data_6VPI
#
_model_server_result.job_id            u3ipdi2M22GsQc4LjAo97A 
_model_server_result.datetime_utc      '2024-11-07 07:34:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vpi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    6VPI 
#
_exptl.entry_id    6VPI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VPI 
_cell.length_a            85.292 
_cell.length_b            85.292 
_cell.length_c            128.246 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VPI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 64.123 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 193 A CYS 290 1_555 A SG CYS 193 A CYS 290 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc1 A OD1 ASN 164 A ASN 261 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc2 A OD2 ASP 177 A ASP 274 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc3 B O3G ANP . A ANP 601 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc4 B O2A ANP . A ANP 601 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
metalc ? metalc5 C MG MG . A MG 602 1_555 F O HOH . A HOH 785 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
metalc ? metalc6 C MG MG . A MG 602 1_555 F O HOH . A HOH 889 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
metalc ? metalc7 D MG MG . A MG 603 1_555 F O HOH . A HOH 882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc8 D MG MG . A MG 603 1_555 F O HOH . A HOH 889 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6VPI 
_atom_sites.fract_transf_matrix[1][1]    0.011724 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011724 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007798 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ANP A 1 601 1 ANP ANP . 
C 3 MG A 1 602 2 MG MG . 
D 3 MG A 1 603 3 MG MG . 
E 4 MLA A 1 604 4 MLA MAL . 
F 5 HOH A 1 701 153 HOH HOH . 
F 5 HOH A 2 702 199 HOH HOH . 
F 5 HOH A 3 703 144 HOH HOH . 
F 5 HOH A 4 704 193 HOH HOH . 
F 5 HOH A 5 705 1 HOH HOH . 
F 5 HOH A 6 706 36 HOH HOH . 
F 5 HOH A 7 707 206 HOH HOH . 
F 5 HOH A 8 708 126 HOH HOH . 
F 5 HOH A 9 709 211 HOH HOH . 
F 5 HOH A 10 710 212 HOH HOH . 
F 5 HOH A 11 711 173 HOH HOH . 
F 5 HOH A 12 712 231 HOH HOH . 
F 5 HOH A 13 713 233 HOH HOH . 
F 5 HOH A 14 714 208 HOH HOH . 
F 5 HOH A 15 715 168 HOH HOH . 
F 5 HOH A 16 716 179 HOH HOH . 
F 5 HOH A 17 717 172 HOH HOH . 
F 5 HOH A 18 718 32 HOH HOH . 
F 5 HOH A 19 719 158 HOH HOH . 
F 5 HOH A 20 720 134 HOH HOH . 
F 5 HOH A 21 721 176 HOH HOH . 
F 5 HOH A 22 722 93 HOH HOH . 
F 5 HOH A 23 723 115 HOH HOH . 
F 5 HOH A 24 724 31 HOH HOH . 
F 5 HOH A 25 725 224 HOH HOH . 
F 5 HOH A 26 726 230 HOH HOH . 
F 5 HOH A 27 727 110 HOH HOH . 
F 5 HOH A 28 728 114 HOH HOH . 
F 5 HOH A 29 729 154 HOH HOH . 
F 5 HOH A 30 730 15 HOH HOH . 
F 5 HOH A 31 731 50 HOH HOH . 
F 5 HOH A 32 732 103 HOH HOH . 
F 5 HOH A 33 733 177 HOH HOH . 
F 5 HOH A 34 734 41 HOH HOH . 
F 5 HOH A 35 735 57 HOH HOH . 
F 5 HOH A 36 736 136 HOH HOH . 
F 5 HOH A 37 737 167 HOH HOH . 
F 5 HOH A 38 738 53 HOH HOH . 
F 5 HOH A 39 739 166 HOH HOH . 
F 5 HOH A 40 740 11 HOH HOH . 
F 5 HOH A 41 741 190 HOH HOH . 
F 5 HOH A 42 742 43 HOH HOH . 
F 5 HOH A 43 743 170 HOH HOH . 
F 5 HOH A 44 744 87 HOH HOH . 
F 5 HOH A 45 745 229 HOH HOH . 
F 5 HOH A 46 746 85 HOH HOH . 
F 5 HOH A 47 747 180 HOH HOH . 
F 5 HOH A 48 748 28 HOH HOH . 
F 5 HOH A 49 749 4 HOH HOH . 
F 5 HOH A 50 750 39 HOH HOH . 
F 5 HOH A 51 751 200 HOH HOH . 
F 5 HOH A 52 752 210 HOH HOH . 
F 5 HOH A 53 753 198 HOH HOH . 
F 5 HOH A 54 754 12 HOH HOH . 
F 5 HOH A 55 755 14 HOH HOH . 
F 5 HOH A 56 756 204 HOH HOH . 
F 5 HOH A 57 757 192 HOH HOH . 
F 5 HOH A 58 758 205 HOH HOH . 
F 5 HOH A 59 759 189 HOH HOH . 
F 5 HOH A 60 760 147 HOH HOH . 
F 5 HOH A 61 761 56 HOH HOH . 
F 5 HOH A 62 762 22 HOH HOH . 
F 5 HOH A 63 763 54 HOH HOH . 
F 5 HOH A 64 764 140 HOH HOH . 
F 5 HOH A 65 765 17 HOH HOH . 
F 5 HOH A 66 766 16 HOH HOH . 
F 5 HOH A 67 767 95 HOH HOH . 
F 5 HOH A 68 768 102 HOH HOH . 
F 5 HOH A 69 769 6 HOH HOH . 
F 5 HOH A 70 770 19 HOH HOH . 
F 5 HOH A 71 771 101 HOH HOH . 
F 5 HOH A 72 772 62 HOH HOH . 
F 5 HOH A 73 773 225 HOH HOH . 
F 5 HOH A 74 774 5 HOH HOH . 
F 5 HOH A 75 775 18 HOH HOH . 
F 5 HOH A 76 776 222 HOH HOH . 
F 5 HOH A 77 777 160 HOH HOH . 
F 5 HOH A 78 778 94 HOH HOH . 
F 5 HOH A 79 779 3 HOH HOH . 
F 5 HOH A 80 780 64 HOH HOH . 
F 5 HOH A 81 781 74 HOH HOH . 
F 5 HOH A 82 782 52 HOH HOH . 
F 5 HOH A 83 783 70 HOH HOH . 
F 5 HOH A 84 784 30 HOH HOH . 
F 5 HOH A 85 785 174 HOH HOH . 
F 5 HOH A 86 786 24 HOH HOH . 
F 5 HOH A 87 787 35 HOH HOH . 
F 5 HOH A 88 788 107 HOH HOH . 
F 5 HOH A 89 789 132 HOH HOH . 
F 5 HOH A 90 790 69 HOH HOH . 
F 5 HOH A 91 791 26 HOH HOH . 
F 5 HOH A 92 792 63 HOH HOH . 
F 5 HOH A 93 793 82 HOH HOH . 
F 5 HOH A 94 794 29 HOH HOH . 
F 5 HOH A 95 795 226 HOH HOH . 
F 5 HOH A 96 796 91 HOH HOH . 
F 5 HOH A 97 797 27 HOH HOH . 
F 5 HOH A 98 798 7 HOH HOH . 
F 5 HOH A 99 799 135 HOH HOH . 
F 5 HOH A 100 800 109 HOH HOH . 
F 5 HOH A 101 801 202 HOH HOH . 
F 5 HOH A 102 802 10 HOH HOH . 
F 5 HOH A 103 803 99 HOH HOH . 
F 5 HOH A 104 804 49 HOH HOH . 
F 5 HOH A 105 805 13 HOH HOH . 
F 5 HOH A 106 806 152 HOH HOH . 
F 5 HOH A 107 807 196 HOH HOH . 
F 5 HOH A 108 808 116 HOH HOH . 
F 5 HOH A 109 809 44 HOH HOH . 
F 5 HOH A 110 810 84 HOH HOH . 
F 5 HOH A 111 811 184 HOH HOH . 
F 5 HOH A 112 812 59 HOH HOH . 
F 5 HOH A 113 813 33 HOH HOH . 
F 5 HOH A 114 814 169 HOH HOH . 
F 5 HOH A 115 815 8 HOH HOH . 
F 5 HOH A 116 816 171 HOH HOH . 
F 5 HOH A 117 817 232 HOH HOH . 
F 5 HOH A 118 818 47 HOH HOH . 
F 5 HOH A 119 819 75 HOH HOH . 
F 5 HOH A 120 820 61 HOH HOH . 
F 5 HOH A 121 821 72 HOH HOH . 
F 5 HOH A 122 822 66 HOH HOH . 
F 5 HOH A 123 823 217 HOH HOH . 
F 5 HOH A 124 824 104 HOH HOH . 
F 5 HOH A 125 825 45 HOH HOH . 
F 5 HOH A 126 826 92 HOH HOH . 
F 5 HOH A 127 827 2 HOH HOH . 
F 5 HOH A 128 828 122 HOH HOH . 
F 5 HOH A 129 829 48 HOH HOH . 
F 5 HOH A 130 830 223 HOH HOH . 
F 5 HOH A 131 831 80 HOH HOH . 
F 5 HOH A 132 832 131 HOH HOH . 
F 5 HOH A 133 833 20 HOH HOH . 
F 5 HOH A 134 834 145 HOH HOH . 
F 5 HOH A 135 835 71 HOH HOH . 
F 5 HOH A 136 836 40 HOH HOH . 
F 5 HOH A 137 837 106 HOH HOH . 
F 5 HOH A 138 838 163 HOH HOH . 
F 5 HOH A 139 839 175 HOH HOH . 
F 5 HOH A 140 840 34 HOH HOH . 
F 5 HOH A 141 841 60 HOH HOH . 
F 5 HOH A 142 842 118 HOH HOH . 
F 5 HOH A 143 843 25 HOH HOH . 
F 5 HOH A 144 844 105 HOH HOH . 
F 5 HOH A 145 845 100 HOH HOH . 
F 5 HOH A 146 846 55 HOH HOH . 
F 5 HOH A 147 847 164 HOH HOH . 
F 5 HOH A 148 848 149 HOH HOH . 
F 5 HOH A 149 849 178 HOH HOH . 
F 5 HOH A 150 850 197 HOH HOH . 
F 5 HOH A 151 851 214 HOH HOH . 
F 5 HOH A 152 852 188 HOH HOH . 
F 5 HOH A 153 853 137 HOH HOH . 
F 5 HOH A 154 854 156 HOH HOH . 
F 5 HOH A 155 855 203 HOH HOH . 
F 5 HOH A 156 856 68 HOH HOH . 
F 5 HOH A 157 857 227 HOH HOH . 
F 5 HOH A 158 858 182 HOH HOH . 
F 5 HOH A 159 859 213 HOH HOH . 
F 5 HOH A 160 860 90 HOH HOH . 
F 5 HOH A 161 861 78 HOH HOH . 
F 5 HOH A 162 862 46 HOH HOH . 
F 5 HOH A 163 863 86 HOH HOH . 
F 5 HOH A 164 864 209 HOH HOH . 
F 5 HOH A 165 865 112 HOH HOH . 
F 5 HOH A 166 866 157 HOH HOH . 
F 5 HOH A 167 867 37 HOH HOH . 
F 5 HOH A 168 868 23 HOH HOH . 
F 5 HOH A 169 869 155 HOH HOH . 
F 5 HOH A 170 870 146 HOH HOH . 
F 5 HOH A 171 871 120 HOH HOH . 
F 5 HOH A 172 872 97 HOH HOH . 
F 5 HOH A 173 873 130 HOH HOH . 
F 5 HOH A 174 874 38 HOH HOH . 
F 5 HOH A 175 875 228 HOH HOH . 
F 5 HOH A 176 876 51 HOH HOH . 
F 5 HOH A 177 877 77 HOH HOH . 
F 5 HOH A 178 878 58 HOH HOH . 
F 5 HOH A 179 879 150 HOH HOH . 
F 5 HOH A 180 880 42 HOH HOH . 
F 5 HOH A 181 881 65 HOH HOH . 
F 5 HOH A 182 882 124 HOH HOH . 
F 5 HOH A 183 883 81 HOH HOH . 
F 5 HOH A 184 884 139 HOH HOH . 
F 5 HOH A 185 885 98 HOH HOH . 
F 5 HOH A 186 886 88 HOH HOH . 
F 5 HOH A 187 887 127 HOH HOH . 
F 5 HOH A 188 888 143 HOH HOH . 
F 5 HOH A 189 889 67 HOH HOH . 
F 5 HOH A 190 890 221 HOH HOH . 
F 5 HOH A 191 891 9 HOH HOH . 
F 5 HOH A 192 892 108 HOH HOH . 
F 5 HOH A 193 893 83 HOH HOH . 
F 5 HOH A 194 894 119 HOH HOH . 
F 5 HOH A 195 895 117 HOH HOH . 
F 5 HOH A 196 896 181 HOH HOH . 
F 5 HOH A 197 897 186 HOH HOH . 
F 5 HOH A 198 898 207 HOH HOH . 
F 5 HOH A 199 899 183 HOH HOH . 
F 5 HOH A 200 900 201 HOH HOH . 
F 5 HOH A 201 901 111 HOH HOH . 
F 5 HOH A 202 902 195 HOH HOH . 
F 5 HOH A 203 903 187 HOH HOH . 
F 5 HOH A 204 904 216 HOH HOH . 
F 5 HOH A 205 905 219 HOH HOH . 
F 5 HOH A 206 906 142 HOH HOH . 
F 5 HOH A 207 907 138 HOH HOH . 
F 5 HOH A 208 908 159 HOH HOH . 
F 5 HOH A 209 909 128 HOH HOH . 
F 5 HOH A 210 910 79 HOH HOH . 
F 5 HOH A 211 911 215 HOH HOH . 
F 5 HOH A 212 912 165 HOH HOH . 
F 5 HOH A 213 913 123 HOH HOH . 
F 5 HOH A 214 914 73 HOH HOH . 
F 5 HOH A 215 915 121 HOH HOH . 
F 5 HOH A 216 916 161 HOH HOH . 
F 5 HOH A 217 917 89 HOH HOH . 
F 5 HOH A 218 918 133 HOH HOH . 
F 5 HOH A 219 919 185 HOH HOH . 
F 5 HOH A 220 920 141 HOH HOH . 
F 5 HOH A 221 921 76 HOH HOH . 
F 5 HOH A 222 922 125 HOH HOH . 
F 5 HOH A 223 923 96 HOH HOH . 
F 5 HOH A 224 924 113 HOH HOH . 
F 5 HOH A 225 925 194 HOH HOH . 
F 5 HOH A 226 926 162 HOH HOH . 
F 5 HOH A 227 927 148 HOH HOH . 
F 5 HOH A 228 928 220 HOH HOH . 
F 5 HOH A 229 929 129 HOH HOH . 
F 5 HOH A 230 930 21 HOH HOH . 
F 5 HOH A 231 931 151 HOH HOH . 
F 5 HOH A 232 932 191 HOH HOH . 
F 5 HOH A 233 933 218 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -20.929 
_atom_site.Cartn_y               1.764 
_atom_site.Cartn_z               28.252 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        77 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           603 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#