data_6VR6
#
_model_server_result.job_id            ZBOkeXvR1ZucG7P3Fw28yA 
_model_server_result.datetime_utc      '2025-07-10 05:06:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vr6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1001}' 
#
_entry.id    6VR6 
#
_exptl.entry_id    6VR6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         89.37 
_cell.angle_beta          84.04 
_cell.angle_gamma         73.87 
_cell.entry_id            6VR6 
_cell.length_a            82.785 
_cell.length_b            90.297 
_cell.length_c            145.236 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VR6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J 1 1 
C,D,K,L 1 2 
E,F,M,N 2 1 
G,H,O,P 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 82.785 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 235 n n 
PA O2A NAD sing 236 n n 
PA O5B NAD sing 237 n n 
PA O3 NAD sing 238 n n 
O2A HOA2 NAD sing 239 n n 
O5B C5B NAD sing 240 n n 
C5B C4B NAD sing 241 n n 
C5B H51A NAD sing 242 n n 
C5B H52A NAD sing 243 n n 
C4B O4B NAD sing 244 n n 
C4B C3B NAD sing 245 n n 
C4B H4B NAD sing 246 n n 
O4B C1B NAD sing 247 n n 
C3B O3B NAD sing 248 n n 
C3B C2B NAD sing 249 n n 
C3B H3B NAD sing 250 n n 
O3B HO3A NAD sing 251 n n 
C2B O2B NAD sing 252 n n 
C2B C1B NAD sing 253 n n 
C2B H2B NAD sing 254 n n 
O2B HO2A NAD sing 255 n n 
C1B N9A NAD sing 256 n n 
C1B H1B NAD sing 257 n n 
N9A C8A NAD sing 258 n y 
N9A C4A NAD sing 259 n y 
C8A N7A NAD doub 260 n y 
C8A H8A NAD sing 261 n n 
N7A C5A NAD sing 262 n y 
C5A C6A NAD sing 263 n y 
C5A C4A NAD doub 264 n y 
C6A N6A NAD sing 265 n n 
C6A N1A NAD doub 266 n y 
N6A H61A NAD sing 267 n n 
N6A H62A NAD sing 268 n n 
N1A C2A NAD sing 269 n y 
C2A N3A NAD doub 270 n y 
C2A H2A NAD sing 271 n n 
N3A C4A NAD sing 272 n y 
O3 PN NAD sing 273 n n 
PN O1N NAD doub 274 n n 
PN O2N NAD sing 275 n n 
PN O5D NAD sing 276 n n 
O5D C5D NAD sing 277 n n 
C5D C4D NAD sing 278 n n 
C5D H51N NAD sing 279 n n 
C5D H52N NAD sing 280 n n 
C4D O4D NAD sing 281 n n 
C4D C3D NAD sing 282 n n 
C4D H4D NAD sing 283 n n 
O4D C1D NAD sing 284 n n 
C3D O3D NAD sing 285 n n 
C3D C2D NAD sing 286 n n 
C3D H3D NAD sing 287 n n 
O3D HO3N NAD sing 288 n n 
C2D O2D NAD sing 289 n n 
C2D C1D NAD sing 290 n n 
C2D H2D NAD sing 291 n n 
O2D HO2N NAD sing 292 n n 
C1D N1N NAD sing 293 n n 
C1D H1D NAD sing 294 n n 
N1N C2N NAD sing 295 n y 
N1N C6N NAD doub 296 n y 
C2N C3N NAD doub 297 n y 
C2N H2N NAD sing 298 n n 
C3N C7N NAD sing 299 n n 
C3N C4N NAD sing 300 n y 
C7N O7N NAD doub 301 n n 
C7N N7N NAD sing 302 n n 
N7N H71N NAD sing 303 n n 
N7N H72N NAD sing 304 n n 
C4N C5N NAD doub 305 n y 
C4N H4N NAD sing 306 n n 
C5N C6N NAD sing 307 n y 
C5N H5N NAD sing 308 n n 
C6N H6N NAD sing 309 n n 
#
_atom_sites.entry_id                     6VR6 
_atom_sites.fract_transf_matrix[1][1]    0.012079 
_atom_sites.fract_transf_matrix[1][2]    -0.003494 
_atom_sites.fract_transf_matrix[1][3]    -0.001326 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011529 
_atom_sites.fract_transf_matrix[2][3]    0.000215 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006924 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 NAD A 1 501 1005 NAD NAD . 
J 2 NAD B 1 501 1006 NAD NAD . 
K 2 NAD C 1 501 1007 NAD NAD . 
L 2 NAD D 1 501 1008 NAD NAD . 
M 2 NAD E 1 1001 1001 NAD NAD . 
N 2 NAD F 1 501 1002 NAD NAD . 
O 2 NAD G 1 501 1003 NAD NAD . 
P 2 NAD H 1 501 1004 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . M 2 13.769 -2.113 2.935 1 44.13 ? PA NAD 1001 E 1 
HETATM 2 O O1A NAD . . . M 2 15.216 -1.733 2.825 1 41.05 ? O1A NAD 1001 E 1 
HETATM 3 O O2A NAD . . . M 2 13.139 -3.372 3.433 1 43.83 -1 O2A NAD 1001 E 1 
HETATM 4 O O5B NAD . . . M 2 13.328 -1.018 4.214 1 42.08 ? O5B NAD 1001 E 1 
HETATM 5 C C5B NAD . . . M 2 12.613 -1.774 5.119 1 43.24 ? C5B NAD 1001 E 1 
HETATM 6 C C4B NAD . . . M 2 12.22 -0.987 6.361 1 35.49 ? C4B NAD 1001 E 1 
HETATM 7 O O4B NAD . . . M 2 12.678 -1.72 7.491 1 35.01 ? O4B NAD 1001 E 1 
HETATM 8 C C3B NAD . . . M 2 12.93 0.374 6.353 1 27.15 ? C3B NAD 1001 E 1 
HETATM 9 O O3B NAD . . . M 2 12.126 1.2 7.134 1 31.95 ? O3B NAD 1001 E 1 
HETATM 10 C C2B NAD . . . M 2 14.259 0.043 7.034 1 23.48 ? C2B NAD 1001 E 1 
HETATM 11 O O2B NAD . . . M 2 14.74 1.104 7.8 1 30.17 ? O2B NAD 1001 E 1 
HETATM 12 C C1B NAD . . . M 2 13.839 -1.097 8.022 1 31.36 ? C1B NAD 1001 E 1 
HETATM 13 N N9A NAD . . . M 2 14.866 -2.132 8.054 1 44.68 ? N9A NAD 1001 E 1 
HETATM 14 C C8A NAD . . . M 2 15.851 -2.451 7.104 1 49.67 ? C8A NAD 1001 E 1 
HETATM 15 N N7A NAD . . . M 2 16.62 -3.468 7.485 1 52.77 ? N7A NAD 1001 E 1 
HETATM 16 C C5A NAD . . . M 2 16.117 -3.835 8.747 1 46.64 ? C5A NAD 1001 E 1 
HETATM 17 C C6A NAD . . . M 2 16.493 -4.839 9.674 1 50.71 ? C6A NAD 1001 E 1 
HETATM 18 N N6A NAD . . . M 2 17.539 -5.67 9.386 1 52.5 ? N6A NAD 1001 E 1 
HETATM 19 N N1A NAD . . . M 2 15.813 -4.977 10.855 1 51.79 ? N1A NAD 1001 E 1 
HETATM 20 C C2A NAD . . . M 2 14.779 -4.11 11.071 1 46.56 ? C2A NAD 1001 E 1 
HETATM 21 N N3A NAD . . . M 2 14.311 -3.115 10.293 1 36.4 ? N3A NAD 1001 E 1 
HETATM 22 C C4A NAD . . . M 2 15.019 -3.01 9.118 1 37.76 ? C4A NAD 1001 E 1 
HETATM 23 O O3 NAD . . . M 2 13.223 -1.535 1.518 1 54.86 ? O3 NAD 1001 E 1 
HETATM 24 P PN NAD . . . M 2 13.945 -0.258 0.885 1 50.06 ? PN NAD 1001 E 1 
HETATM 25 O O1N NAD . . . M 2 13.745 -0.48 -0.872 1 36.94 ? O1N NAD 1001 E 1 
HETATM 26 O O2N NAD . . . M 2 12.867 0.756 1.044 1 52.32 -1 O2N NAD 1001 E 1 
HETATM 27 O O5D NAD . . . M 2 15.443 -0.081 0.89 1 49.73 ? O5D NAD 1001 E 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#