data_6VRZ # _model_server_result.job_id omqT13qdvhWBUGtKe6QMWQ _model_server_result.datetime_utc '2025-08-21 09:37:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vrz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6VRZ # _exptl.entry_id 6VRZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.129 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHLORAMPHENICOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.32 _cell.angle_gamma 90 _cell.entry_id 6VRZ _cell.length_a 95.048 _cell.length_b 65.215 _cell.length_c 111.462 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VRZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 194 A GLU 207 1_555 D PR PR . A PR 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.312 ? metalc ? metalc2 A OD2 ASP 198 A ASP 211 1_555 C PR PR . A PR 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.369 ? # _chem_comp.formula 'C11 H12 Cl2 N2 O5' _chem_comp.formula_weight 323.129 _chem_comp.id CLM _chem_comp.mon_nstd_flag . _chem_comp.name CHLORAMPHENICOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 CL1 CLM sing 70 n n C1 CL2 CLM sing 71 n n C1 C2 CLM sing 72 n n C1 H1 CLM sing 73 n n C2 O2 CLM doub 74 n n C2 N2 CLM sing 75 n n N2 C3 CLM sing 76 n n N2 HN2 CLM sing 77 n n C3 C4 CLM sing 78 n n C3 C5 CLM sing 79 n n C3 H3 CLM sing 80 n n C4 O4 CLM sing 81 n n C4 H41 CLM sing 82 n n C4 H42 CLM sing 83 n n O4 HO4 CLM sing 84 n n C5 O5 CLM sing 85 n n C5 C6 CLM sing 86 n n C5 H5 CLM sing 87 n n O5 HO5 CLM sing 88 n n C6 C7 CLM doub 89 n y C6 C11 CLM sing 90 n y C7 C8 CLM sing 91 n y C7 H7 CLM sing 92 n n C8 C9 CLM doub 93 n y C8 H8 CLM sing 94 n n C9 N9 CLM sing 95 n n C9 C10 CLM sing 96 n y N9 O9A CLM sing 97 n n N9 O9B CLM doub 98 n n C10 C11 CLM doub 99 n y C10 H10 CLM sing 100 n n C11 H11 CLM sing 101 n n # _atom_sites.entry_id 6VRZ _atom_sites.fract_transf_matrix[1][1] 0.010521 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004106 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLM A 1 501 500 CLM CLM . C 3 PR A 1 502 601 PR PR . D 3 PR A 1 503 602 PR PR . E 4 HOH A 1 601 710 HOH HOH . E 4 HOH A 2 602 703 HOH HOH . E 4 HOH A 3 603 799 HOH HOH . E 4 HOH A 4 604 758 HOH HOH . E 4 HOH A 5 605 701 HOH HOH . E 4 HOH A 6 606 786 HOH HOH . E 4 HOH A 7 607 704 HOH HOH . E 4 HOH A 8 608 750 HOH HOH . E 4 HOH A 9 609 709 HOH HOH . E 4 HOH A 10 610 733 HOH HOH . E 4 HOH A 11 611 706 HOH HOH . E 4 HOH A 12 612 727 HOH HOH . E 4 HOH A 13 613 705 HOH HOH . E 4 HOH A 14 614 731 HOH HOH . E 4 HOH A 15 615 757 HOH HOH . E 4 HOH A 16 616 793 HOH HOH . E 4 HOH A 17 617 732 HOH HOH . E 4 HOH A 18 618 807 HOH HOH . E 4 HOH A 19 619 809 HOH HOH . E 4 HOH A 20 620 702 HOH HOH . E 4 HOH A 21 621 781 HOH HOH . E 4 HOH A 22 622 772 HOH HOH . E 4 HOH A 23 623 778 HOH HOH . E 4 HOH A 24 624 798 HOH HOH . E 4 HOH A 25 625 726 HOH HOH . E 4 HOH A 26 626 738 HOH HOH . E 4 HOH A 27 627 711 HOH HOH . E 4 HOH A 28 628 745 HOH HOH . E 4 HOH A 29 629 771 HOH HOH . E 4 HOH A 30 630 780 HOH HOH . E 4 HOH A 31 631 795 HOH HOH . E 4 HOH A 32 632 715 HOH HOH . E 4 HOH A 33 633 720 HOH HOH . E 4 HOH A 34 634 721 HOH HOH . E 4 HOH A 35 635 729 HOH HOH . E 4 HOH A 36 636 713 HOH HOH . E 4 HOH A 37 637 752 HOH HOH . E 4 HOH A 38 638 730 HOH HOH . E 4 HOH A 39 639 777 HOH HOH . E 4 HOH A 40 640 773 HOH HOH . E 4 HOH A 41 641 769 HOH HOH . E 4 HOH A 42 642 790 HOH HOH . E 4 HOH A 43 643 707 HOH HOH . E 4 HOH A 44 644 724 HOH HOH . E 4 HOH A 45 645 734 HOH HOH . E 4 HOH A 46 646 801 HOH HOH . E 4 HOH A 47 647 764 HOH HOH . E 4 HOH A 48 648 746 HOH HOH . E 4 HOH