data_6VNY # _model_server_result.job_id MXzP4j2lg97JteY_d6yKPQ _model_server_result.datetime_utc '2024-11-05 12:37:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vny # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 6VNY # _exptl.entry_id 6VNY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 387.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1S,5R)-3-(5-fluoro-2-{[1-(2-hydroxyethyl)-1H-pyrazol-4-yl]amino}pyrimidin-4-yl)-3-azabicyclo[3.1.0]hexan-1-yl]cyclopropanecarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VNY _cell.length_a 36.344 _cell.length_b 73.106 _cell.length_c 101.994 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VNY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 189 A GLU 1053 1_555 A N PTR 190 A PTR 1054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C PTR 190 A PTR 1054 1_555 A N TYR 191 A TYR 1055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C18 H22 F N7 O2' _chem_comp.formula_weight 387.411 _chem_comp.id R4S _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1S,5R)-3-(5-fluoro-2-{[1-(2-hydroxyethyl)-1H-pyrazol-4-yl]amino}pyrimidin-4-yl)-3-azabicyclo[3.1.0]hexan-1-yl]cyclopropanecarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 R4S sing 306 n n C17 C18 R4S sing 307 n n C16 C18 R4S sing 308 n n C16 C15 R4S sing 309 n n F1 C3 R4S sing 310 n n N7 C15 R4S sing 311 n n N7 C12 R4S sing 312 n n C15 O2 R4S doub 313 n n C11 C12 R4S sing 314 n n C11 N6 R4S sing 315 n n C3 C4 R4S doub 316 n y C3 C2 R4S sing 317 n y C12 C14 R4S sing 318 n n C12 C13 R4S sing 319 n n C4 N2 R4S sing 320 n y N6 C2 R4S sing 321 n n N6 C10 R4S sing 322 n n C2 N1 R4S doub 323 n y C14 C13 R4S sing 324 n n N2 C1 R4S doub 325 n y C13 C10 R4S sing 326 n n N1 C1 R4S sing 327 n y C1 N5 R4S sing 328 n n N5 C5 R4S sing 329 n n C5 C7 R4S doub 330 n y C5 C6 R4S sing 331 n y C7 N4 R4S sing 332 n y C6 N3 R4S doub 333 n y N4 N3 R4S sing 334 n y N4 C8 R4S sing 335 n n C8 C9 R4S sing 336 n n O1 C9 R4S sing 337 n n C4 H1 R4S sing 338 n n C7 H2 R4S sing 339 n n C6 H3 R4S sing 340 n n C9 H4 R4S sing 341 n n C9 H5 R4S sing 342 n n C13 H6 R4S sing 343 n n C8 H7 R4S sing 344 n n C8 H8 R4S sing 345 n n N5 H9 R4S sing 346 n n C18 H10 R4S sing 347 n n C18 H11 R4S sing 348 n n C16 H12 R4S sing 349 n n O1 H13 R4S sing 350 n n C10 H14 R4S sing 351 n n C10 H15 R4S sing 352 n n C11 H16 R4S sing 353 n n C11 H17 R4S sing 354 n n C14 H18 R4S sing 355 n n C14 H19 R4S sing 356 n n N7 H20 R4S sing 357 n n C17 H21 R4S sing 358 n n C17 H22 R4S sing 359 n n # _atom_sites.entry_id 6VNY _atom_sites.fract_transf_matrix[1][1] 0.027515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009804 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 R4S A 1 4000 4000 R4S PFE . C 3 HOH A 1 4101 126 HOH HOH . C 3 HOH A 2 4102 152 HOH HOH . C 3 HOH A 3 4103 13 HOH HOH . C 3 HOH A 4 4104 151 HOH HOH . C 3 HOH A 5 4105 133 HOH HOH . C 3 HOH A 6 4106 91 HOH HOH . C 3 HOH A 7 4107 128 HOH HOH . C 3 HOH A 8 4108 56 HOH HOH . C 3 HOH A 9 4109 14 HOH HOH . C 3 HOH A 10 4110 