data_6VRL # _model_server_result.job_id JzXrepdg48TZseTaDIe_Uw _model_server_result.datetime_utc '2024-11-04 22:37:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vrl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":704}' # _entry.id 6VRL # _exptl.entry_id 6VRL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 437.271 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description I-paroxetine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VRL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VRL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 200 A CYS 200 1_555 A SG CYS 209 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 23 C CYS 43 1_555 B SG CYS 88 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 22 B CYS 41 1_555 C SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 208 A ASN 208 1_555 D C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 217 A ASN 217 1_555 E C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C19 H20 I N O3' _chem_comp.formula_weight 437.271 _chem_comp.id RFY _chem_comp.mon_nstd_flag . _chem_comp.name I-paroxetine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3S,4R)-3-{[(2H-1,3-benzodioxol-5-yl)oxy]methyl}-4-(4-iodophenyl)piperidine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C23 RFY sing 387 n n O22 C19 RFY sing 388 n n C23 O24 RFY sing 389 n n C19 C20 RFY doub 390 n y C19 C18 RFY sing 391 n y O24 C18 RFY sing 392 n n C20 C21 RFY sing 393 n y C18 C17 RFY doub 394 n y C21 C16 RFY doub 395 n y C17 C16 RFY sing 396 n y C16 O15 RFY sing 397 n n O15 C14 RFY sing 398 n n C14 C05 RFY sing 399 n n C04 C05 RFY sing 400 n n C04 N03 RFY sing 401 n n C05 C06 RFY sing 402 n n N03 C02 RFY sing 403 n n C06 C07 RFY sing 404 n n C06 C01 RFY sing 405 n n C08 C07 RFY doub 406 n y C08 C09 RFY sing 407 n y C07 C12 RFY sing 408 n y C09 C10 RFY doub 409 n y C12 C11 RFY doub 410 n y C10 C11 RFY sing 411 n y C10 I13 RFY sing 412 n n C02 C01 RFY sing 413 n n C17 H1 RFY sing 414 n n C20 H2 RFY sing 415 n n C21 H3 RFY sing 416 n n C01 H4 RFY sing 417 n n C01 H5 RFY sing 418 n n C02 H6 RFY sing 419 n n C02 H7 RFY sing 420 n n C04 H8 RFY sing 421 n n C04 H9 RFY sing 422 n n C05 H10 RFY sing 423 n n C06 H11 RFY sing 424 n n C08 H12 RFY sing 425 n n C09 H13 RFY sing 426 n n C11 H14 RFY sing 427 n n C12 H15 RFY sing 428 n n C14 H16 RFY sing 429 n n C14 H17 RFY sing 430 n n C23 H18 RFY sing 431 n n C23 H19 RFY sing 432 n n N03 H20 RFY sing 433 n n # _atom_sites.entry_id 6VRL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 701 701 NAG NAG . E 4 NAG A 1 702 708 NAG NAG . F 5 LMT A 1 703 801 LMT LMT . G 6 RFY A 1 704 901 RFY LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 RFY . . . G 6 133.943 121.234 125.339 1 72.7 ? C10 RFY 704 A 1 HETATM 2 C C17 RFY . . . G 6 135.67 121.96 119.95 1 72.7 ? C17 RFY 704 A 1 HETATM 3 C C20 RFY . . . G 6 134.788 124 118.274 1 72.7 ? C20 RFY 704 A 1 HETATM 4 C C21 RFY . . . G 6 134.908 124.223 119.638 1 72.7 ? C21 RFY 704 A 1 HETATM 5 C C01 RFY . . . G 6 136.213 125.692 125.737 1 72.7 ? C01 RFY 704 A 1 HETATM 6 C C02 RFY . . . G 6 136.773 127.087 125.437 1 72.7 ? C02 RFY 704 A 1 HETATM 7 C C04 RFY . . . G 6 136.602 126.683 123.014 1 72.7 ? C04 RFY 704 A 1 HETATM 8 C C05 RFY . . . G 6 135.991 125.299 123.276 1 72.7 ? C05 RFY 704 A 1 HETATM 9 C C06 RFY . . . G 6 136.391 124.735 124.599 1 72.7 ? C06 RFY 704 A 1 HETATM 10 C C07 RFY . . . G 6 135.498 123.465 124.87 1 72.7 ? C07 RFY 704 A 1 HETATM 11 C C08 RFY . . . G 6 134.119 123.566 124.827 1 72.7 ? C08 RFY 704 A 1 HETATM 12 C C09 RFY . . . G 6 133.339 122.449 125.062 1 72.7 ? C09 RFY 704 A 1 HETATM 13 C C11 RFY . . . G 6 135.322 121.133 125.38 1 72.7 ? C11 RFY 704 A 1 HETATM 14 C C12 RFY . . . G 6 136.101 122.25 125.145 1 72.7 ? C12 RFY 704 A 1 HETATM 15 C C14 RFY . . . G 6 136.494 124.328 122.172 1 72.7 ? C14 RFY 704 A 1 HETATM 16 C C16 RFY . . . G 6 135.347 123.204 120.477 1 72.7 ? C16 RFY 704 A 1 HETATM 17 C C18 RFY . . . G 6 135.545 121.731 118.556 1 72.7 ? C18 RFY 704 A 1 HETATM 18 C C19 RFY . . . G 6 135.114 122.732 117.734 1 72.7 ? C19 RFY 704 A 1 HETATM 19 C C23 RFY . . . G 6 135.815 121.037 116.43 1 72.7 ? C23 RFY 704 A 1 HETATM 20 I I13 RFY . . . G 6 132.766 119.524 125.698 1 72.7 ? I13 RFY 704 A 1 HETATM 21 N N03 RFY . . . G 6 137.488 127.13 124.128 1 72.7 ? N03 RFY 704 A 1 HETATM 22 O O15 RFY . . . G 6 135.464 123.441 121.847 1 72.7 ? O15 RFY 704 A 1 HETATM 23 O O22 RFY . . . G 6 135.085 122.234 116.41 1 72.7 ? O22 RFY 704 A 1 HETATM 24 O O24 RFY . . . G 6 135.795 120.588 117.759 1 72.7 ? O24 RFY 704 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #