data_6VRH # _model_server_result.job_id AGwHtcrshzbPP2h7DFphYA _model_server_result.datetime_utc '2024-11-14 19:12:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vrh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":705}' # _entry.id 6VRH # _exptl.entry_id 6VRH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VRH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VRH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 200 A CYS 200 1_555 A SG CYS 209 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 23 C CYS 43 1_555 B SG CYS 88 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 C SG CYS 22 B CYS 41 1_555 C SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 208 A ASN 208 1_555 D C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 217 A ASN 217 1_555 G C1 NAG . A NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 239 n n C1B O1B LMT sing 240 n n C1B O5B LMT sing 241 n n C1B H1B LMT sing 242 n n C2B C3B LMT sing 243 n n C2B O2B LMT sing 244 n n C2B H2B LMT sing 245 n n C3B C4B LMT sing 246 n n C3B O3B LMT sing 247 n n C3B H3B LMT sing 248 n n C4B C5B LMT sing 249 n n C4B O4' LMT sing 250 n n C4B H4B LMT sing 251 n n C5B C6B LMT sing 252 n n C5B O5B LMT sing 253 n n C5B H5B LMT sing 254 n n C6B O6B LMT sing 255 n n C6B "H6'2" LMT sing 256 n n C6B "H6'1" LMT sing 257 n n O1B C4' LMT sing 258 n n O2B H2O1 LMT sing 259 n n O3B H3O1 LMT sing 260 n n O4' H4O1 LMT sing 261 n n O6B H6B LMT sing 262 n n C1' C2' LMT sing 263 n n C1' O1' LMT sing 264 n n C1' O5' LMT sing 265 n n C1' H1' LMT sing 266 n n C2' C3' LMT sing 267 n n C2' O2' LMT sing 268 n n C2' H2' LMT sing 269 n n C3' C4' LMT sing 270 n n C3' O3' LMT sing 271 n n C3' H3' LMT sing 272 n n C4' C5' LMT sing 273 n n C4' H4' LMT sing 274 n n C5' C6' LMT sing 275 n n C5' O5' LMT sing 276 n n C5' H5' LMT sing 277 n n C6' O6' LMT sing 278 n n C6' H6D LMT sing 279 n n C6' H6E LMT sing 280 n n O1' C1 LMT sing 281 n n O2' H2O2 LMT sing 282 n n O3' H3O2 LMT sing 283 n n O6' H6' LMT sing 284 n n C1 C2 LMT sing 285 n n C1 H12 LMT sing 286 n n C1 H11 LMT sing 287 n n C2 C3 LMT sing 288 n n C2 H22 LMT sing 289 n n C2 H21 LMT sing 290 n n C3 C4 LMT sing 291 n n C3 H32 LMT sing 292 n n C3 H31 LMT sing 293 n n C4 C5 LMT sing 294 n n C4 H42 LMT sing 295 n n C4 H41 LMT sing 296 n n C5 C6 LMT sing 297 n n C5 H52 LMT sing 298 n n C5 H51 LMT sing 299 n n C6 C7 LMT sing 300 n n C6 H62 LMT sing 301 n n C6 H61 LMT sing 302 n n C7 C8 LMT sing 303 n n C7 H72 LMT sing 304 n n C7 H71 LMT sing 305 n n C8 C9 LMT sing 306 n n C8 H82 LMT sing 307 n n C8 H81 LMT sing 308 n n C9 C10 LMT sing 309 n n C9 H92 LMT sing 310 n n C9 H91 LMT sing 311 n n C10 C11 LMT sing 312 n n C10 H102 LMT sing 313 n n C10 H101 LMT sing 314 n n C11 C12 LMT sing 315 n n C11 H112 LMT sing 316 n n C11 H111 LMT sing 317 n n C12 H123 LMT sing 318 n n C12 H122 LMT sing 319 n n C12 H121 LMT sing 320 n n # _atom_sites.entry_id 6VRH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 701 701 NAG NAG . E 5 8PR A 1 702 705 8PR 8PR . F 6 CL A 1 703 706 CL CL . G 4 NAG A 1 704 708 NAG NAG . H 7 LMT A 1 705 801 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . H 7 123.528 123.783 134.118 1 117.72 ? C1B LMT 705 A 1 HETATM 2 C C2B LMT . . . H 7 124.444 124.9 133.601 1 117.72 ? C2B LMT 705 A 1 HETATM 3 C C3B LMT . . . H 7 125.61 125.116 134.581 1 117.72 ? C3B LMT 705 A 1 HETATM 4 C C4B LMT . . . H 7 125.074 125.35 136.013 1 117.72 ? C4B LMT 705 A 1 HETATM 5 C C5B LMT . . . H 7 124.112 124.198 136.351 1 117.72 ? C5B LMT 705 A 1 HETATM 6 C C6B LMT . . . H 7 123.539 124.395 137.749 1 117.72 ? C6B LMT 705 A 1 HETATM 7 O O1B LMT . . . H 7 124.252 122.601 134.13 1 117.72 ? O1B LMT 705 A 1 HETATM 8 O O2B LMT . . . H 7 124.907 124.51 132.374 1 117.72 ? O2B LMT 705 A 1 HETATM 9 O O3B LMT . . . H 7 126.445 126.119 134.163 1 117.72 ? O3B LMT 705 A 1 HETATM 10 O O4' LMT . . . H 7 126.106 125.358 136.92 1 117.72 ? O4' LMT 705 A 1 HETATM 11 O O5B LMT . . . H 7 123.078 124.073 135.404 1 117.72 ? O5B LMT 705 A 1 HETATM 12 O O6B LMT . . . H 7 122.975 123.229 138.199 1 117.72 ? O6B LMT 705 A 1 HETATM 13 C C1' LMT . . . H 7 124.328 118.781 132.603 1 117.72 ? C1' LMT 705 A 1 HETATM 14 C C2' LMT . . . H 7 124.517 119.894 131.553 1 117.72 ? C2' LMT 705 A 1 HETATM 15 C C3' LMT . . . H 7 124.779 121.263 132.235 1 117.72 ? C3' LMT 705 A 1 HETATM 16 C C4' LMT . . . H 7 123.766 121.534 133.356 1 117.72 ? C4' LMT 705 A 1 HETATM 17 C C5' LMT . . . H 7 123.786 120.274 134.239 1 117.72 ? C5' LMT 705 A 1 HETATM 18 C C6' LMT . . . H 7 123.011 120.399 135.522 1 117.72 ? C6' LMT 705 A 1 HETATM 19 O O1' LMT . . . H 7 123.894 117.634 132.006 1 117.72 ? O1' LMT 705 A 1 HETATM 20 O O2' LMT . . . H 7 125.604 119.575 130.785 1 117.72 ? O2' LMT 705 A 1 HETATM 21 O O3' LMT . . . H 7 124.729 122.269 131.318 1 117.72 ? O3' LMT 705 A 1 HETATM 22 O O5' LMT . . . H 7 123.319 119.177 133.511 1 117.72 ? O5' LMT 705 A 1 HETATM 23 O O6' LMT . . . H 7 122.671 119.123 135.881 1 117.72 ? O6' LMT 705 A 1 HETATM 24 C C1 LMT . . . H 7 123.083 116.821 132.822 1 117.72 ? C1 LMT 705 A 1 HETATM 25 C C2 LMT . . . H 7 123.475 115.417 132.484 1 117.72 ? C2 LMT 705 A 1 HETATM 26 C C3 LMT . . . H 7 123.41 115.038 131.043 1 117.72 ? C3 LMT 705 A 1 HETATM 27 C C4 LMT . . . H 7 122.976 113.599 130.979 1 117.72 ? C4 LMT 705 A 1 HETATM 28 C C5 LMT . . . H 7 123.981 112.721 131.641 1 117.72 ? C5 LMT 705 A 1 HETATM 29 C C6 LMT . . . H 7 125.174 112.485 130.779 1 117.72 ? C6 LMT 705 A 1 HETATM 30 C C7 LMT . . . H 7 125.989 111.361 131.345 1 117.72 ? C7 LMT 705 A 1 HETATM 31 C C8 LMT . . . H 7 127.003 110.944 130.338 1 117.72 ? C8 LMT 705 A 1 HETATM 32 C C9 LMT . . . H 7 127.876 109.815 130.781 1 117.72 ? C9 LMT 705 A 1 HETATM 33 C C10 LMT . . . H 7 128.456 110.193 132.115 1 117.72 ? C10 LMT 705 A 1 HETATM 34 C C11 LMT . . . H 7 129.486 109.209 132.564 1 117.72 ? C11 LMT 705 A 1 HETATM 35 C C12 LMT . . . H 7 129.947 109.492 133.954 1 117.72 ? C12 LMT 705 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 35 #