data_6VR6 # _model_server_result.job_id IwAEaDTFzf5320dLgoK2wQ _model_server_result.datetime_utc '2024-12-09 04:20:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vr6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":501}' # _entry.id 6VR6 # _exptl.entry_id 6VR6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.37 _cell.angle_beta 84.04 _cell.angle_gamma 73.87 _cell.entry_id 6VR6 _cell.length_a 82.785 _cell.length_b 90.297 _cell.length_c 145.236 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VR6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J 1 1 C,D,K,L 1 2 E,F,M,N 2 1 G,H,O,P 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 82.785 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 6VR6 _atom_sites.fract_transf_matrix[1][1] 0.012079 _atom_sites.fract_transf_matrix[1][2] -0.003494 _atom_sites.fract_transf_matrix[1][3] -0.001326 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011529 _atom_sites.fract_transf_matrix[2][3] 0.000215 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAD A 1 501 1005 NAD NAD . J 2 NAD B 1 501 1006 NAD NAD . K 2 NAD C 1 501 1007 NAD NAD . L 2 NAD D 1 501 1008 NAD NAD . M 2 NAD E 1 1001 1001 NAD NAD . N 2 NAD F 1 501 1002 NAD NAD . O 2 NAD G 1 501 1003 NAD NAD . P 2 NAD H 1 501 1004 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . N 2 9.646 -30.978 20.721 1 43.3 ? PA NAD 501 F 1 HETATM 2 O O1A NAD . . . N 2 8.985 -29.711 20.284 1 52.48 -1 O1A NAD 501 F 1 HETATM 3 O O2A NAD . . . N 2 11.1 -31.304 20.889 1 48.28 ? O2A NAD 501 F 1 HETATM 4 O O5B NAD . . . N 2 9.335 -31.999 19.346 1 32.83 ? O5B NAD 501 F 1 HETATM 5 C C5B NAD . . . N 2 7.962 -32.04 19.178 1 30.25 ? C5B NAD 501 F 1 HETATM 6 C C4B NAD . . . N 2 7.597 -32.223 17.709 1 31.3 ? C4B NAD 501 F 1 HETATM 7 O O4B NAD . . . N 2 8.443 -31.39 16.917 1 34.01 ? O4B NAD 501 F 1 HETATM 8 C C3B NAD . . . N 2 7.869 -33.702 17.339 1 30.35 ? C3B NAD 501 F 1 HETATM 9 O O3B NAD . . . N 2 6.878 -34.027 16.418 1 27.67 ? O3B NAD 501 F 1 HETATM 10 C C2B NAD . . . N 2 9.262 -33.618 16.705 1 30.53 ? C2B NAD 501 F 1 HETATM 11 O O2B NAD . . . N 2 9.449 -34.572 15.71 1 37.66 ? O2B NAD 501 F 1 HETATM 12 C C1B NAD . . . N 2 9.176 -32.215 16.017 1 35.03 ? C1B NAD 501 F 1 HETATM 13 N N9A NAD . . . N 2 10.494 -31.596 15.901 1 27.8 ? N9A NAD 501 F 1 HETATM 14 C C8A NAD . . . N 2 11.586 -31.603 16.79 1 29.78 ? C8A NAD 501 F 1 HETATM 15 N N7A NAD . . . N 2 12.628 -30.91 16.33 1 28.85 ? N7A NAD 501 F 1 HETATM 16 C C5A NAD . . . N 2 12.198 -30.421 15.08 1 32.33 ? C5A NAD 501 F 1 HETATM 17 C C6A NAD . . . N 2 12.828 -29.619 14.089 1 38.37 ? C6A NAD 501 F 1 HETATM 18 N N6A NAD . . . N 2 14.103 -29.178 14.283 1 46.44 ? N6A NAD 501 F 1 HETATM 19 N N1A NAD . . . N 2 12.161 -29.286 12.939 1 40.28 ? N1A NAD 501 F 1 HETATM 20 C C2A NAD . . . N 2 10.882 -29.762 12.814 1 41.46 ? C2A NAD 501 F 1 HETATM 21 N N3A NAD . . . N 2 10.157 -30.528 13.658 1 41.92 ? N3A NAD 501 F 1 HETATM 22 C C4A NAD . . . N 2 10.864 -30.841 14.8 1 32.48 ? C4A NAD 501 F 1 HETATM 23 O O3 NAD . . . N 2 9.073 -31.681 22.066 1 53.02 ? O3 NAD 501 F 1 HETATM 24 P PN NAD . . . N 2 9.693 -33.085 22.519 1 43.5 ? PN NAD 501 F 1 HETATM 25 O O1N NAD . . . N 2 11.123 -33.485 22.246 1 45.02 ? O1N NAD 501 F 1 HETATM 26 O O2N NAD . . . N 2 8.455 -33.908 22.492 1 37.11 -1 O2N NAD 501 F 1 HETATM 27 O O5D NAD . . . N 2 9.814 -32.963 24.295 1 29.8 ? O5D NAD 501 F 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 45 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #