data_6VPG # _model_server_result.job_id HkC-lo-ic3HLMyRCjsGdYQ _model_server_result.datetime_utc '2024-11-22 22:25:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 6VPG # _exptl.entry_id 6VPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VPG _cell.length_a 83.562 _cell.length_b 83.562 _cell.length_c 114.516 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 189 A ARG 286 1_555 A N TPO 190 A TPO 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C TPO 190 A TPO 287 1_555 A N TPO 191 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C TPO 191 A TPO 288 1_555 A N LEU 192 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD1 ASP 177 A ASP 274 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc2 B O2B ANP . A ANP 401 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6VPG _atom_sites.fract_transf_matrix[1][1] 0.011967 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 401 1 ANP ANP . C 3 GOL A 1 402 1 GOL GOL . D 4 CL A 1 403 1 CL CL . E 4 CL A 1 404 2 CL CL . F 5 MG A 1 405 1 MG MG . G 6 HOH A 1 501 32 HOH HOH . G 6 HOH A 2 502 51 HOH HOH . G 6 HOH A 3 503 22 HOH HOH . G 6 HOH A 4 504 61 HOH HOH . G 6 HOH A 5 505 25 HOH HOH . G 6 HOH A 6 506 60 HOH HOH . G 6 HOH A 7 507 53 HOH HOH . G 6 HOH A 8 508 63 HOH HOH . G 6 HOH A 9 509 16 HOH HOH . G 6 HOH A 10 510 55 HOH HOH . G 6 HOH A 11 511 17 HOH HOH . G 6 HOH A 12 512 23 HOH HOH . G 6 HOH A 13 513 35 HOH HOH . G 6 HOH A 14 514 46 HOH HOH . G 6 HOH A 15 515 62 HOH HOH . G 6 HOH A 16 516 21 HOH HOH . G 6 HOH A 17 517 15 HOH HOH . G 6 HOH A 18 518 28 HOH HOH . G 6 HOH A 19 519 6 HOH HOH . G 6 HOH A 20 520 3 HOH HOH . G 6 HOH A 21 521 34 HOH HOH . G 6 HOH A 22 522 45 HOH HOH . G 6 HOH A 23 523 19 HOH HOH . G 6 HOH A 24 524 56 HOH HOH . G 6 HOH A 25 525 54 HOH HOH . G 6 HOH A 26 526 37 HOH HOH . G 6 HOH A 27 527 49 HOH HOH . G 6 HOH A 28 528 8 HOH HOH . G 6 HOH A 29 529 59 HOH HOH . G 6 HOH A 30 530 58 HOH HOH . G 6 HOH A 31 531 40 HOH HOH . G 6 HOH A 32 532 2 HOH HOH . G 6 HOH A 33 533 29 HOH HOH . G 6 HOH A 34 534 57 HOH HOH . G 6 HOH A 35 535 10 HOH HOH . G 6 HOH A 36 536 31 HOH HOH . G 6 HOH A 37 537 52 HOH HOH . G 6 HOH A 38 538 13 HOH HOH . G 6 HOH A 39 539 1 HOH HOH . G 6 HOH A 40 540 50 HOH HOH . G 6 HOH A 41 541 24 HOH HOH . G 6 HOH A 42 542 5 HOH HOH . G 6 HOH A 43 543 27 HOH HOH . G 6 HOH A 44 544 7 HOH HOH . G 6 HOH A 45 545 26 HOH HOH . G 6 HOH A 46 546 9 HOH HOH . G 6 HOH A 47 547 14 HOH HOH . G 6 HOH A 48 548 20 HOH HOH . G 6 HOH A 49 549 41 HOH HOH . G 6 HOH A 50 550 42 HOH HOH . G 6 HOH A 51 551 39 HOH HOH . G 6 HOH A 52 552 18 HOH HOH . G 6 HOH A 53 553 36 HOH HOH . G 6 HOH A 54 554 11 HOH HOH . G 6 HOH A 55 555 48 HOH HOH . G 6 HOH A 56 556 33 HOH HOH . G 6 HOH A 57 557 4 HOH HOH . G 6 HOH A 58 558 38 HOH HOH . G 6 HOH A 59 559 30 HOH HOH . G 6 HOH A 60 560 43 HOH HOH . G 6 HOH A 61 561 12 HOH HOH . G 6 HOH A 62 562 47 HOH HOH . G 6 HOH A 63 563 44 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x -7.897 _atom_site.Cartn_y 29.584 _atom_site.Cartn_z 8.131 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 150.06 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 405 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #