data_6VRX
#
_model_server_result.job_id            hAUp5yh8qjzklPbt6yVhng 
_model_server_result.datetime_utc      '2024-10-19 20:19:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vrx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":201}' 
#
_entry.id    6VRX 
#
_exptl.entry_id    6VRX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              804.018 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6VRX 
_cell.length_a            104.905 
_cell.length_b            104.905 
_cell.length_c            111.613 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VRX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    'P 32 2"' 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
PISA octameric 8 software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
B,C,D,F,G,H,J,K,L 5 1,4 
A,E,I 5 2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_544 -y,x-y-1,z-1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 52.4525 -90.850395 -37.204333 
3 'crystal symmetry operation' 4_545 y,x-1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 52.4525 -90.850395 0 
4 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -37.204333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C44 H69 N O12' 
_chem_comp.formula_weight    804.018 
_chem_comp.id                FK5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     K506 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 FK5 sing 83 n n 
C1 O1 FK5 sing 84 n n 
C1 O2 FK5 doub 85 n n 
C2 C3 FK5 sing 86 n n 
C2 N7 FK5 sing 87 n n 
C2 H2 FK5 sing 88 n n 
C3 C4 FK5 sing 89 n n 
C3 H31A FK5 sing 90 n n 
C3 H32A FK5 sing 91 n n 
C4 C5 FK5 sing 92 n n 
C4 H41 FK5 sing 93 n n 
C4 H42 FK5 sing 94 n n 
C5 C6 FK5 sing 95 n n 
C5 H51 FK5 sing 96 n n 
C5 H52 FK5 sing 97 n n 
C6 N7 FK5 sing 98 n n 
C6 H61 FK5 sing 99 n n 
C6 H62 FK5 sing 100 n n 
C8 C9 FK5 sing 101 n n 
C8 N7 FK5 sing 102 n n 
C8 O3 FK5 doub 103 n n 
C9 C10 FK5 sing 104 n n 
C9 O4 FK5 doub 105 n n 
C10 C11 FK5 sing 106 n n 
C10 O5 FK5 sing 107 n n 
C10 O6 FK5 sing 108 n n 
C11 C12 FK5 sing 109 n n 
C11 C35 FK5 sing 110 n n 
C11 H11 FK5 sing 111 n n 
C12 C13 FK5 sing 112 n n 
C12 H121 FK5 sing 113 n n 
C12 H122 FK5 sing 114 n n 
C13 C14 FK5 sing 115 n n 
C13 O7 FK5 sing 116 n n 
C13 H13 FK5 sing 117 n n 
C14 C15 FK5 sing 118 n n 
C14 O5 FK5 sing 119 n n 
C14 H14 FK5 sing 120 n n 
C15 C16 FK5 sing 121 n n 
C15 O8 FK5 sing 122 n n 
C15 H15 FK5 sing 123 n n 
C16 C17 FK5 sing 124 n n 
C16 H161 FK5 sing 125 n n 
C16 H162 FK5 sing 126 n n 
C17 C18 FK5 sing 127 n n 
C17 C36 FK5 sing 128 n n 
C17 H17 FK5 sing 129 n n 
C18 C19 FK5 sing 130 n n 
C18 H181 FK5 sing 131 n n 
C18 H182 FK5 sing 132 n n 
C19 C20 FK5 doub 133 e n 
C19 C37 FK5 sing 134 n n 
C20 C21 FK5 sing 135 n n 
C20 H20 FK5 sing 136 n n 
C21 C22 FK5 sing 137 n n 
C21 C38 FK5 sing 138 n n 
C21 H21 FK5 sing 139 n n 
C22 C23 FK5 sing 140 n n 
C22 O9 FK5 doub 141 n n 
C23 C24 FK5 sing 142 n n 
C23 H231 FK5 sing 143 n n 
C23 H232 FK5 sing 144 n n 
C24 C25 FK5 sing 145 n n 
C24 O10 FK5 sing 146 n n 
C24 H24 FK5 sing 147 n n 
C25 C26 FK5 sing 148 n n 
C25 C41 FK5 sing 149 n n 
C25 H25 FK5 sing 150 n n 
C26 C27 FK5 sing 151 n n 
C26 O1 FK5 sing 152 n n 
C26 H26 FK5 sing 153 n n 
C27 C28 FK5 doub 154 e n 
C27 C42 FK5 sing 155 n n 
C28 C29 FK5 sing 156 n n 
C28 H28 FK5 sing 157 n n 
C29 C30 FK5 sing 158 n n 
C29 C34 FK5 sing 159 n n 
C29 H29 FK5 sing 160 n n 
C30 C31 FK5 sing 161 n n 
C30 H301 FK5 sing 162 n n 
C30 H302 FK5 sing 163 n n 
C31 C32 FK5 sing 164 n n 
C31 O11 FK5 sing 165 n n 
C31 H31 FK5 sing 166 n n 
C32 C33 FK5 sing 167 n n 
C32 O12 FK5 sing 168 n n 
C32 H32 FK5 sing 169 n n 
C33 C34 FK5 sing 170 n n 
C33 H331 FK5 sing 171 n n 
C33 H332 FK5 sing 172 n n 
C34 H341 FK5 sing 173 n n 
C34 H342 FK5 sing 174 n n 
C35 H351 FK5 sing 175 n n 
C35 H352 FK5 sing 176 n n 
C35 H353 FK5 sing 177 n n 
C36 H361 FK5 sing 178 n n 
C36 H362 FK5 sing 179 n n 
C36 H363 FK5 sing 180 n n 
C37 H371 FK5 sing 181 n n 
C37 H372 FK5 sing 182 n n 
C37 H373 FK5 sing 183 n n 
C38 C39 FK5 sing 184 n n 
C38 H381 FK5 sing 185 n n 
C38 H382 FK5 sing 186 n n 
C39 C40 FK5 doub 187 n n 
C39 H39 FK5 sing 188 n n 
C40 H401 FK5 sing 189 n n 
C40 H402 FK5 sing 190 n n 
C41 H411 FK5 sing 191 n n 
C41 H412 FK5 sing 192 n n 
C41 H413 FK5 sing 193 n n 
C42 H421 FK5 sing 194 n n 
C42 H422 FK5 sing 195 n n 
C42 H423 FK5 sing 196 n n 
C43 O7 FK5 sing 197 n n 
C43 H431 FK5 sing 198 n n 
C43 H432 FK5 sing 199 n n 
C43 H433 FK5 sing 200 n n 
C44 O8 FK5 sing 201 n n 
C44 H441 FK5 sing 202 n n 
C44 H442 FK5 sing 203 n n 
C44 H443 FK5 sing 204 n n 
C45 O11 FK5 sing 205 n n 
C45 H451 FK5 sing 206 n n 
C45 H452 FK5 sing 207 n n 
C45 H453 FK5 sing 208 n n 
O6 HO6 FK5 sing 209 n n 
O10 HO10 FK5 sing 210 n n 
O12 HO12 FK5 sing 211 n n 
#
_atom_sites.entry_id                     6VRX 
_atom_sites.fract_transf_matrix[1][1]    0.009532 
_atom_sites.fract_transf_matrix[1][2]    0.005504 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011007 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00896 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FK5 A 1 201 201 FK5 FK5 . 
F 2 FK5 B 1 201 201 FK5 FK5 . 
G 2 FK5 C 1 201 201 FK5 FK5 . 
H 2 FK5 D 1 201 201 FK5 FK5 . 
I 3 HOH A 1 301 6 HOH HOH . 
I 3 HOH A 2 302 21 HOH HOH . 
I 3 HOH A 3 303 12 HOH HOH . 
I 3 HOH A 4 304 23 HOH HOH . 
I 3 HOH A 5 305 7 HOH HOH . 
I 3 HOH A 6 306 27 HOH HOH . 
I 3 HOH A 7 307 14 HOH HOH . 
I 3 HOH A 8 308 4 HOH HOH . 
I 3 HOH A 9 309 20 HOH HOH . 
I 3 HOH A 10 310 17 HOH HOH . 
I 3 HOH A 11 311 28 HOH HOH . 
J 3 HOH B 1 301 1 HOH HOH . 
J 3 HOH B 2 302 18 HOH HOH . 
J 3 HOH B 3 303 15 HOH HOH . 
J 3 HOH B 4 304 19 HOH HOH . 
J 3 HOH B 5 305 29 HOH HOH . 
J 3 HOH B 6 306 26 HOH HOH . 
K 3 HOH C 1 301 16 HOH HOH . 
K 3 HOH C 2 302 8 HOH HOH . 
K 3 HOH C 3 303 10 HOH HOH . 
K 3 HOH C 4 304 13 HOH HOH . 
K 3 HOH C 5 305 3 HOH HOH . 
K 3 HOH C 6 306 25 HOH HOH . 
K 3 HOH C 7 307 2 HOH HOH . 
K 3 HOH C 8 308 9 HOH HOH . 
L 3 HOH D 1 301 24 HOH HOH . 
L 3 HOH D 2 302 5 HOH HOH . 
L 3 HOH D 3 303 22 HOH HOH . 
L 3 HOH D 4 304 11 HOH HOH . 
L 3 HOH D 5 305 30 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 FK5 . . . F 2 28.61 -47.691 -1.602 1 46.91 ? C1 FK5 201 B 1 
HETATM 2 C C2 FK5 . . . F 2 29.93 -46.975 -1.431 1 47.91 ? C2 FK5 201 B 1 
HETATM 3 C C3 FK5 . . . F 2 30 -46.314 -0.053 1 43.98 ? C3 FK5 201 B 1 
HETATM 4 C C4 FK5 . . . F 2 28.983 -45.189 0.084 1 38.83 ? C4 FK5 201 B 1 
HETATM 5 C C5 FK5 . . . F 2 29.147 -44.171 -1.045 1 42.51 ? C5 FK5 201 B 1 
HETATM 6 C C6 FK5 . . . F 2 29.171 -44.79 -2.442 1 39.83 ? C6 FK5 201 B 1 
HETATM 7 C C8 FK5 . . . F 2 31.121 -46.029 -3.306 1 47.4 ? C8 FK5 201 B 1 
HETATM 8 C C9 FK5 . . . F 2 31.316 -45.016 -4.26 1 52.85 ? C9 FK5 201 B 1 
HETATM 9 C C10 FK5 . . . F 2 30.701 -45.032 -5.671 1 54.27 ? C10 FK5 201 B 1 
HETATM 10 C C11 FK5 . . . F 2 30.683 -46.438 -6.285 1 47.94 ? C11 FK5 201 B 1 
HETATM 11 C C12 FK5 . . . F 2 29.846 -46.455 -7.561 1 48.9 ? C12 FK5 201 B 1 
HETATM 12 C C13 FK5 . . . F 2 28.506 -45.741 -7.399 1 52.16 ? C13 FK5 201 B 1 
HETATM 13 C C14 FK5 . . . F 2 28.704 -44.355 -6.782 1 47.8 ? C14 FK5 201 B 1 
HETATM 14 C C15 FK5 . . . F 2 27.435 -43.528 -6.491 1 46.19 ? C15 FK5 201 B 1 
HETATM 15 C C16 FK5 . . . F 2 26.332 -44.255 -5.723 1 46.25 ? C16 FK5 201 B 1 
HETATM 16 C C17 FK5 . . . F 2 25.172 -43.336 -5.303 1 48.83 ? C17 FK5 201 B 1 
HETATM 17 C C18 FK5 . . . F 2 24.129 -43.271 -6.414 1 44.34 ? C18 FK5 201 B 1 
HETATM 18 C C19 FK5 . . . F 2 23.366 -44.562 -6.387 1 48.32 ? C19 FK5 201 B 1 
HETATM 19 C C20 FK5 . . . F 2 23.686 -45.62 -7.37 1 48.95 ? C20 FK5 201 B 1 
HETATM 20 C C21 FK5 . . . F 2 23.119 -47.012 -7.269 1 52.21 ? C21 FK5 201 B 1 
HETATM 21 C C22 FK5 . . . F 2 23.914 -47.834 -6.3 1 44.48 ? C22 FK5 201 B 1 
HETATM 22 C C23 FK5 . . . F 2 23.484 -47.942 -4.862 1 47.85 ? C23 FK5 201 B 1 
HETATM 23 C C24 FK5 . . . F 2 24.505 -48.657 -3.974 1 48.73 ? C24 FK5 201 B 1 
HETATM 24 C C25 FK5 . . . F 2 25.678 -47.745 -3.596 1 47.58 ? C25 FK5 201 B 1 
HETATM 25 C C26 FK5 . . . F 2 26.809 -48.459 -2.861 1 47.56 ? C26 FK5 201 B 1 
HETATM 26 C C27 FK5 . . . F 2 27.236 -49.689 -3.623 1 48.18 ? C27 FK5 201 B 1 
HETATM 27 C C28 FK5 . . . F 2 27.211 -50.974 -2.901 1 50.01 ? C28 FK5 201 B 1 
HETATM 28 C C29 FK5 . . . F 2 27.424 -52.286 -3.591 1 50.72 ? C29 FK5 201 B 1 
HETATM 29 C C30 FK5 . . . F 2 28.679 -52.932 -3 1 52.29 ? C30 FK5 201 B 1 
HETATM 30 C C31 FK5 . . . F 2 28.882 -54.376 -3.453 1 47.17 ? C31 FK5 201 B 1 
HETATM 31 C C32 FK5 . . . F 2 27.625 -55.203 -3.217 1 47.4 ? C32 FK5 201 B 1 
HETATM 32 C C33 FK5 . . . F 2 26.413 -54.568 -3.89 1 49.29 ? C33 FK5 201 B 1 
HETATM 33 C C34 FK5 . . . F 2 26.189 -53.157 -3.36 1 49.79 ? C34 FK5 201 B 1 
HETATM 34 C C35 FK5 . . . F 2 32.094 -46.95 -6.571 1 43.28 ? C35 FK5 201 B 1 
HETATM 35 C C36 FK5 . . . F 2 25.595 -41.924 -4.912 1 43.41 ? C36 FK5 201 B 1 
HETATM 36 C C37 FK5 . . . F 2 22.294 -44.725 -5.343 1 44.44 ? C37 FK5 201 B 1 
HETATM 37 C C38 FK5 . . . F 2 23.244 -47.689 -8.631 1 49.75 ? C38 FK5 201 B 1 
HETATM 38 C C39 FK5 . . . F 2 22 -47.415 -9.441 1 51.7 ? C39 FK5 201 B 1 
HETATM 39 C C40 FK5 . . . F 2 22.041 -46.694 -10.718 1 51.67 ? C40 FK5 201 B 1 
HETATM 40 C C41 FK5 . . . F 2 25.176 -46.598 -2.728 1 43.07 ? C41 FK5 201 B 1 
HETATM 41 C C42 FK5 . . . F 2 27.682 -49.641 -5.059 1 42.88 ? C42 FK5 201 B 1 
HETATM 42 C C43 FK5 . . . F 2 27.505 -46.989 -9.09 1 49.19 ? C43 FK5 201 B 1 
HETATM 43 C C44 FK5 . . . F 2 27.49 -41.78 -7.997 1 47.89 ? C44 FK5 201 B 1 
HETATM 44 C C45 FK5 . . . F 2 31.218 -54.54 -3.102 1 46.52 ? C45 FK5 201 B 1 
HETATM 45 N N7 FK5 . . . F 2 30.112 -45.927 -2.438 1 44.65 ? N7 FK5 201 B 1 
HETATM 46 O O1 FK5 . . . F 2 27.886 -47.556 -2.642 1 48.87 ? O1 FK5 201 B 1 
HETATM 47 O O2 FK5 . . . F 2 28.212 -48.511 -0.541 1 50.51 ? O2 FK5 201 B 1 
HETATM 48 O O3 FK5 . . . F 2 32.009 -47.127 -3.218 1 44.68 ? O3 FK5 201 B 1 
HETATM 49 O O4 FK5 . . . F 2 32.09 -43.901 -3.88 1 50.69 ? O4 FK5 201 B 1 
HETATM 50 O O5 FK5 . . . F 2 29.373 -44.546 -5.558 1 52.49 ? O5 FK5 201 B 1 
HETATM 51 O O6 FK5 . . . F 2 31.45 -44.114 -6.523 1 47.01 ? O6 FK5 201 B 1 
HETATM 52 O O7 FK5 . . . F 2 27.865 -45.684 -8.662 1 57.48 ? O7 FK5 201 B 1 
HETATM 53 O O8 FK5 . . . F 2 26.913 -43.029 -7.695 1 48.43 ? O8 FK5 201 B 1 
HETATM 54 O O9 FK5 . . . F 2 25.059 -48.511 -6.739 1 41.91 ? O9 FK5 201 B 1 
HETATM 55 O O10 FK5 . . . F 2 23.799 -49.036 -2.804 1 48.68 ? O10 FK5 201 B 1 
HETATM 56 O O11 FK5 . . . F 2 29.927 -54.954 -2.703 1 56.08 ? O11 FK5 201 B 1 
HETATM 57 O O12 FK5 . . . F 2 27.823 -56.492 -3.756 1 54.03 ? O12 FK5 201 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           229 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           57 
#