137 HOH HOH . C 3 HOH A 11 4111 64 HOH HOH . C 3 HOH A 12 4112 125 HOH HOH . C 3 HOH A 13 4113 72 HOH HOH . C 3 HOH A 14 4114 146 HOH HOH . C 3 HOH A 15 4115 120 HOH HOH . C 3 HOH A 16 4116 134 HOH HOH . C 3 HOH A 17 4117 31 HOH HOH . C 3 HOH A 18 4118 21 HOH HOH . C 3 HOH A 19 4119 48 HOH HOH . C 3 HOH A 20 4120 41 HOH HOH . C 3 HOH A 21 4121 10 HOH HOH . C 3 HOH A 22 4122 92 HOH HOH . C 3 HOH A 23 4123 61 HOH HOH . C 3 HOH A 24 4124 77 HOH HOH . C 3 HOH A 25 4125 109 HOH HOH . C 3 HOH A 26 4126 138 HOH HOH . C 3 HOH A 27 4127 11 HOH HOH . C 3 HOH A 28 4128 53 HOH HOH . C 3 HOH A 29 4129 4 HOH HOH . C 3 HOH A 30 4130 62 HOH HOH . C 3 HOH A 31 4131 50 HOH HOH . C 3 HOH A 32 4132 106 HOH HOH . C 3 HOH A 33 4133 66 HOH HOH . C 3 HOH A 34 4134 153 HOH HOH . C 3 HOH A 35 4135 18 HOH HOH . C 3 HOH A 36 4136 69 HOH HOH . C 3 HOH A 37 4137 112 HOH HOH . C 3 HOH A 38 4138 130 HOH HOH . C 3 HOH A 39 4139 33 HOH HOH . C 3 HOH A 40 4140 24 HOH HOH . C 3 HOH A 41 4141 37 HOH HOH . C 3 HOH A 42 4142 5 HOH HOH . C 3 HOH A 43 4143 103 HOH HOH . C 3 HOH A 44 4144 115 HOH HOH . C 3 HOH A 45 4145 73 HOH HOH . C 3 HOH A 46 4146 60 HOH HOH . C 3 HOH A 47 4147 131 HOH HOH . C 3 HOH A 48 4148 28 HOH HOH . C 3 HOH A 49 4149 135 HOH HOH . C 3 HOH A 50 4150 63 HOH HOH . C 3 HOH A 51 4151 49 HOH HOH . C 3 HOH A 52 4152 16 HOH HOH . C 3 HOH A 53 4153 74 HOH HOH . C 3 HOH A 54 4154 141 HOH HOH . C 3 HOH A 55 4155 44 HOH HOH . C 3 HOH A 56 4156 97 HOH HOH . C 3 HOH A 57 4157 38 HOH HOH . C 3 HOH A 58 4158 12 HOH HOH . C 3 HOH A 59 4159 113 HOH HOH . C 3 HOH A 60 4160 22 HOH HOH . C 3 HOH A 61 4161 19 HOH HOH . C 3 HOH A 62 4162 86 HOH HOH . C 3 HOH A 63 4163 68 HOH HOH . C 3 HOH A 64 4164 129 HOH HOH . C 3 HOH A 65 4165 34 HOH HOH . C 3 HOH A 66 4166 82 HOH HOH . C 3 HOH A 67 4167 143 HOH HOH . C 3 HOH A 68 4168 148 HOH HOH . C 3 HOH A 69 4169 81 HOH HOH . C 3 HOH A 70 4170 25 HOH HOH . C 3 HOH A 71 4171 70 HOH HOH . C 3 HOH A 72 4172 83 HOH HOH . C 3 HOH A 73 4173 88 HOH HOH . C 3 HOH A 74 4174 139 HOH HOH . C 3 HOH A 75 4175 45 HOH HOH . C 3 HOH A 76 4176 93 HOH HOH . C 3 HOH A 77 4177 39 HOH HOH . C 3 HOH A 78 4178 142 HOH HOH . C 3 HOH A 79 4179 20 HOH HOH . C 3 HOH A 80 4180 58 HOH HOH . C 3 HOH A 81 4181 98 HOH HOH . C 3 HOH A 82 4182 85 HOH HOH . C 3 HOH A 83 4183 76 HOH HOH . C 3 HOH A 84 4184 55 HOH HOH . C 3 HOH A 85 4185 43 HOH HOH . C 3 HOH A 86 4186 30 HOH HOH . C 3 HOH A 87 4187 17 HOH HOH . C 3 HOH A 88 4188 136 HOH HOH . C 3 HOH A 89 4189 59 HOH HOH . C 3 HOH A 90 4190 101 HOH HOH . C 3 HOH A 91 4191 27 HOH HOH . C 3 HOH A 92 4192 52 HOH HOH . C 3 HOH A 93 4193 145 HOH HOH . C 3 HOH A 94 4194 26 HOH HOH . C 3 HOH A 95 4195 78 HOH HOH . C 3 HOH A 96 4196 123 HOH HOH . C 3 HOH A 97 4197 15 HOH HOH . C 3 HOH A 98 4198 87 HOH HOH . C 3 HOH A 99 4199 117 HOH HOH . C 3 HOH A 100 4200 118 HOH HOH . C 3 HOH A 101 4201 65 HOH HOH . C 3 HOH A 102 4202 80 HOH HOH . C 3 HOH A 103 4203 104 HOH HOH . C 3 HOH A 104 4204 42 HOH HOH . C 3 HOH A 105 4205 114 HOH HOH . C 3 HOH A 106 4206 89 HOH HOH . C 3 HOH A 107 4207 122 HOH HOH . C 3 HOH A 108 4208 36 HOH HOH . C 3 HOH A 109 4209 102 HOH HOH . C 3 HOH A 110 4210 132 HOH HOH . C 3 HOH A 111 4211 108 HOH HOH . C 3 HOH A 112 4212 110 HOH HOH . C 3 HOH A 113 4213 94 HOH HOH . C 3 HOH A 114 4214 35 HOH HOH . C 3 HOH A 115 4215 107 HOH HOH . C 3 HOH A 116 4216 95 HOH HOH . C 3 HOH A 117 4217 47 HOH HOH . C 3 HOH A 118 4218 119 HOH HOH . C 3 HOH A 119 4219 127 HOH HOH . C 3 HOH A 120 4220 79 HOH HOH . C 3 HOH A 121 4221 144 HOH HOH . C 3 HOH A 122 4222 99 HOH HOH . C 3 HOH A 123 4223 105 HOH HOH . C 3 HOH A 124 4224 147 HOH HOH . C 3 HOH A 125 4225 67 HOH HOH . C 3 HOH A 126 4226 29 HOH HOH . C 3 HOH A 127 4227 116 HOH HOH . C 3 HOH A 128 4228 111 HOH HOH . C 3 HOH A 129 4229 150 HOH HOH . C 3 HOH A 130 4230 121 HOH HOH . C 3 HOH A 131 4231 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 R4S . . . B 2 7.389 -12.182 20.229 1 25.07 ? N3 R4S 4000 A 1 HETATM 2 C C4 R4S . . . B 2 10.281 -10.84 13.988 1 28.67 ? C4 R4S 4000 A 1 HETATM 3 N N2 R4S . . . B 2 10.357 -11.391 15.206 1 28.62 ? N2 R4S 4000 A 1 HETATM 4 C C7 R4S . . . B 2 7.39 -10.795 18.482 1 29.46 ? C7 R4S 4000 A 1 HETATM 5 C C6 R4S . . . B 2 8.434 -12.52 19.495 1 26.7 ? C6 R4S 4000 A 1 HETATM 6 C C9 R4S . . . B 2 6.073 -9.578 21.366 1 27.87 ? C9 R4S 4000 A 1 HETATM 7 C C13 R4S . . . B 2 6.784 -6.117 15.425 1 27.37 ? C13 R4S 4000 A 1 HETATM 8 C C8 R4S . . . B 2 5.623 -10.49 20.247 1 28.09 ? C8 R4S 4000 A 1 HETATM 9 N N5 R4S . . . B 2 9.453 -11.667 17.276 1 30.23 ? N5 R4S 4000 A 1 HETATM 10 C C18 R4S . . . B 2 2.718 -4.058 12.716 1 22.29 ? C18 R4S 4000 A 1 HETATM 11 C C16 R4S . . . B 2 3.967 -4.68 12.139 1 24.29 ? C16 R4S 4000 A 1 HETATM 12 C C1 R4S . . . B 2 9.504 -10.908 16.12 1 30.23 ? C1 R4S 4000 A 1 HETATM 13 N N1 R4S . . . B 2 8.608 -9.913 15.951 1 28.16 ? N1 R4S 4000 A 1 HETATM 14 C C2 R4S . . . B 2 8.517 -9.314 14.751 1 28.28 ? C2 R4S 4000 A 1 HETATM 15 C C3 R4S . . . B 2 9.386 -9.797 13.666 1 28.8 ? C3 R4S 4000 A 1 HETATM 16 C C5 R4S . . . B 2 8.506 -11.675 18.33 1 30.45 ? C5 R4S 4000 A 1 HETATM 17 N N4 R4S . . . B 2 6.776 -11.136 19.627 1 26.81 ? N4 R4S 4000 A 1 HETATM 18 O O1 R4S . . . B 2 6.699 -8.445 20.826 1 29.55 ? O1 R4S 4000 A 1 HETATM 19 F F1 R4S . . . B 2 9.37 -9.307 12.402 1 29.73 ? F1 R4S 4000 A 1 HETATM 20 N N6 R4S . . . B 2 7.621 -8.24 14.643 1 26.55 ? N6 R4S 4000 A 1 HETATM 21 C C10 R4S . . . B 2 7.119 -7.542 15.826 1 27.32 ? C10 R4S 4000 A 1 HETATM 22 C C11 R4S . . . B 2 7.627 -7.308 13.442 1 25.11 ? C11 R4S 4000 A 1 HETATM 23 C C12 R4S . . . B 2 7.044 -6.01 13.929 1 25.28 ? C12 R4S 4000 A 1 HETATM 24 C C14 R4S . . . B 2 7.923 -5.252 14.917 1 25.65 ? C14 R4S 4000 A 1 HETATM 25 N N7 R4S . . . B 2 6.105 -5.328 13.041 1 25.36 ? N7 R4S 4000 A 1 HETATM 26 C C15 R4S . . . B 2 4.784 -5.579 13.046 1 28.14 ? C15 R4S 4000 A 1 HETATM 27 O O2 R4S . . . B 2 4.263 -6.469 13.726 1 30.94 ? O2 R4S 4000 A 1 HETATM 28 C C17 R4S . . . B 2 2.593 -5.158 11.735 1 23.12 ? C17 R4S 4000 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 28 #