data_6VRH # _model_server_result.job_id IbbaZB1Wj_xLgC0rh9ea3A _model_server_result.datetime_utc '2024-11-14 19:16:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vrh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":702}' # _entry.id 6VRH # _exptl.entry_id 6VRH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 329.365 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Paroxetine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VRH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VRH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 200 A CYS 200 1_555 A SG CYS 209 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 23 C CYS 43 1_555 B SG CYS 88 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 C SG CYS 22 B CYS 41 1_555 C SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 208 A ASN 208 1_555 D C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 217 A ASN 217 1_555 G C1 NAG . A NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C19 H20 F N O3' _chem_comp.formula_weight 329.365 _chem_comp.id 8PR _chem_comp.mon_nstd_flag . _chem_comp.name Paroxetine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3S,4R)-3-[(1,3-benzodioxol-5-yloxy)methyl]-4-(4-fluorophenyl)piperidine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FAA CAR 8PR sing 1 n n CAR CAB 8PR doub 2 n y CAB CAE 8PR sing 3 n y CAB HAB 8PR sing 4 n n CAR CAC 8PR sing 5 n y CAC CAF 8PR doub 6 n y CAC HAC 8PR sing 7 n n CAS CAD 8PR doub 8 n y CAD CAG 8PR sing 9 n y CAD HAD 8PR sing 10 n n CAE CAT 8PR doub 11 n y CAE HAE 8PR sing 12 n n CAF CAT 8PR sing 13 n y CAF HAF 8PR sing 14 n n CAU CAG 8PR doub 15 n y CAG HAG 8PR sing 16 n n CAH CAS 8PR sing 17 n y CAH CAV 8PR doub 18 n y CAH HAH 8PR sing 19 n n CAJ CAI 8PR sing 20 n n CAI NAN 8PR sing 21 n n CAI HAI 8PR sing 22 n n CAI HAIA 8PR sing 23 n n CAJ CAX 8PR sing 24 n n CAJ HAJ 8PR sing 25 n n CAJ HAJA 8PR sing 26 n n CAW CAK 8PR sing 27 n n NAN CAK 8PR sing 28 n n CAK HAK 8PR sing 29 n n CAK HAKA 8PR sing 30 n n OAQ CAL 8PR sing 31 n n OAP CAL 8PR sing 32 n n CAL HAL 8PR sing 33 n n CAL HALA 8PR sing 34 n n CAW CAM 8PR sing 35 n n CAM OAO 8PR sing 36 n n CAM HAM 8PR sing 37 n n CAM HAMA 8PR sing 38 n n NAN HNAN 8PR sing 39 n n OAO CAS 8PR sing 40 n n CAU OAP 8PR sing 41 n n CAV OAQ 8PR sing 42 n n CAT CAX 8PR sing 43 n n CAV CAU 8PR sing 44 n y CAX CAW 8PR sing 45 n n CAW HAW 8PR sing 46 n n CAX HAX 8PR sing 47 n n # _atom_sites.entry_id 6VRH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 701 701 NAG NAG . E 5 8PR A 1 702 705 8PR 8PR . F 6 CL A 1 703 706 CL CL . G 4 NAG A 1 704 708 NAG NAG . H 7 LMT A 1 705 801 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F FAA 8PR . . . E 5 132.777 120.439 125.882 1 90.23 ? FAA 8PR 702 A 1 HETATM 2 C CAB 8PR . . . E 5 134.874 121.365 125.032 1 90.23 ? CAB 8PR 702 A 1 HETATM 3 C CAC 8PR . . . E 5 132.975 122.716 125.604 1 90.23 ? CAC 8PR 702 A 1 HETATM 4 C CAD 8PR . . . E 5 134.729 124.852 119.391 1 90.23 ? CAD 8PR 702 A 1 HETATM 5 C CAE 8PR . . . E 5 135.575 122.503 124.673 1 90.23 ? CAE 8PR 702 A 1 HETATM 6 C CAF 8PR . . . E 5 133.675 123.853 125.246 1 90.23 ? CAF 8PR 702 A 1 HETATM 7 C CAG 8PR . . . E 5 134.468 124.266 118.164 1 90.23 ? CAG 8PR 702 A 1 HETATM 8 C CAH 8PR . . . E 5 135.575 122.752 120.212 1 90.23 ? CAH 8PR 702 A 1 HETATM 9 C CAI 8PR . . . E 5 137.529 126.628 125.224 1 90.23 ? CAI 8PR 702 A 1 HETATM 10 C CAJ 8PR . . . E 5 136.688 125.385 125.526 1 90.23 ? CAJ 8PR 702 A 1 HETATM 11 C CAK 8PR . . . E 5 136.059 127.168 123.295 1 90.23 ? CAK 8PR 702 A 1 HETATM 12 C CAL 8PR . . . E 5 135.201 120.837 117.115 1 90.23 ? CAL 8PR 702 A 1 HETATM 13 C CAM 8PR . . . E 5 134.665 125.37 122.257 1 90.23 ? CAM 8PR 702 A 1 HETATM 14 N NAN 8PR . . . E 5 136.728 127.694 124.528 1 90.23 ? NAN 8PR 702 A 1 HETATM 15 O OAO 8PR . . . E 5 135.61 124.506 121.7 1 90.23 ? OAO 8PR 702 A 1 HETATM 16 O OAP 8PR . . . E 5 134.602 122.075 116.83 1 90.23 ? OAP 8PR 702 A 1 HETATM 17 O OAQ 8PR . . . E 5 135.5 120.848 118.487 1 90.23 ? OAQ 8PR 702 A 1 HETATM 18 C CAR 8PR . . . E 5 133.575 121.475 125.497 1 90.23 ? CAR 8PR 702 A 1 HETATM 19 C CAS 8PR . . . E 5 135.282 124.091 120.408 1 90.23 ? CAS 8PR 702 A 1 HETATM 20 C CAT 8PR . . . E 5 134.973 123.745 124.779 1 90.23 ? CAT 8PR 702 A 1 HETATM 21 C CAU 8PR . . . E 5 134.762 122.912 117.957 1 90.23 ? CAU 8PR 702 A 1 HETATM 22 C CAV 8PR . . . E 5 135.31 122.163 118.969 1 90.23 ? CAV 8PR 702 A 1 HETATM 23 C CAW 8PR . . . E 5 135.2 125.936 123.597 1 90.23 ? CAW 8PR 702 A 1 HETATM 24 C CAX 8PR . . . E 5 135.976 124.86 124.313 1 90.23 ? CAX 8PR 702 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #