data_6VPO
#
_model_server_result.job_id            Hgv9b-Y-FoeDCJGSGd_HYQ 
_model_server_result.datetime_utc      '2024-10-20 08:25:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vpo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    6VPO 
#
_exptl.entry_id    6VPO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VPO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VPO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D O1G GTP . A GTP 501 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc2 D O3G GTP . A GTP 501 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc3 D O3B GTP . A GTP 501 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc4 D O1B GTP . A GTP 501 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc5 D O3A GTP . A GTP 501 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 224 n n 
PG O2G GTP sing 225 n n 
PG O3G GTP sing 226 n n 
PG O3B GTP sing 227 n n 
O2G HOG2 GTP sing 228 n n 
O3G HOG3 GTP sing 229 n n 
O3B PB GTP sing 230 n n 
PB O1B GTP doub 231 n n 
PB O2B GTP sing 232 n n 
PB O3A GTP sing 233 n n 
O2B HOB2 GTP sing 234 n n 
O3A PA GTP sing 235 n n 
PA O1A GTP doub 236 n n 
PA O2A GTP sing 237 n n 
PA O5' GTP sing 238 n n 
O2A HOA2 GTP sing 239 n n 
O5' C5' GTP sing 240 n n 
C5' C4' GTP sing 241 n n 
C5' H5' GTP sing 242 n n 
C5' "H5''" GTP sing 243 n n 
C4' O4' GTP sing 244 n n 
C4' C3' GTP sing 245 n n 
C4' H4' GTP sing 246 n n 
O4' C1' GTP sing 247 n n 
C3' O3' GTP sing 248 n n 
C3' C2' GTP sing 249 n n 
C3' H3' GTP sing 250 n n 
O3' HO3' GTP sing 251 n n 
C2' O2' GTP sing 252 n n 
C2' C1' GTP sing 253 n n 
C2' H2' GTP sing 254 n n 
O2' HO2' GTP sing 255 n n 
C1' N9 GTP sing 256 n n 
C1' H1' GTP sing 257 n n 
N9 C8 GTP sing 258 n y 
N9 C4 GTP sing 259 n y 
C8 N7 GTP doub 260 n y 
C8 H8 GTP sing 261 n n 
N7 C5 GTP sing 262 n y 
C5 C6 GTP sing 263 n n 
C5 C4 GTP doub 264 n y 
C6 O6 GTP doub 265 n n 
C6 N1 GTP sing 266 n n 
N1 C2 GTP sing 267 n n 
N1 HN1 GTP sing 268 n n 
C2 N2 GTP sing 269 n n 
C2 N3 GTP doub 270 n n 
N2 HN21 GTP sing 271 n n 
N2 HN22 GTP sing 272 n n 
N3 C4 GTP sing 273 n n 
#
_atom_sites.entry_id                     6VPO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GTP A 1 501 501 GTP GTP . 
E 5 MG B 1 501 502 MG MG . 
F 6 GDP B 1 502 501 GDP GDP . 
G 7 ANP C 1 501 501 ANP ANP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . D 4 229.24 376.826 206.018 1 179.09 ? PG GTP 501 A 1 
HETATM 2 O O1G GTP . . . D 4 228.985 376.046 207.284 1 179.09 ? O1G GTP 501 A 1 
HETATM 3 O O2G GTP . . . D 4 229.884 378.149 206.343 1 179.09 ? O2G GTP 501 A 1 
HETATM 4 O O3G GTP . . . D 4 227.938 377.053 205.288 1 179.09 ? O3G GTP 501 A 1 
HETATM 5 O O3B GTP . . . D 4 230.231 375.959 205.1 1 179.09 ? O3B GTP 501 A 1 
HETATM 6 P PB GTP . . . D 4 229.861 374.447 204.706 1 179.09 ? PB GTP 501 A 1 
HETATM 7 O O1B GTP . . . D 4 229.802 373.594 205.947 1 179.09 ? O1B GTP 501 A 1 
HETATM 8 O O2B GTP . . . D 4 230.869 373.933 203.712 1 179.09 ? O2B GTP 501 A 1 
HETATM 9 O O3A GTP . . . D 4 228.403 374.577 204.046 1 179.09 ? O3A GTP 501 A 1 
HETATM 10 P PA GTP . . . D 4 228.343 375.27 202.602 1 179.09 ? PA GTP 501 A 1 
HETATM 11 O O1A GTP . . . D 4 229.142 374.413 201.649 1 179.09 ? O1A GTP 501 A 1 
HETATM 12 O O2A GTP . . . D 4 228.917 376.664 202.675 1 179.09 ? O2A GTP 501 A 1 
HETATM 13 O O5' GTP . . . D 4 226.805 375.266 202.118 1 179.09 ? O5' GTP 501 A 1 
HETATM 14 C C5' GTP . . . D 4 225.698 375.108 202.975 1 179.09 ? C5' GTP 501 A 1 
HETATM 15 C C4' GTP . . . D 4 224.502 374.765 202.089 1 179.09 ? C4' GTP 501 A 1 
HETATM 16 O O4' GTP . . . D 4 224.918 373.932 201.028 1 179.09 ? O4' GTP 501 A 1 
HETATM 17 C C3' GTP . . . D 4 223.392 374.008 202.795 1 179.09 ? C3' GTP 501 A 1 
HETATM 18 O O3' GTP . . . D 4 222.384 374.887 203.228 1 179.09 ? O3' GTP 501 A 1 
HETATM 19 C C2' GTP . . . D 4 222.833 373.094 201.724 1 179.09 ? C2' GTP 501 A 1 
HETATM 20 O O2' GTP . . . D 4 221.598 373.582 201.26 1 179.09 ? O2' GTP 501 A 1 
HETATM 21 C C1' GTP . . . D 4 223.853 373.111 200.598 1 179.09 ? C1' GTP 501 A 1 
HETATM 22 N N9 GTP . . . D 4 224.344 371.744 200.371 1 179.09 ? N9 GTP 501 A 1 
HETATM 23 C C8 GTP . . . D 4 225.489 371.198 200.884 1 179.09 ? C8 GTP 501 A 1 
HETATM 24 N N7 GTP . . . D 4 225.599 369.926 200.441 1 179.09 ? N7 GTP 501 A 1 
HETATM 25 C C5 GTP . . . D 4 224.547 369.656 199.644 1 179.09 ? C5 GTP 501 A 1 
HETATM 26 C C6 GTP . . . D 4 224.182 368.519 198.944 1 179.09 ? C6 GTP 501 A 1 
HETATM 27 O O6 GTP . . . D 4 224.886 367.514 198.996 1 179.09 ? O6 GTP 501 A 1 
HETATM 28 N N1 GTP . . . D 4 223.029 368.527 198.196 1 179.09 ? N1 GTP 501 A 1 
HETATM 29 C C2 GTP . . . D 4 222.251 369.664 198.148 1 179.09 ? C2 GTP 501 A 1 
HETATM 30 N N2 GTP . . . D 4 221.136 369.67 197.426 1 179.09 ? N2 GTP 501 A 1 
HETATM 31 N N3 GTP . . . D 4 222.618 370.791 198.851 1 179.09 ? N3 GTP 501 A 1 
HETATM 32 C C4 GTP . . . D 4 223.75 370.789 199.589 1 179.09 ? C4 GTP 501 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#