A 49 649 749 HOH HOH . E 4 HOH A 50 650 770 HOH HOH . E 4 HOH A 51 651 760 HOH HOH . E 4 HOH A 52 652 736 HOH HOH . E 4 HOH A 53 653 802 HOH HOH . E 4 HOH A 54 654 796 HOH HOH . E 4 HOH A 55 655 810 HOH HOH . E 4 HOH A 56 656 756 HOH HOH . E 4 HOH A 57 657 735 HOH HOH . E 4 HOH A 58 658 762 HOH HOH . E 4 HOH A 59 659 716 HOH HOH . E 4 HOH A 60 660 765 HOH HOH . E 4 HOH A 61 661 806 HOH HOH . E 4 HOH A 62 662 718 HOH HOH . E 4 HOH A 63 663 714 HOH HOH . E 4 HOH A 64 664 768 HOH HOH . E 4 HOH A 65 665 779 HOH HOH . E 4 HOH A 66 666 791 HOH HOH . E 4 HOH A 67 667 761 HOH HOH . E 4 HOH A 68 668 742 HOH HOH . E 4 HOH A 69 669 719 HOH HOH . E 4 HOH A 70 670 748 HOH HOH . E 4 HOH A 71 671 755 HOH HOH . E 4 HOH A 72 672 754 HOH HOH . E 4 HOH A 73 673 751 HOH HOH . E 4 HOH A 74 674 753 HOH HOH . E 4 HOH A 75 675 774 HOH HOH . E 4 HOH A 76 676 722 HOH HOH . E 4 HOH A 77 677 712 HOH HOH . E 4 HOH A 78 678 717 HOH HOH . E 4 HOH A 79 679 739 HOH HOH . E 4 HOH A 80 680 794 HOH HOH . E 4 HOH A 81 681 783 HOH HOH . E 4 HOH A 82 682 763 HOH HOH . E 4 HOH A 83 683 784 HOH HOH . E 4 HOH A 84 684 725 HOH HOH . E 4 HOH A 85 685 789 HOH HOH . E 4 HOH A 86 686 785 HOH HOH . E 4 HOH A 87 687 747 HOH HOH . E 4 HOH A 88 688 788 HOH HOH . E 4 HOH A 89 689 759 HOH HOH . E 4 HOH A 90 690 776 HOH HOH . E 4 HOH A 91 691 737 HOH HOH . E 4 HOH A 92 692 775 HOH HOH . E 4 HOH A 93 693 743 HOH HOH . E 4 HOH A 94 694 767 HOH HOH . E 4 HOH A 95 695 811 HOH HOH . E 4 HOH A 96 696 803 HOH HOH . E 4 HOH A 97 697 797 HOH HOH . E 4 HOH A 98 698 766 HOH HOH . E 4 HOH A 99 699 723 HOH HOH . E 4 HOH A 100 700 805 HOH HOH . E 4 HOH A 101 701 787 HOH HOH . E 4 HOH A 102 702 740 HOH HOH . E 4 HOH A 103 703 800 HOH HOH . E 4 HOH A 104 704 792 HOH HOH . E 4 HOH A 105 705 808 HOH HOH . E 4 HOH A 106 706 728 HOH HOH . E 4 HOH A 107 707 744 HOH HOH . E 4 HOH A 108 708 804 HOH HOH . E 4 HOH A 109 709 708 HOH HOH . E 4 HOH A 110 710 782 HOH HOH . E 4 HOH A 111 711 741 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLM . . . B 2 -20.279 16.62 30.446 1 51.02 ? C1 CLM 501 A 1 HETATM 2 CL CL1 CLM . . . B 2 -19.422 16.193 31.96 1 53.13 ? CL1 CLM 501 A 1 HETATM 3 CL CL2 CLM . . . B 2 -19.169 17.38 29.26 1 52.12 ? CL2 CLM 501 A 1 HETATM 4 C C2 CLM . . . B 2 -20.95 15.395 29.872 1 50.85 ? C2 CLM 501 A 1 HETATM 5 O O2 CLM . . . B 2 -22.131 15.203 30.121 1 51.96 ? O2 CLM 501 A 1 HETATM 6 N N2 CLM . . . B 2 -20.244 14.563 29.093 1 48.21 ? N2 CLM 501 A 1 HETATM 7 C C3 CLM . . . B 2 -19.294 13.557 29.571 1 54.17 ? C3 CLM 501 A 1 HETATM 8 C C4 CLM . . . B 2 -18.295 13.17 28.472 1 45.34 ? C4 CLM 501 A 1 HETATM 9 O O4 CLM . . . B 2 -18.801 13.539 27.137 1 45.02 ? O4 CLM 501 A 1 HETATM 10 C C5 CLM . . . B 2 -19.972 12.331 30.216 1 50.52 ? C5 CLM 501 A 1 HETATM 11 O O5 CLM . . . B 2 -19.003 11.302 30.475 1 48.43 ? O5 CLM 501 A 1 HETATM 12 C C6 CLM . . . B 2 -21.105 11.765 29.432 1 46.63 ? C6 CLM 501 A 1 HETATM 13 C C7 CLM . . . B 2 -22.411 12.137 29.757 1 54.11 ? C7 CLM 501 A 1 HETATM 14 C C8 CLM . . . B 2 -23.489 11.617 29.045 1 51.24 ? C8 CLM 501 A 1 HETATM 15 C C9 CLM . . . B 2 -23.268 10.707 28.01 1 49.94 ? C9 CLM 501 A 1 HETATM 16 N N9 CLM . . . B 2 -24.357 10.185 27.295 1 49.22 ? N9 CLM 501 A 1 HETATM 17 O O9A CLM . . . B 2 -24.309 10.11 25.898 1 49.88 ? O9A CLM 501 A 1 HETATM 18 O O9B CLM . . . B 2 -25.354 9.796 27.882 1 48.69 ? O9B CLM 501 A 1 HETATM 19 C C10 CLM . . . B 2 -21.965 10.322 27.685 1 50.74 ? C10 CLM 501 A 1 HETATM 20 C C11 CLM . . . B 2 -20.887 10.844 28.399 1 54.04 ? C11 CLM 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #