data_6VPI # _model_server_result.job_id n7hRRp9hCUVzPtd8K13a9w _model_server_result.datetime_utc '2024-12-09 03:17:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vpi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6VPI # _exptl.entry_id 6VPI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VPI _cell.length_a 85.292 _cell.length_b 85.292 _cell.length_c 128.246 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VPI _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 64.123 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 193 A CYS 290 1_555 A SG CYS 193 A CYS 290 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A OD1 ASN 164 A ASN 261 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc2 A OD2 ASP 177 A ASP 274 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc3 B O3G ANP . A ANP 601 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc4 B O2A ANP . A ANP 601 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc5 C MG MG . A MG 602 1_555 F O HOH . A HOH 785 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc6 C MG MG . A MG 602 1_555 F O HOH . A HOH 889 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc7 D MG MG . A MG 603 1_555 F O HOH . A HOH 882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc8 D MG MG . A MG 603 1_555 F O HOH . A HOH 889 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6VPI _atom_sites.fract_transf_matrix[1][1] 0.011724 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 601 1 ANP ANP . C 3 MG A 1 602 2 MG MG . D 3 MG A 1 603 3 MG MG . E 4 MLA A 1 604 4 MLA MAL . F 5 HOH A 1 701 153 HOH HOH . F 5 HOH A 2 702 199 HOH HOH . F 5 HOH A 3 703 144 HOH HOH . F 5 HOH A 4 704 193 HOH HOH . F 5 HOH A 5 705 1 HOH HOH . F 5 HOH A 6 706 36 HOH HOH . F 5 HOH A 7 707 206 HOH HOH . F 5 HOH A 8 708 126 HOH HOH . F 5 HOH A 9 709 211 HOH HOH . F 5 HOH A 10 710 212 HOH HOH . F 5 HOH A 11 711 173 HOH HOH . F 5 HOH A 12 712 231 HOH HOH . F 5 HOH A 13 713 233 HOH HOH . F 5 HOH A 14 714 208 HOH HOH . F 5 HOH A 15 715 168 HOH HOH . F 5 HOH A 16 716 179 HOH HOH . F 5 HOH A 17 717 172 HOH HOH . F 5 HOH A 18 718 32 HOH HOH . F 5 HOH A 19 719 158 HOH HOH . F 5 HOH A 20 720 134 HOH HOH . F 5 HOH A 21 721 176 HOH HOH . F 5 HOH A 22 722 93 HOH HOH . F 5 HOH A 23 723 115 HOH HOH . F 5 HOH A 24 724 31 HOH HOH . F 5 HOH A 25 725 224 HOH HOH . F 5 HOH A 26 726 230 HOH HOH . F 5 HOH A 27 727 110 HOH HOH . F 5 HOH A 28 728 114 HOH HOH . F 5 HOH A 29 729 154 HOH HOH . F 5 HOH A 30 730 15 HOH HOH . F 5 HOH A 31 731 50 HOH HOH . F 5 HOH A 32 732 103 HOH HOH . F 5 HOH A 33 733 177 HOH HOH . F 5 HOH A 34 734 41 HOH HOH . F 5 HOH A 35 735 57 HOH HOH . F 5 HOH A 36 736 136 HOH HOH . F 5 HOH A 37 737 167 HOH HOH . F 5 HOH A 38 738 53 HOH HOH . F 5 HOH A 39 739 166 HOH HOH . F 5 HOH A 40 740 11 HOH HOH . F 5 HOH A 41 741 190 HOH HOH . F 5 HOH A 42 742 43 HOH HOH . F 5 HOH A 43 743 170 HOH HOH . F 5 HOH A 44 744 87 HOH HOH . F 5 HOH A 45 745 229 HOH HOH . F 5 HOH A 46 746 85 HOH HOH . F 5 HOH A 47 747 180 HOH HOH . F 5 HOH A 48 748 28 HOH HOH . F 5 HOH A 49 749 4 HOH HOH . F 5 HOH A 50 750 39 HOH HOH . F 5 HOH A 51 751 200 HOH HOH . F 5 HOH A 52 752 210 HOH HOH . F 5 HOH A 53 753 198 HOH HOH . F 5 HOH A 54 754 12 HOH HOH . F 5 HOH A 55 755 14 HOH HOH . F 5 HOH A 56 756 204 HOH HOH . F 5 HOH A 57 757 192 HOH HOH . F 5 HOH A 58 758 205 HOH HOH . F 5 HOH A 59 759 189 HOH HOH . F 5 HOH A 60 760 147 HOH HOH . F 5 HOH A 61 761 56 HOH HOH . F 5 HOH A 62 762 22 HOH HOH . F 5 HOH A 63 763 54 HOH HOH . F 5 HOH A 64 764 140 HOH HOH . F 5 HOH A 65 765 17 HOH HOH . F 5 HOH A 66 766 16 HOH HOH . F 5 HOH A 67 767 95 HOH HOH . F 5 HOH A 68 768 102 HOH HOH . F 5 HOH A 69 769 6 HOH HOH . F 5 HOH A 70 770 19 HOH HOH . F 5 HOH A 71 771 101 HOH HOH . F 5 HOH A 72 772 62 HOH HOH . F 5 HOH A 73 773 225 HOH HOH . F 5 HOH A 74 774 5 HOH HOH . F 5 HOH A 75 775 18 HOH HOH . F 5 HOH A 76 776 222 HOH HOH . F 5 HOH A 77 777 160 HOH HOH . F 5 HOH A 78 778 94 HOH HOH . F 5 HOH A 79 779 3 HOH HOH . F 5 HOH A 80 780 64 HOH HOH . F 5 HOH A 81 781 74 HOH HOH . F 5 HOH A 82 782 52 HOH HOH . F 5 HOH A 83 783 70 HOH HOH . F 5 HOH A 84 784 30 HOH HOH . F 5 HOH A 85 785 174 HOH HOH . F 5 HOH A 86 786 24 HOH HOH . F 5 HOH A 87 787 35 HOH HOH . F 5 HOH A 88 788 107 HOH HOH . F 5 HOH A 89 789 132 HOH HOH . F 5 HOH A 90 790 69 HOH HOH . F 5 HOH A 91 791 26 HOH HOH . F 5 HOH A 92 792 63 HOH HOH . F 5 HOH A 93 793 82 HOH HOH . F 5 HOH A 94 794 29 HOH HOH . F 5 HOH A 95 795 226 HOH HOH . F 5 HOH A 96 796 91 HOH HOH . F 5 HOH A 97 797 27 HOH HOH . F 5 HOH A 98 798 7 HOH HOH . F 5 HOH A 99 799 135 HOH HOH . F 5 HOH A 100 800 109 HOH HOH . F 5 HOH A 101 801 202 HOH HOH . F 5 HOH A 102 802 10 HOH HOH . F 5 HOH A 103 803 99 HOH HOH . F 5 HOH A 104 804 49 HOH HOH . F 5 HOH A 105 805 13 HOH HOH . F 5 HOH A 106 806 152 HOH HOH . F 5 HOH A 107 807 196 HOH HOH . F 5 HOH A 108 808 116 HOH HOH . F 5 HOH A 109 809 44 HOH HOH . F 5 HOH A 110 810 84 HOH HOH . F 5 HOH A 111 811 184 HOH HOH . F 5 HOH A 112 812 59 HOH HOH . F 5 HOH A 113 813 33 HOH HOH . F 5 HOH A 114 814 169 HOH HOH . F 5 HOH A 115 815 8 HOH HOH . F 5 HOH A 116 816 171 HOH HOH . F 5 HOH A 117 817 232 HOH HOH . F 5 HOH A 118 818 47 HOH HOH . F 5 HOH A 119 819 75 HOH HOH . F 5 HOH A 120 820 61 HOH HOH . F 5 HOH A 121 821 72 HOH HOH . F 5 HOH A 122 822 66 HOH HOH . F 5 HOH A 123 823 217 HOH HOH . F 5 HOH A 124 824 104 HOH HOH . F 5 HOH A 125 825 45 HOH HOH . F 5 HOH A 126 826 92 HOH HOH . F 5 HOH A 127 827 2 HOH HOH . F 5 HOH A 128 828 122 HOH HOH . F 5 HOH A 129 829 48 HOH HOH . F 5 HOH A 130 830 223 HOH HOH . F 5 HOH A 131 831 80 HOH HOH . F 5 HOH A 132 832 131 HOH HOH . F 5 HOH A 133 833 20 HOH HOH . F 5 HOH A 134 834 145 HOH HOH . F 5 HOH A 135 835 71 HOH HOH . F 5 HOH A 136 836 40 HOH HOH . F 5 HOH A 137 837 106 HOH HOH . F 5 HOH A 138 838 163 HOH HOH . F 5 HOH A 139 839 175 HOH HOH . F 5 HOH A 140 840 34 HOH HOH . F 5 HOH A 141 841 60 HOH HOH . F 5 HOH A 142 842 118 HOH HOH . F 5 HOH A 143 843 25 HOH HOH . F 5 HOH A 144 844 105 HOH HOH . F 5 HOH A 145 845 100 HOH HOH . F 5 HOH A 146 846 55 HOH HOH . F 5 HOH A 147 847 164 HOH HOH . F 5 HOH A 148 848 149 HOH HOH . F 5 HOH A 149 849 178 HOH HOH . F 5 HOH A 150 850 197 HOH HOH . F 5 HOH A 151 851 214 HOH HOH . F 5 HOH A 152 852 188 HOH HOH . F 5 HOH A 153 853 137 HOH HOH . F 5 HOH A 154 854 156 HOH HOH . F 5 HOH A 155 855 203 HOH HOH . F 5 HOH A 156 856 68 HOH HOH . F 5 HOH A 157 857 227 HOH HOH . F 5 HOH A 158 858 182 HOH HOH . F 5 HOH A 159 859 213 HOH HOH . F 5 HOH A 160 860 90 HOH HOH . F 5 HOH A 161 861 78 HOH HOH . F 5 HOH A 162 862 46 HOH HOH . F 5 HOH A 163 863 86 HOH HOH . F 5 HOH A 164 864 209 HOH HOH . F 5 HOH A 165 865 112 HOH HOH . F 5 HOH A 166 866 157 HOH HOH . F 5 HOH A 167 867 37 HOH HOH . F 5 HOH A 168 868 23 HOH HOH . F 5 HOH A 169 869 155 HOH HOH . F 5 HOH A 170 870 146 HOH HOH . F 5 HOH A 171 871 120 HOH HOH . F 5 HOH A 172 872 97 HOH HOH . F 5 HOH A 173 873 130 HOH HOH . F 5 HOH A 174 874 38 HOH HOH . F 5 HOH A 175 875 228 HOH HOH . F 5 HOH A 176 876 51 HOH HOH . F 5 HOH A 177 877 77 HOH HOH . F 5 HOH A 178 878 58 HOH HOH . F 5 HOH A 179 879 150 HOH HOH . F 5 HOH A 180 880 42 HOH HOH . F 5 HOH A 181 881 65 HOH HOH . F 5 HOH A 182 882 124 HOH HOH . F 5 HOH A 183 883 81 HOH HOH . F 5 HOH A 184 884 139 HOH HOH . F 5 HOH A 185 885 98 HOH HOH . F 5 HOH A 186 886 88 HOH HOH . F 5 HOH A 187 887 127 HOH HOH . F 5 HOH A 188 888 143 HOH HOH . F 5 HOH A 189 889 67 HOH HOH . F 5 HOH A 190 890 221 HOH HOH . F 5 HOH A 191 891 9 HOH HOH . F 5 HOH A 192 892 108 HOH HOH . F 5 HOH A 193 893 83 HOH HOH . F 5 HOH A 194 894 119 HOH HOH . F 5 HOH A 195 895 117 HOH HOH . F 5 HOH A 196 896 181 HOH HOH . F 5 HOH A 197 897 186 HOH HOH . F 5 HOH A 198 898 207 HOH HOH . F 5 HOH A 199 899 183 HOH HOH . F 5 HOH A 200 900 201 HOH HOH . F 5 HOH A 201 901 111 HOH HOH . F 5 HOH A 202 902 195 HOH HOH . F 5 HOH A 203 903 187 HOH HOH . F 5 HOH A 204 904 216 HOH HOH . F 5 HOH A 205 905 219 HOH HOH . F 5 HOH A 206 906 142 HOH HOH . F 5 HOH A 207 907 138 HOH HOH . F 5 HOH A 208 908 159 HOH HOH . F 5 HOH A 209 909 128 HOH HOH . F 5 HOH A 210 910 79 HOH HOH . F 5 HOH A 211 911 215 HOH HOH . F 5 HOH A 212 912 165 HOH HOH . F 5 HOH A 213 913 123 HOH HOH . F 5 HOH A 214 914 73 HOH HOH . F 5 HOH A 215 915 121 HOH HOH . F 5 HOH A 216 916 161 HOH HOH . F 5 HOH A 217 917 89 HOH HOH . F 5 HOH A 218 918 133 HOH HOH . F 5 HOH A 219 919 185 HOH HOH . F 5 HOH A 220 920 141 HOH HOH . F 5 HOH A 221 921 76 HOH HOH . F 5 HOH A 222 922 125 HOH HOH . F 5 HOH A 223 923 96 HOH HOH . F 5 HOH A 224 924 113 HOH HOH . F 5 HOH A 225 925 194 HOH HOH . F 5 HOH A 226 926 162 HOH HOH . F 5 HOH A 227 927 148 HOH HOH . F 5 HOH A 228 928 220 HOH HOH . F 5 HOH A 229 929 129 HOH HOH . F 5 HOH A 230 930 21 HOH HOH . F 5 HOH A 231 931 151 HOH HOH . F 5 HOH A 232 932 191 HOH HOH . F 5 HOH A 233 933 218 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -21.271 _atom_site.Cartn_y -0.482 _atom_site.Cartn_z 25.113 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 67.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #