data_6VQY
#
_model_server_result.job_id            xBgzRYaa5VSEJoDzJ8WNhw 
_model_server_result.datetime_utc      '2024-10-19 16:46:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vqy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":301}' 
#
_entry.id    6VQY 
#
_exptl.entry_id    6VQY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.209 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ARGININE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.38 
_cell.angle_gamma         90 
_cell.entry_id            6VQY 
_cell.length_a            45.35 
_cell.length_b            129.86 
_cell.length_c            90.264 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VQY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,L,M,Q 1 1 
C,D,E,I,J,K,N,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 C SG CYS 101 C CYS 101 1_555 C SG CYS 164 C CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf5 C SG CYS 203 C CYS 203 1_555 C SG CYS 259 C CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 D SG CYS 25 D CYS 25 1_555 D SG CYS 80 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
#
_chem_comp.formula           'C6 H15 N4 O2 1' 
_chem_comp.formula_weight    175.209 
_chem_comp.id                ARG 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              ARGININE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ARG sing 13 n n 
N H ARG sing 14 n n 
N H2 ARG sing 15 n n 
CA C ARG sing 16 n n 
CA CB ARG sing 17 n n 
CA HA ARG sing 18 n n 
C O ARG doub 19 n n 
C OXT ARG sing 20 n n 
CB CG ARG sing 21 n n 
CB HB2 ARG sing 22 n n 
CB HB3 ARG sing 23 n n 
CG CD ARG sing 24 n n 
CG HG2 ARG sing 25 n n 
CG HG3 ARG sing 26 n n 
CD NE ARG sing 27 n n 
CD HD2 ARG sing 28 n n 
CD HD3 ARG sing 29 n n 
NE CZ ARG sing 30 n n 
NE HE ARG sing 31 n n 
CZ NH1 ARG sing 32 n n 
CZ NH2 ARG doub 33 n n 
NH1 HH11 ARG sing 34 n n 
NH1 HH12 ARG sing 35 n n 
NH2 HH21 ARG sing 36 n n 
NH2 HH22 ARG sing 37 n n 
OXT HXT ARG sing 38 n n 
#
_atom_sites.entry_id                     6VQY 
_atom_sites.fract_transf_matrix[1][1]    0.022051 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005653 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007701 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011437 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 ARG A 1 301 1 ARG ARG . 
H 5 GOL A 1 302 1 GOL GOL . 
I 4 ARG C 1 301 1 ARG ARG . 
J 4 ARG C 1 302 1 ARG ARG . 
K 5 GOL C 1 303 1 GOL GOL . 
L 6 HOH A 1 401 64 HOH HOH . 
L 6 HOH A 2 402 132 HOH HOH . 
L 6 HOH A 3 403 67 HOH HOH . 
L 6 HOH A 4 404 60 HOH HOH . 
L 6 HOH A 5 405 1 HOH HOH . 
L 6 HOH A 6 406 40 HOH HOH . 
L 6 HOH A 7 407 84 HOH HOH . 
L 6 HOH A 8 408 36 HOH HOH . 
L 6 HOH A 9 409 27 HOH HOH . 
L 6 HOH A 10 410 117 HOH HOH . 
L 6 HOH A 11 411 80 HOH HOH . 
L 6 HOH A 12 412 22 HOH HOH . 
L 6 HOH A 13 413 62 HOH HOH . 
L 6 HOH A 14 414 41 HOH HOH . 
L 6 HOH A 15 415 90 HOH HOH . 
L 6 HOH A 16 416 12 HOH HOH . 
L 6 HOH A 17 417 14 HOH HOH . 
L 6 HOH A 18 418 9 HOH HOH . 
L 6 HOH A 19 419 87 HOH HOH . 
L 6 HOH A 20 420 53 HOH HOH . 
L 6 HOH A 21 421 70 HOH HOH . 
L 6 HOH A 22 422 103 HOH HOH . 
L 6 HOH A 23 423 19 HOH HOH . 
L 6 HOH A 24 424 20 HOH HOH . 
L 6 HOH A 25 425 86 HOH HOH . 
L 6 HOH A 26 426 52 HOH HOH . 
L 6 HOH A 27 427 32 HOH HOH . 
L 6 HOH A 28 428 85 HOH HOH . 
L 6 HOH A 29 429 6 HOH HOH . 
L 6 HOH A 30 430 94 HOH HOH . 
L 6 HOH A 31 431 3 HOH HOH . 
L 6 HOH A 32 432 48 HOH HOH . 
L 6 HOH A 33 433 24 HOH HOH . 
L 6 HOH A 34 434 113 HOH HOH . 
L 6 HOH A 35 435 114 HOH HOH . 
L 6 HOH A 36 436 115 HOH HOH . 
L 6 HOH A 37 437 72 HOH HOH . 
L 6 HOH A 38 438 111 HOH HOH . 
L 6 HOH A 39 439 121 HOH HOH . 
L 6 HOH A 40 440 25 HOH HOH . 
M 6 HOH B 1 101 79 HOH HOH . 
M 6 HOH B 2 102 75 HOH HOH . 
M 6 HOH B 3 103 11 HOH HOH . 
M 6 HOH B 4 104 96 HOH HOH . 
M 6 HOH B 5 105 18 HOH HOH . 
M 6 HOH B 6 106 23 HOH HOH . 
M 6 HOH B 7 107 97 HOH HOH . 
M 6 HOH B 8 108 33 HOH HOH . 
M 6 HOH B 9 109 100 HOH HOH . 
M 6 HOH B 10 110 37 HOH HOH . 
M 6 HOH B 11 111 119 HOH HOH . 
M 6 HOH B 12 112 92 HOH HOH . 
M 6 HOH B 13 113 101 HOH HOH . 
M 6 HOH B 14 114 112 HOH HOH . 
M 6 HOH B 15 115 118 HOH HOH . 
M 6 HOH B 16 116 42 HOH HOH . 
M 6 HOH B 17 117 47 HOH HOH . 
M 6 HOH B 18 118 109 HOH HOH . 
M 6 HOH B 19 119 116 HOH HOH . 
M 6 HOH B 20 120 108 HOH HOH . 
N 6 HOH C 1 401 10 HOH HOH . 
N 6 HOH C 2 402 49 HOH HOH . 
N 6 HOH C 3 403 55 HOH HOH . 
N 6 HOH C 4 404 56 HOH HOH . 
N 6 HOH C 5 405 45 HOH HOH . 
N 6 HOH C 6 406 81 HOH HOH . 
N 6 HOH C 7 407 54 HOH HOH . 
N 6 HOH C 8 408 4 HOH HOH . 
N 6 HOH C 9 409 31 HOH HOH . 
N 6 HOH C 10 410 44 HOH HOH . 
N 6 HOH C 11 411 102 HOH HOH . 
N 6 HOH C 12 412 43 HOH HOH . 
N 6 HOH C 13 413 77 HOH HOH . 
N 6 HOH C 14 414 38 HOH HOH . 
N 6 HOH C 15 415 8 HOH HOH . 
N 6 HOH C 16 416 39 HOH HOH . 
N 6 HOH C 17 417 13 HOH HOH . 
N 6 HOH C 18 418 68 HOH HOH . 
N 6 HOH C 19 419 35 HOH HOH . 
N 6 HOH C 20 420 95 HOH HOH . 
N 6 HOH C 21 421 5 HOH HOH . 
N 6 HOH C 22 422 61 HOH HOH . 
N 6 HOH C 23 423 131 HOH HOH . 
N 6 HOH C 24 424 124 HOH HOH . 
N 6 HOH C 25 425 106 HOH HOH . 
N 6 HOH C 26 426 34 HOH HOH . 
N 6 HOH C 27 427 7 HOH HOH . 
N 6 HOH C 28 428 98 HOH HOH . 
N 6 HOH C 29 429 107 HOH HOH . 
N 6 HOH C 30 430 104 HOH HOH . 
N 6 HOH C 31 431 123 HOH HOH . 
N 6 HOH C 32 432 125 HOH HOH . 
N 6 HOH C 33 433 122 HOH HOH . 
O 6 HOH D 1 101 2 HOH HOH . 
O 6 HOH D 2 102 17 HOH HOH . 
O 6 HOH D 3 103 126 HOH HOH . 
O 6 HOH D 4 104 130 HOH HOH . 
O 6 HOH D 5 105 46 HOH HOH . 
O 6 HOH D 6 106 88 HOH HOH . 
O 6 HOH D 7 107 26 HOH HOH . 
O 6 HOH D 8 108 78 HOH HOH . 
O 6 HOH D 9 109 128 HOH HOH . 
O 6 HOH D 10 110 63 HOH HOH . 
O 6 HOH D 11 111 69 HOH HOH . 
O 6 HOH D 12 112 29 HOH HOH . 
O 6 HOH D 13 113 73 HOH HOH . 
O 6 HOH D 14 114 129 HOH HOH . 
O 6 HOH D 15 115 30 HOH HOH . 
O 6 HOH D 16 116 105 HOH HOH . 
O 6 HOH D 17 117 15 HOH HOH . 
O 6 HOH D 18 118 127 HOH HOH . 
O 6 HOH D 19 119 16 HOH HOH . 
P 6 HOH G 1 101 83 HOH HOH . 
P 6 HOH G 2 102 82 HOH HOH . 
Q 6 HOH F 1 101 21 HOH HOH . 
Q 6 HOH F 2 102 28 HOH HOH . 
Q 6 HOH F 3 103 110 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ARG . . . G 4 -12.089 15.263 73.163 1 31.36 ? N ARG 301 A 1 
HETATM 2 C CA ARG . . . G 4 -11.246 15.714 74.262 1 30.78 ? CA ARG 301 A 1 
HETATM 3 C C ARG . . . G 4 -10.782 17.15 74.054 1 32.59 ? C ARG 301 A 1 
HETATM 4 O O ARG . . . G 4 -10.293 17.792 74.983 1 33.8 ? O ARG 301 A 1 
HETATM 5 C CB ARG . . . G 4 -10.037 14.79 74.417 1 26.45 ? CB ARG 301 A 1 
HETATM 6 C CG ARG . . . G 4 -9.471 14.753 75.822 1 25.48 ? CG ARG 301 A 1 
HETATM 7 C CD ARG . . . G 4 -10.352 13.949 76.76 1 26.77 ? CD ARG 301 A 1 
HETATM 8 N NE ARG . . . G 4 -9.608 13.504 77.932 1 28.32 ? NE ARG 301 A 1 
HETATM 9 C CZ ARG . . . G 4 -9.061 12.299 78.051 1 27.98 ? CZ ARG 301 A 1 
HETATM 10 N NH1 ARG . . . G 4 -9.179 11.417 77.068 1 26.26 ? NH1 ARG 301 A 1 
HETATM 11 N NH2 ARG . . . G 4 -8.397 11.976 79.152 1 31.42 ? NH2 ARG 301 A 1 
#
_model_server_stats.io_time_ms              133 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           11 
#