 15.635 0 23.02 ? H1 R4V 4000 A 1 HETATM 39 H H2 R4V . . . B 2 5.588 -6 16.26 0 25.24 ? H2 R4V 4000 A 1 HETATM 40 H H8 R4V . . . B 2 8.777 -6.969 13.585 0 22.12 ? H8 R4V 4000 A 1 HETATM 41 H H7 R4V . . . B 2 7.268 -7.708 12.978 0 22.12 ? H7 R4V 4000 A 1 HETATM 42 H H12 R4V . . . B 2 10.168 -12.391 17.772 0 27.13 ? H12 R4V 4000 A 1 HETATM 43 H H13 R4V . . . B 2 9.064 -13.366 19.956 0 27.75 ? H13 R4V 4000 A 1 HETATM 44 H H16 R4V . . . B 2 5.4 -9.655 20.463 0 28.63 ? H16 R4V 4000 A 1 HETATM 45 H H15 R4V . . . B 2 5.086 -11.188 21.321 0 28.63 ? H15 R4V 4000 A 1 HETATM 46 H H17 R4V . . . B 2 4.552 -10.992 19.63 0 28.63 ? H17 R4V 4000 A 1 HETATM 47 H H18 R4V . . . B 2 6.559 -4.788 12.796 0 23.1 ? H18 R4V 4000 A 1 HETATM 48 H H19 R4V . . . B 2 2.31 -4.395 14.173 0 23.05 ? H19 R4V 4000 A 1 HETATM 49 H H20 R4V . . . B 2 2.385 -3.012 13.032 0 23.05 ? H20 R4V 4000 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 49 #