data_6VPH # _model_server_result.job_id sOpSnmvi73eCGEXdczTarA _model_server_result.datetime_utc '2024-11-07 07:42:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 6VPH # _exptl.entry_id 6VPH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.235 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DITHIANE DIOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6VPH _cell.length_a 89.081 _cell.length_b 89.081 _cell.length_c 183.806 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 89.081 0 91.903 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 149 A TYR 246 1_555 A N CAS 150 A CAS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CAS 150 A CAS 247 1_555 A N HIS 151 A HIS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C ARG 189 A ARG 286 1_555 A N TPO 190 A TPO 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C TPO 190 A TPO 287 1_555 A N TPO 191 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C TPO 191 A TPO 288 1_555 A N LEU 192 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C LEU 192 A LEU 289 1_555 A N CAS 193 A CAS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C CAS 193 A CAS 290 1_555 A N GLY 194 A GLY 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C4 H8 O2 S2' _chem_comp.formula_weight 152.235 _chem_comp.id DTD _chem_comp.mon_nstd_flag . _chem_comp.name 'DITHIANE DIOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTD sing 154 n n S1 S4 DTD sing 155 n n C1 C2 DTD sing 156 n n C1 H11 DTD sing 157 n n C1 H12 DTD sing 158 n n C2 O2 DTD sing 159 n n C2 C3 DTD sing 160 n n C2 H21 DTD sing 161 n n O2 HO2 DTD sing 162 n n C3 O3 DTD sing 163 n n C3 C4 DTD sing 164 n n C3 H31 DTD sing 165 n n O3 HO3 DTD sing 166 n n C4 S4 DTD sing 167 n n C4 H41 DTD sing 168 n n C4 H42 DTD sing 169 n n # _atom_sites.entry_id 6VPH _atom_sites.fract_transf_matrix[1][1] 0.011226 _atom_sites.fract_transf_matrix[1][2] 0.006481 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012962 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 601 1 CL CL . C 2 CL A 1 602 2 CL CL . D 3 DTD A 1 603 1 DTD ODT . E 4 ANP A 1 604 1 ANP ANP . F 5 GOL A 1 605 1 GOL GOL . G 5 GOL A 1 606 2 GOL GOL . H 5 GOL A 1 607 3 GOL GOL . I 5 GOL A 1 608 4 GOL GOL . J 6 HOH A 1 701 168 HOH HOH . J 6 HOH A 2 702 163 HOH HOH . J 6 HOH A 3 703 125 HOH HOH . J 6 HOH A 4 704 98 HOH HOH . J 6 HOH A 5 705 105 HOH HOH . J 6 HOH A 6 706 25 HOH HOH . J 6 HOH A 7 707 24 HOH HOH . J 6 HOH A 8 708 136 HOH HOH . J 6 HOH A 9 709 175 HOH HOH . J 6 HOH A 10 710 58 HOH HOH . J 6 HOH A 11 711 2 HOH HOH . J 6 HOH A 12 712 131 HOH HOH . J 6 HOH A 13 713 18 HOH HOH . J 6 HOH A 14 714 126 HOH HOH . J 6 HOH A 15 715 31 HOH HOH . J 6 HOH A 16 716 20 HOH HOH . J 6 HOH A 17 717 34 HOH HOH . J 6 HOH A 18 718 167 HOH HOH . J 6 HOH A 19 719 15 HOH HOH . J 6 HOH A 20 720 5 HOH HOH . J 6 HOH A 21 721 61 HOH HOH . J 6 HOH A 22 722 119 HOH HOH . J 6 HOH A 23 723 162 HOH HOH . J 6 HOH A 24 724 22 HOH HOH . J 6 HOH A 25 725 68 HOH HOH . J 6 HOH A 26 726 45 HOH HOH . J 6 HOH A 27 727 122 HOH HOH . J 6 HOH A 28 728 129 HOH HOH . J 6 HOH A 29 729 48 HOH HOH . J 6 HOH A 30 730 96 HOH HOH . J 6 HOH A 31 731 90 HOH HOH . J 6 HOH A 32 732 111 HOH HOH . J 6 HOH A 33 733 103 HOH HOH . J 6 HOH A 34 734 43 HOH HOH . J 6 HOH A 35 735 64 HOH HOH . J 6 HOH A 36 736 101 HOH HOH . J 6 HOH A 37 737 65 HOH HOH . J 6 HOH A 38 738 62 HOH HOH . J 6 HOH A 39 739 170 HOH HOH . J 6 HOH A 40 740 37 HOH HOH . J 6 HOH A 41 741 46 HOH HOH . J 6 HOH A 42 742 106 HOH HOH . J 6 HOH A 43 743 4 HOH HOH . J 6 HOH A 44 744 27 HOH HOH . J 6 HOH A 45 745 135 HOH HOH . J 6 HOH A 46 746 117 HOH HOH . J 6 HOH A 47 747 84 HOH HOH . J 6 HOH A 48 748 95 HOH HOH . J 6 HOH A 49 749 94 HOH HOH . J 6 HOH A 50 750 87 HOH HOH . J 6 HOH A 51 751 100 HOH HOH . J 6 HOH A 52 752 35 HOH HOH . J 6 HOH A 53 753 50 HOH HOH . J 6 HOH A 54 754 40 HOH HOH . J 6 HOH A 55 755 156 HOH HOH . J 6 HOH A 56 756 60 HOH HOH . J 6 HOH A 57 757 3 HOH HOH . J 6 HOH A 58 758 172 HOH HOH . J 6 HOH A 59 759 14 HOH HOH . J 6 HOH A 60 760 66 HOH HOH . J 6 HOH A 61 761 19 HOH HOH . J 6 HOH A 62 762 8 HOH HOH . J 6 HOH A 63 763 79 HOH HOH . J 6 HOH A 64 764 160 HOH HOH . J 6 HOH A 65 765 116 HOH HOH . J 6 HOH A 66 766 11 HOH HOH . J 6 HOH A 67 767 39 HOH HOH . J 6 HOH A 68 768 67 HOH HOH . J 6 HOH A 69 769 82 HOH HOH . J 6 HOH A 70 770 33 HOH HOH . J 6 HOH A 71 771 130 HOH HOH . J 6 HOH A 72 772 71 HOH HOH . J 6 HOH A 73 773 54 HOH HOH . J 6 HOH A 74 774 26 HOH HOH . J 6 HOH A 75 775 47 HOH HOH . J 6 HOH A 76 776 36 HOH HOH . J 6 HOH A 77 777 51 HOH HOH . J 6 HOH A 78 778 164 HOH HOH . J 6 HOH A 79 779 21 HOH HOH . J 6 HOH A 80 780 113 HOH HOH . J 6 HOH A 81 781 76 HOH HOH . J 6 HOH A 82 782 121 HOH HOH . J 6 HOH A 83 783 6 HOH HOH . J 6 HOH A 84 784 32 HOH HOH . J 6 HOH A 85 785 132 HOH HOH . J 6 HOH A 86 786 104 HOH HOH . J 6 HOH A 87 787 29 HOH HOH . J 6 HOH A 88 788 57 HOH HOH . J 6 HOH A 89 789 120 HOH HOH . J 6 HOH A 90 790 137 HOH HOH . J 6 HOH A 91 791 1 HOH HOH . J 6 HOH A 92 792 146 HOH HOH . J 6 HOH A 93 793 171 HOH HOH . J 6 HOH A 94 794 112 HOH HOH . J 6 HOH A 95 795 38 HOH HOH . J 6 HOH A 96 796 52 HOH HOH . J 6 HOH A 97 797 44 HOH HOH . J 6 HOH A 98 798 92 HOH HOH . J 6 HOH A 99 799 109 HOH HOH . J 6 HOH A 100 800 81 HOH HOH . J 6 HOH A 101 801 169 HOH HOH . J 6 HOH A 102 802 42 HOH HOH . J 6 HOH A 103 803 124 HOH HOH . J 6 HOH A 104 804 30 HOH HOH . J 6 HOH A 105 805 10 HOH HOH . J 6 HOH A 106 806 91 HOH HOH . J 6 HOH A 107 807 13 HOH HOH . J 6 HOH A 108 808 28 HOH HOH . J 6 HOH A 109 809 16 HOH HOH . J 6 HOH A 110 810 17 HOH HOH . J 6 HOH A 111 811 80 HOH HOH . J 6 HOH A 112 812 134 HOH HOH . J 6 HOH A 113 813 78 HOH HOH . J 6 HOH A 114 814 9 HOH HOH . J 6 HOH A 115 815 107 HOH HOH . J 6 HOH A 116 816 53 HOH HOH . J 6 HOH A 117 817 41 HOH HOH . J 6 HOH A 118 818 148 HOH HOH . J 6 HOH A 119 819 165 HOH HOH . J 6 HOH A 120 820 74 HOH HOH . J 6 HOH A 121 821 118 HOH HOH . J 6 HOH A 122 822 55 HOH HOH . J 6 HOH A 123 823 123 HOH HOH . J 6 HOH A 124 824 83 HOH HOH . J 6 HOH A 125 825 69 HOH HOH . J 6 HOH A 126 826 85 HOH HOH . J 6 HOH A 127 827 7 HOH HOH . J 6 HOH A 128 828 73 HOH HOH . J 6 HOH A 129 829 108 HOH HOH . J 6 HOH A 130 830 88 HOH HOH . J 6 HOH A 131 831 72 HOH HOH . J 6 HOH A 132 832 23 HOH HOH . J 6 HOH A 133 833 12 HOH HOH . J 6 HOH A 134 834 86 HOH HOH . J 6 HOH A 135 835 133 HOH HOH . J 6 HOH A 136 836 59 HOH HOH . J 6 HOH A 137 837 114 HOH HOH . J 6 HOH A 138 838 158 HOH HOH . J 6 HOH A 139 839 144 HOH HOH . J 6 HOH A 140 840 159 HOH HOH . J 6 HOH A 141 841 157 HOH HOH . J 6 HOH A 142 842 89 HOH HOH . J 6 HOH A 143 843 110 HOH HOH . J 6 HOH A 144 844 138 HOH HOH . J 6 HOH A 145 845 166 HOH HOH . J 6 HOH A 146 846 150 HOH HOH . J 6 HOH A 147 847 139 HOH HOH . J 6 HOH A 148 848 145 HOH HOH . J 6 HOH A 149 849 115 HOH HOH . J 6 HOH A 150 850 75 HOH HOH . J 6 HOH A 151 851 147 HOH HOH . J 6 HOH A 152 852 173 HOH HOH . J 6 HOH A 153 853 77 HOH HOH . J 6 HOH A 154 854 143 HOH HOH . J 6 HOH A 155 855 152 HOH HOH . J 6 HOH A 156 856 128 HOH HOH . J 6 HOH A 157 857 127 HOH HOH . J 6 HOH A 158 858 174 HOH HOH . J 6 HOH A 159 859 161 HOH HOH . J 6 HOH A 160 860 142 HOH HOH . J 6 HOH A 161 861 97 HOH HOH . J 6 HOH A 162 862 93 HOH HOH . J 6 HOH A 163 863 99 HOH HOH . J 6 HOH A 164 864 151 HOH HOH . J 6 HOH A 165 865 140 HOH HOH . J 6 HOH A 166 866 70 HOH HOH . J 6 HOH A 167 867 154 HOH HOH . J 6 HOH A 168 868 102 HOH HOH . J 6 HOH A 169 869 155 HOH HOH . J 6 HOH A 170 870 149 HOH HOH . J 6 HOH A 171 871 63 HOH HOH . J 6 HOH A 172 872 56 HOH HOH . J 6 HOH A 173 873 141 HOH HOH . J 6 HOH A 174 874 153 HOH HOH . J 6 HOH A 175 875 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTD . . . D 3 26.118 17.86 43.766 1 46.51 ? S1 DTD 603 A 1 HETATM 2 C C1 DTD . . . D 3 25.572 18.111 45.43 1 46.99 ? C1 DTD 603 A 1 HETATM 3 C C2 DTD . . . D 3 26.505 18.956 46.228 1 45.04 ? C2 DTD 603 A 1 HETATM 4 O O2 DTD . . . D 3 25.825 19.395 47.34 1 43.35 ? O2 DTD 603 A 1 HETATM 5 C C3 DTD . . . D 3 26.974 20.148 45.467 1 41.99 ? C3 DTD 603 A 1 HETATM 6 O O3 DTD . . . D 3 27.295 21.137 46.366 1 38.81 ? O3 DTD 603 A 1 HETATM 7 C C4 DTD . . . D 3 28.195 19.849 44.67 1 43.86 ? C4 DTD 603 A 1 HETATM 8 S S4 DTD . . . D 3 28.076 18.334 43.767 1 52.27 ? S4 DTD 603 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #