data_6VRT # _model_server_result.job_id wVg26ws3qjwZEcPvjppITQ _model_server_result.datetime_utc '2024-10-18 23:27:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vrt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6VRT # _exptl.entry_id 6VRT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VRT _cell.length_a 87.802 _cell.length_b 114.408 _cell.length_c 133.702 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VRT _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 A SG CYS 148 H CYS 140 1_555 A SG CYS 204 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 224 H CYS 216 1_555 B SG CYS 214 L CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? disulf ? disulf4 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 B OD1 ASP 30 L ASP 30 1_555 D CA CA . L CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc2 B OD1 ASP 30 L ASP 30 1_555 E CA CA . L CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.095 ? metalc ? metalc3 B OD2 ASP 30 L ASP 30 1_555 E CA CA . L CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc4 B OD1 ASP 31 L ASP 31 1_555 D CA CA . L CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc5 B OD1 ASP 32 L ASP 32 1_555 D CA CA . L CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc6 B OD2 ASP 32 L ASP 32 1_555 E CA CA . L CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc7 B OD2 ASP 92 L ASP 92 1_555 E CA CA . L CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc8 D CA CA . L CA 301 1_555 G O HOH . L HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? metalc ? metalc9 D CA CA . L CA 301 1_555 G O HOH . L HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6VRT _atom_sites.fract_transf_matrix[1][1] 0.011389 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007479 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 H 1 301 1 SO4 SO4 . D 4 CA L 1 301 1 CA CA . E 4 CA L 1 302 2 CA CA . F 5 HOH H 1 401 4 HOH HOH . F 5 HOH H 2 402 1 HOH HOH . F 5 HOH H 3 403 3 HOH HOH . F 5 HOH H 4 404 2 HOH HOH . F 5 HOH H 5 405 6 HOH HOH . F 5 HOH H 6 406 17 HOH HOH . F 5 HOH H 7 407 25 HOH HOH . F 5 HOH H 8 408 13 HOH HOH . F 5 HOH H 9 409 26 HOH HOH . F 5 HOH H 10 410 9 HOH HOH . F 5 HOH H 11 411 24 HOH HOH . F 5 HOH H 12 412 21 HOH HOH . F 5 HOH H 13 413 10 HOH HOH . F 5 HOH H 14 414 16 HOH HOH . F 5 HOH H 15 415 12 HOH HOH . F 5 HOH H 16 416 14 HOH HOH . F 5 HOH H 17 417 15 HOH HOH . G 5 HOH L 1 401 20 HOH HOH . G 5 HOH L 2 402 8 HOH HOH . G 5 HOH L 3 403 18 HOH HOH . G 5 HOH L 4 404 19 HOH HOH . G 5 HOH L 5 405 27 HOH HOH . G 5 HOH L 6 406 11 HOH HOH . G 5 HOH L 7 407 7 HOH HOH . G 5 HOH L 8 408 5 HOH HOH . G 5 HOH L 9 409 22 HOH HOH . G 5 HOH L 10 410 28 HOH HOH . G 5 HOH L 11 411 23 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -19.227 _atom_site.Cartn_y -3.364 _atom_site.Cartn_z -11.283 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 89.84 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id L _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #