data_6VP0
#
_model_server_result.job_id            T2i6iNS6UE-aXYuAPSxVGw 
_model_server_result.datetime_utc      '2024-12-22 01:35:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vp0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":602}' 
#
_entry.id    6VP0 
#
_exptl.entry_id    6VP0 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              792.075 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VP0 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VP0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 J N N 
? 3 K N N 
#
_chem_comp.formula           'C42 H82 N O10 P' 
_chem_comp.formula_weight    792.075 
_chem_comp.id                P5S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'phosphatidyl serine' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CA C P5S sing 532 n n 
O C P5S doub 533 n n 
C OXT P5S sing 534 n n 
CA N P5S sing 535 n n 
N HN P5S sing 536 n n 
N HNA P5S sing 537 n n 
O19 C1 P5S sing 538 n n 
C1 C2 P5S sing 539 n n 
C1 H1 P5S sing 540 n n 
C1 H1A P5S sing 541 n n 
C2 O37 P5S sing 542 n n 
C2 C3 P5S sing 543 n n 
C2 H2 P5S sing 544 n n 
O16 C3 P5S sing 545 n n 
C3 H3 P5S sing 546 n n 
C3 H3A P5S sing 547 n n 
CB CA P5S sing 548 n n 
CA HA P5S sing 549 n n 
CB OG P5S sing 550 n n 
CB HB P5S sing 551 n n 
CB HBA P5S sing 552 n n 
P12 OG P5S sing 553 n n 
O16 P12 P5S sing 554 n n 
O13 P12 P5S doub 555 n n 
P12 O15 P5S sing 556 n n 
O15 HO15 P5S sing 557 n n 
C20 C17 P5S sing 558 n n 
O19 C17 P5S sing 559 n n 
C17 O18 P5S doub 560 n n 
C21 C20 P5S sing 561 n n 
C20 H20 P5S sing 562 n n 
C20 H20A P5S sing 563 n n 
C21 C22 P5S sing 564 n n 
C21 H21 P5S sing 565 n n 
C21 H21A P5S sing 566 n n 
C23 C22 P5S sing 567 n n 
C22 H22 P5S sing 568 n n 
C22 H22A P5S sing 569 n n 
C24 C23 P5S sing 570 n n 
C23 H23 P5S sing 571 n n 
C23 H23A P5S sing 572 n n 
C25 C24 P5S sing 573 n n 
C24 H24 P5S sing 574 n n 
C24 H24A P5S sing 575 n n 
C26 C25 P5S sing 576 n n 
C25 H25 P5S sing 577 n n 
C25 H25A P5S sing 578 n n 
C26 C27 P5S sing 579 n n 
C26 H26 P5S sing 580 n n 
C26 H26A P5S sing 581 n n 
C27 C28 P5S sing 582 n n 
C27 H27 P5S sing 583 n n 
C27 H27A P5S sing 584 n n 
C29 C28 P5S sing 585 n n 
C28 H28 P5S sing 586 n n 
C28 H28A P5S sing 587 n n 
C30 C29 P5S sing 588 n n 
C29 H29 P5S sing 589 n n 
C29 H29A P5S sing 590 n n 
C31 C30 P5S sing 591 n n 
C30 H30 P5S sing 592 n n 
C30 H30A P5S sing 593 n n 
C31 C32 P5S sing 594 n n 
C31 H31 P5S sing 595 n n 
C31 H31A P5S sing 596 n n 
C33 C32 P5S sing 597 n n 
C32 H32 P5S sing 598 n n 
C32 H32A P5S sing 599 n n 
C33 C34 P5S sing 600 n n 
C33 H33 P5S sing 601 n n 
C33 H33A P5S sing 602 n n 
C35 C34 P5S sing 603 n n 
C34 H34 P5S sing 604 n n 
C34 H34A P5S sing 605 n n 
C36 C35 P5S sing 606 n n 
C35 H35 P5S sing 607 n n 
C35 H35A P5S sing 608 n n 
C36 H36 P5S sing 609 n n 
C36 H36A P5S sing 610 n n 
C36 H36B P5S sing 611 n n 
C38 O37 P5S sing 612 n n 
O47 C38 P5S doub 613 n n 
C38 C39 P5S sing 614 n n 
C40 C39 P5S sing 615 n n 
C39 H39 P5S sing 616 n n 
C39 H39A P5S sing 617 n n 
C41 C40 P5S sing 618 n n 
C40 H40 P5S sing 619 n n 
C40 H40A P5S sing 620 n n 
C42 C41 P5S sing 621 n n 
C41 H41 P5S sing 622 n n 
C41 H41A P5S sing 623 n n 
C43 C42 P5S sing 624 n n 
C42 H42 P5S sing 625 n n 
C42 H42A P5S sing 626 n n 
C43 C44 P5S sing 627 n n 
C43 H43 P5S sing 628 n n 
C43 H43A P5S sing 629 n n 
C44 C45 P5S sing 630 n n 
C44 H44 P5S sing 631 n n 
C44 H44A P5S sing 632 n n 
C45 C46 P5S sing 633 n n 
C45 H45 P5S sing 634 n n 
C45 H45A P5S sing 635 n n 
C46 C48 P5S sing 636 n n 
C46 H46 P5S sing 637 n n 
C46 H46A P5S sing 638 n n 
C48 C49 P5S sing 639 n n 
C48 H48 P5S sing 640 n n 
C48 H48A P5S sing 641 n n 
C49 C50 P5S sing 642 n n 
C49 H49 P5S sing 643 n n 
C49 H49A P5S sing 644 n n 
C50 C51 P5S sing 645 n n 
C50 H50 P5S sing 646 n n 
C50 H50A P5S sing 647 n n 
C51 C52 P5S sing 648 n n 
C51 H51 P5S sing 649 n n 
C51 H51A P5S sing 650 n n 
C53 C52 P5S sing 651 n n 
C52 H52 P5S sing 652 n n 
C52 H52A P5S sing 653 n n 
C53 C54 P5S sing 654 n n 
C53 H53 P5S sing 655 n n 
C53 H53A P5S sing 656 n n 
C55 C54 P5S sing 657 n n 
C54 H54 P5S sing 658 n n 
C54 H54A P5S sing 659 n n 
C55 C56 P5S sing 660 n n 
C55 H55 P5S sing 661 n n 
C55 H55A P5S sing 662 n n 
C56 H56 P5S sing 663 n n 
C56 H56A P5S sing 664 n n 
C56 H56B P5S sing 665 n n 
OXT HXT P5S sing 666 n n 
#
_atom_sites.entry_id                     6VP0 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 POV C 1 601 601 POV POV . 
D 3 P5S C 1 602 1201 P5S P5S . 
E 3 P5S C 1 603 1801 P5S P5S . 
F 2 POV C 1 604 1701 POV POV . 
G 4 3VV C 1 605 1701 3VV 3VV . 
H 5 AV0 C 1 606 1901 AV0 AV0 . 
I 2 POV E 1 601 601 POV POV . 
J 3 P5S E 1 602 1201 P5S P5S . 
K 3 P5S E 1 603 1801 P5S P5S . 
L 2 POV E 1 604 1701 POV POV . 
M 4 3VV E 1 605 1701 3VV 3VV . 
N 5 AV0 E 1 606 1901 AV0 AV0 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C P5S . . . J 3 128.349 83.631 93.702 1 84.15 ? C P5S 602 E 1 
HETATM 2 N N P5S . . . J 3 129.884 82.162 94.989 1 84.15 ? N P5S 602 E 1 
HETATM 3 O O P5S . . . J 3 127.643 84.614 93.698 1 84.15 ? O P5S 602 E 1 
HETATM 4 C C1 P5S . . . J 3 128.036 87.005 99.509 1 84.15 ? C1 P5S 602 E 1 
HETATM 5 C C2 P5S . . . J 3 127.246 85.792 99.914 1 84.15 ? C2 P5S 602 E 1 
HETATM 6 C C3 P5S . . . J 3 126.424 85.254 98.777 1 84.15 ? C3 P5S 602 E 1 
HETATM 7 C CA P5S . . . J 3 128.54 82.76 94.939 1 84.15 ? CA P5S 602 E 1 
HETATM 8 C CB P5S . . . J 3 128.281 83.588 96.185 1 84.15 ? CB P5S 602 E 1 
HETATM 9 O OG P5S . . . J 3 127.659 82.736 97.17 1 84.15 ? OG P5S 602 E 1 
HETATM 10 P P12 P5S . . . J 3 126.137 82.85 97.633 1 84.15 ? P12 P5S 602 E 1 
HETATM 11 O O13 P5S . . . J 3 126.324 81.408 97.964 1 84.15 ? O13 P5S 602 E 1 
HETATM 12 O O15 P5S . . . J 3 125.669 83.247 96.21 1 84.15 ? O15 P5S 602 E 1 
HETATM 13 O O16 P5S . . . J 3 127.029 84.03 98.311 1 84.15 ? O16 P5S 602 E 1 
HETATM 14 C C17 P5S . . . J 3 127.819 89.339 99.857 1 84.15 ? C17 P5S 602 E 1 
HETATM 15 O O18 P5S . . . J 3 129.002 89.489 99.72 1 84.15 ? O18 P5S 602 E 1 
HETATM 16 O O19 P5S . . . J 3 127.201 88.165 99.725 1 84.15 ? O19 P5S 602 E 1 
HETATM 17 C C20 P5S . . . J 3 126.852 90.429 100.21 1 84.15 ? C20 P5S 602 E 1 
HETATM 18 C C21 P5S . . . J 3 127.283 91.219 101.437 1 84.15 ? C21 P5S 602 E 1 
HETATM 19 C C22 P5S . . . J 3 126.312 92.329 101.803 1 84.15 ? C22 P5S 602 E 1 
HETATM 20 C C23 P5S . . . J 3 126.823 93.249 102.901 1 84.15 ? C23 P5S 602 E 1 
HETATM 21 C C24 P5S . . . J 3 125.942 94.462 103.144 1 84.15 ? C24 P5S 602 E 1 
HETATM 22 C C25 P5S . . . J 3 125.53 95.171 101.865 1 84.15 ? C25 P5S 602 E 1 
HETATM 23 C C26 P5S . . . J 3 124.939 96.553 102.08 1 84.15 ? C26 P5S 602 E 1 
HETATM 24 C C27 P5S . . . J 3 125.945 97.571 102.588 1 84.15 ? C27 P5S 602 E 1 
HETATM 25 O O37 P5S . . . J 3 126.317 86.239 100.949 1 84.15 ? O37 P5S 602 E 1 
HETATM 26 C C38 P5S . . . J 3 126.571 85.87 102.213 1 84.15 ? C38 P5S 602 E 1 
HETATM 27 C C39 P5S . . . J 3 125.631 86.54 103.168 1 84.15 ? C39 P5S 602 E 1 
HETATM 28 C C40 P5S . . . J 3 124.858 87.685 102.533 1 84.15 ? C40 P5S 602 E 1 
HETATM 29 C C41 P5S . . . J 3 124.74 88.895 103.444 1 84.15 ? C41 P5S 602 E 1 
HETATM 30 C C42 P5S . . . J 3 123.987 88.636 104.735 1 84.15 ? C42 P5S 602 E 1 
HETATM 31 C C43 P5S . . . J 3 124.027 89.804 105.705 1 84.15 ? C43 P5S 602 E 1 
HETATM 32 C C44 P5S . . . J 3 125.432 90.186 106.142 1 84.15 ? C44 P5S 602 E 1 
HETATM 33 C C45 P5S . . . J 3 125.477 91.294 107.181 1 84.15 ? C45 P5S 602 E 1 
HETATM 34 C C46 P5S . . . J 3 126.883 91.678 107.615 1 84.15 ? C46 P5S 602 E 1 
HETATM 35 O O47 P5S . . . J 3 127.452 85.116 102.525 1 84.15 ? O47 P5S 602 E 1 
HETATM 36 O OXT P5S . . . J 3 129.023 83.203 92.669 1 84.15 ? OXT P5S 602 E 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           36 
#