data_6VOK # _model_server_result.job_id IqORVqQjWV3tpYET6EQPAA _model_server_result.datetime_utc '2024-10-20 00:52:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vok # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":600}' # _entry.id 6VOK # _exptl.entry_id 6VOK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VOK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VOK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N ? 6 L N N ? 6 O N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 6VOK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 6 ATP A 1 600 600 ATP ATP . K 6 ATP B 1 601 601 ATP ATP . L 6 ATP C 1 601 600 ATP ATP . M 7 TTX C 1 602 651 TTX TTX . N 8 ADP D 1 600 600 ADP ADP . O 6 ATP E 1 601 601 ATP ATP . P 8 ADP F 1 601 601 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . J 6 193.754 169.127 245.698 1 22.94 ? PG ATP 600 A 1 HETATM 2 O O1G ATP . . . J 6 194.349 170.193 246.579 1 22.94 ? O1G ATP 600 A 1 HETATM 3 O O2G ATP . . . J 6 194.199 167.727 246.038 1 22.94 ? O2G ATP 600 A 1 HETATM 4 O O3G ATP . . . J 6 192.282 169.284 245.414 1 22.94 ? O3G ATP 600 A 1 HETATM 5 P PB ATP . . . J 6 195.988 169.201 244.049 1 22.94 ? PB ATP 600 A 1 HETATM 6 O O1B ATP . . . J 6 196.735 170.177 244.914 1 22.94 ? O1B ATP 600 A 1 HETATM 7 O O2B ATP . . . J 6 196.292 167.74 244.139 1 22.94 ? O2B ATP 600 A 1 HETATM 8 O O3B ATP . . . J 6 194.42 169.423 244.275 1 22.94 ? O3B ATP 600 A 1 HETATM 9 P PA ATP . . . J 6 196.017 168.482 241.411 1 22.94 ? PA ATP 600 A 1 HETATM 10 O O1A ATP . . . J 6 197.329 167.75 241.394 1 22.94 ? O1A ATP 600 A 1 HETATM 11 O O2A ATP . . . J 6 194.74 167.746 241.694 1 22.94 ? O2A ATP 600 A 1 HETATM 12 O O3A ATP . . . J 6 196.149 169.628 242.517 1 22.94 ? O3A ATP 600 A 1 HETATM 13 O O5' ATP . . . J 6 195.844 169.276 240.032 1 22.94 ? O5' ATP 600 A 1 HETATM 14 C C5' ATP . . . J 6 194.801 170.232 239.876 1 22.94 ? C5' ATP 600 A 1 HETATM 15 C C4' ATP . . . J 6 194.638 170.585 238.403 1 22.94 ? C4' ATP 600 A 1 HETATM 16 O O4' ATP . . . J 6 195.892 170.987 237.856 1 22.94 ? O4' ATP 600 A 1 HETATM 17 C C3' ATP . . . J 6 194.185 169.379 237.604 1 22.94 ? C3' ATP 600 A 1 HETATM 18 O O3' ATP . . . J 6 193.011 169.718 236.87 1 22.94 ? O3' ATP 600 A 1 HETATM 19 C C2' ATP . . . J 6 195.306 169.076 236.634 1 22.94 ? C2' ATP 600 A 1 HETATM 20 O O2' ATP . . . J 6 194.784 168.721 235.355 1 22.94 ? O2' ATP 600 A 1 HETATM 21 C C1' ATP . . . J 6 196.103 170.365 236.589 1 22.94 ? C1' ATP 600 A 1 HETATM 22 N N9 ATP . . . J 6 197.543 170.1 236.416 1 22.94 ? N9 ATP 600 A 1 HETATM 23 C C8 ATP . . . J 6 198.344 169.643 237.373 1 22.94 ? C8 ATP 600 A 1 HETATM 24 N N7 ATP . . . J 6 199.609 169.508 236.922 1 22.94 ? N7 ATP 600 A 1 HETATM 25 C C5 ATP . . . J 6 199.633 169.882 235.641 1 22.94 ? C5 ATP 600 A 1 HETATM 26 C C6 ATP . . . J 6 200.661 169.982 234.585 1 22.94 ? C6 ATP 600 A 1 HETATM 27 N N6 ATP . . . J 6 201.948 169.642 234.805 1 22.94 ? N6 ATP 600 A 1 HETATM 28 N N1 ATP . . . J 6 200.271 170.425 233.386 1 22.94 ? N1 ATP 600 A 1 HETATM 29 C C2 ATP . . . J 6 198.995 170.763 233.146 1 22.94 ? C2 ATP 600 A 1 HETATM 30 N N3 ATP . . . J 6 198.017 170.71 234.061 1 22.94 ? N3 ATP 600 A 1 HETATM 31 C C4 ATP . . . J 6 198.264 170.277 235.313 1 22.94 ? C4 ATP 600 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 141 _model_server_stats.query_time_ms 417 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #