data_6VRK
#
_model_server_result.job_id            17qkWlZEj2N_VWiwR7n97w 
_model_server_result.datetime_utc      '2024-11-22 12:32:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vrk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":704}' 
#
_entry.id    6VRK 
#
_exptl.entry_id    6VRK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              390.271 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Br-paroxetine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VRK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VRK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 200 A CYS 200 1_555 A SG CYS 209 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 23 C CYS 43 1_555 B SG CYS 88 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 C SG CYS 22 B CYS 41 1_555 C SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 A ND2 ASN 208 A ASN 208 1_555 D C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 A ND2 ASN 217 A ASN 217 1_555 E C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
#
_chem_comp.formula           'C19 H20 Br N O3' 
_chem_comp.formula_weight    390.271 
_chem_comp.id                RFS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Br-paroxetine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (3S,4R)-3-{[(2H-1,3-benzodioxol-5-yl)oxy]methyl}-4-(4-bromophenyl)piperidine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O22 C23 RFS sing 387 n n 
O22 C19 RFS sing 388 n n 
C23 O24 RFS sing 389 n n 
C19 C20 RFS doub 390 n y 
C19 C18 RFS sing 391 n y 
C20 C21 RFS sing 392 n y 
O24 C18 RFS sing 393 n n 
C18 C17 RFS doub 394 n y 
C21 C16 RFS doub 395 n y 
C17 C16 RFS sing 396 n y 
C16 O15 RFS sing 397 n n 
O15 C14 RFS sing 398 n n 
C14 C05 RFS sing 399 n n 
C04 C05 RFS sing 400 n n 
C04 N03 RFS sing 401 n n 
C05 C06 RFS sing 402 n n 
N03 C02 RFS sing 403 n n 
C06 C07 RFS sing 404 n n 
C06 C01 RFS sing 405 n n 
C12 C07 RFS doub 406 n y 
C12 C11 RFS sing 407 n y 
C07 C08 RFS sing 408 n y 
C02 C01 RFS sing 409 n n 
C11 C10 RFS doub 410 n y 
C08 C09 RFS doub 411 n y 
C10 C09 RFS sing 412 n y 
C10 BR1 RFS sing 413 n n 
C17 H1 RFS sing 414 n n 
C20 H2 RFS sing 415 n n 
C21 H3 RFS sing 416 n n 
C01 H4 RFS sing 417 n n 
C01 H5 RFS sing 418 n n 
C02 H6 RFS sing 419 n n 
C02 H7 RFS sing 420 n n 
C04 H8 RFS sing 421 n n 
C04 H9 RFS sing 422 n n 
C05 H10 RFS sing 423 n n 
C06 H11 RFS sing 424 n n 
C08 H12 RFS sing 425 n n 
C09 H13 RFS sing 426 n n 
C11 H14 RFS sing 427 n n 
C12 H15 RFS sing 428 n n 
C14 H16 RFS sing 429 n n 
C14 H17 RFS sing 430 n n 
C23 H18 RFS sing 431 n n 
C23 H19 RFS sing 432 n n 
N03 H20 RFS sing 433 n n 
#
_atom_sites.entry_id                     6VRK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG A 1 701 701 NAG NAG . 
E 4 NAG A 1 702 708 NAG NAG . 
F 5 LMT A 1 703 801 LMT LMT . 
G 6 RFS A 1 704 901 RFS LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 RFS . . . G 6 134.001 121.778 126.654 1 82.03 ? C10 RFS 704 A 1 
HETATM 2 C C17 RFS . . . G 6 135.906 121.801 120.479 1 82.03 ? C17 RFS 704 A 1 
HETATM 3 C C20 RFS . . . G 6 134.786 123.137 118.264 1 82.03 ? C20 RFS 704 A 1 
HETATM 4 C C21 RFS . . . G 6 134.692 123.714 119.526 1 82.03 ? C21 RFS 704 A 1 
HETATM 5 C C01 RFS . . . G 6 137.152 125.572 125.905 1 82.03 ? C01 RFS 704 A 1 
HETATM 6 C C02 RFS . . . G 6 136.825 127.033 125.597 1 82.03 ? C02 RFS 704 A 1 
HETATM 7 C C04 RFS . . . G 6 136.603 126.613 123.183 1 82.03 ? C04 RFS 704 A 1 
HETATM 8 C C05 RFS . . . G 6 136.128 125.204 123.601 1 82.03 ? C05 RFS 704 A 1 
HETATM 9 C C06 RFS . . . G 6 136.776 124.615 124.821 1 82.03 ? C06 RFS 704 A 1 
HETATM 10 C C07 RFS . . . G 6 135.748 123.578 125.48 1 82.03 ? C07 RFS 704 A 1 
HETATM 11 C C08 RFS . . . G 6 136.24 122.571 126.409 1 82.03 ? C08 RFS 704 A 1 
HETATM 12 C C09 RFS . . . G 6 135.391 121.709 126.967 1 82.03 ? C09 RFS 704 A 1 
HETATM 13 C C11 RFS . . . G 6 133.518 122.752 125.759 1 82.03 ? C11 RFS 704 A 1 
HETATM 14 C C12 RFS . . . G 6 134.399 123.647 125.181 1 82.03 ? C12 RFS 704 A 1 
HETATM 15 C C14 RFS . . . G 6 136.434 124.257 122.415 1 82.03 ? C14 RFS 704 A 1 
HETATM 16 C C16 RFS . . . G 6 135.245 123.069 120.639 1 82.03 ? C16 RFS 704 A 1 
HETATM 17 C C18 RFS . . . G 6 135.996 121.223 119.209 1 82.03 ? C18 RFS 704 A 1 
HETATM 18 C C19 RFS . . . G 6 135.448 121.872 118.105 1 82.03 ? C19 RFS 704 A 1 
HETATM 19 C C23 RFS . . . G 6 136.097 119.812 117.465 1 82.03 ? C23 RFS 704 A 1 
HETATM 20 N N03 RFS . . . G 6 137.311 127.387 124.239 1 82.03 ? N03 RFS 704 A 1 
HETATM 21 O O15 RFS . . . G 6 135.145 123.664 121.931 1 82.03 ? O15 RFS 704 A 1 
HETATM 22 O O22 RFS . . . G 6 135.68 121.082 116.976 1 82.03 ? O22 RFS 704 A 1 
HETATM 23 O O24 RFS . . . G 6 136.573 120.023 118.774 1 82.03 ? O24 RFS 704 A 1 
HETATM 24 BR BR1 RFS . . . G 6 132.801 120.55 127.454 1 82.03 ? BR1 RFS 704 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           24 
#