data_6VS4
#
_model_server_result.job_id            H5owBs63KNdJUQFIr23CdA 
_model_server_result.datetime_utc      '2025-03-12 19:57:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vs4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":302}' 
#
_entry.id    6VS4 
#
_exptl.entry_id    6VS4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VS4 
_cell.length_a            65.19 
_cell.length_b            65.19 
_cell.length_c            307.71 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VS4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    'P 4nw 2abw' 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 307.71 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 53 A THR 49 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc2 D O2B GDP . A GDP 302 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc3 E MG MG . A MG 303 1_555 J O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc4 E MG MG . A MG 303 1_555 J O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc5 B OG1 THR 53 B THR 49 1_555 I MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc6 H O2B GDP . B GDP 303 1_555 I MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc7 I MG MG . B MG 304 1_555 K O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc8 I MG MG . B MG 304 1_555 K O HOH . B HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc9 I MG MG . B MG 304 1_555 K O HOH . B HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc10 I MG MG . B MG 304 1_555 K O HOH . B HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 282 n n 
C1 C2 PEG sing 283 n n 
C1 H11 PEG sing 284 n n 
C1 H12 PEG sing 285 n n 
O1 HO1 PEG sing 286 n n 
C2 O2 PEG sing 287 n n 
C2 H21 PEG sing 288 n n 
C2 H22 PEG sing 289 n n 
O2 C3 PEG sing 290 n n 
C3 C4 PEG sing 291 n n 
C3 H31 PEG sing 292 n n 
C3 H32 PEG sing 293 n n 
C4 O4 PEG sing 294 n n 
C4 H41 PEG sing 295 n n 
C4 H42 PEG sing 296 n n 
O4 HO4 PEG sing 297 n n 
#
_atom_sites.entry_id                     6VS4 
_atom_sites.fract_transf_matrix[1][1]    0.01534 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01534 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00325 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PEG A 1 301 400 PEG PEG . 
D 3 GDP A 1 302 300 GDP GDP . 
E 4 MG A 1 303 301 MG MG . 
F 2 PEG B 1 301 400 PEG PEG . 
G 2 PEG B 1 302 401 PEG PEG . 
H 3 GDP B 1 303 300 GDP GDP . 
I 4 MG B 1 304 301 MG MG . 
J 5 HOH A 1 401 40 HOH HOH . 
J 5 HOH A 2 402 38 HOH HOH . 
J 5 HOH A 3 403 48 HOH HOH . 
J 5 HOH A 4 404 91 HOH HOH . 
J 5 HOH A 5 405 32 HOH HOH . 
J 5 HOH A 6 406 67 HOH HOH . 
J 5 HOH A 7 407 24 HOH HOH . 
J 5 HOH A 8 408 84 HOH HOH . 
J 5 HOH A 9 409 10 HOH HOH . 
J 5 HOH A 10 410 92 HOH HOH . 
J 5 HOH A 11 411 42 HOH HOH . 
J 5 HOH A 12 412 69 HOH HOH . 
J 5 HOH A 13 413 72 HOH HOH . 
J 5 HOH A 14 414 116 HOH HOH . 
J 5 HOH A 15 415 6 HOH HOH . 
J 5 HOH A 16 416 117 HOH HOH . 
J 5 HOH A 17 417 9 HOH HOH . 
J 5 HOH A 18 418 41 HOH HOH . 
J 5 HOH A 19 419 77 HOH HOH . 
J 5 HOH A 20 420 157 HOH HOH . 
J 5 HOH A 21 421 83 HOH HOH . 
J 5 HOH A 22 422 66 HOH HOH . 
J 5 HOH A 23 423 76 HOH HOH . 
J 5 HOH A 24 424 85 HOH HOH . 
J 5 HOH A 25 425 62 HOH HOH . 
J 5 HOH A 26 426 20 HOH HOH . 
J 5 HOH A 27 427 34 HOH HOH . 
J 5 HOH A 28 428 31 HOH HOH . 
J 5 HOH A 29 429 156 HOH HOH . 
J 5 HOH A 30 430 37 HOH HOH . 
J 5 HOH A 31 431 4 HOH HOH . 
J 5 HOH A 32 432 82 HOH HOH . 
J 5 HOH A 33 433 27 HOH HOH . 
J 5 HOH A 34 434 74 HOH HOH . 
J 5 HOH A 35 435 86 HOH HOH . 
J 5 HOH A 36 436 21 HOH HOH . 
J 5 HOH A 37 437 80 HOH HOH . 
J 5 HOH A 38 438 61 HOH HOH . 
J 5 HOH A 39 439 113 HOH HOH . 
J 5 HOH A 40 440 13 HOH HOH . 
J 5 HOH A 41 441 118 HOH HOH . 
K 5 HOH B 1 401 132 HOH HOH . 
K 5 HOH B 2 402 52 HOH HOH . 
K 5 HOH B 3 403 99 HOH HOH . 
K 5 HOH B 4 404 55 HOH HOH . 
K 5 HOH B 5 405 17 HOH HOH . 
K 5 HOH B 6 406 12 HOH HOH . 
K 5 HOH B 7 407 103 HOH HOH . 
K 5 HOH B 8 408 28 HOH HOH . 
K 5 HOH B 9 409 96 HOH HOH . 
K 5 HOH B 10 410 11 HOH HOH . 
K 5 HOH B 11 411 5 HOH HOH . 
K 5 HOH B 12 412 90 HOH HOH . 
K 5 HOH B 13 413 142 HOH HOH . 
K 5 HOH B 14 414 126 HOH HOH . 
K 5 HOH B 15 415 3 HOH HOH . 
K 5 HOH B 16 416 8 HOH HOH . 
K 5 HOH B 17 417 108 HOH HOH . 
K 5 HOH B 18 418 88 HOH HOH . 
K 5 HOH B 19 419 145 HOH HOH . 
K 5 HOH B 20 420 100 HOH HOH . 
K 5 HOH B 21 421 89 HOH HOH . 
K 5 HOH B 22 422 30 HOH HOH . 
K 5 HOH B 23 423 130 HOH HOH . 
K 5 HOH B 24 424 97 HOH HOH . 
K 5 HOH B 25 425 18 HOH HOH . 
K 5 HOH B 26 426 95 HOH HOH . 
K 5 HOH B 27 427 7 HOH HOH . 
K 5 HOH B 28 428 110 HOH HOH . 
K 5 HOH B 29 429 29 HOH HOH . 
K 5 HOH B 30 430 60 HOH HOH . 
K 5 HOH B 31 431 107 HOH HOH . 
K 5 HOH B 32 432 111 HOH HOH . 
K 5 HOH B 33 433 16 HOH HOH . 
K 5 HOH B 34 434 15 HOH HOH . 
K 5 HOH B 35 435 139 HOH HOH . 
K 5 HOH B 36 436 51 HOH HOH . 
K 5 HOH B 37 437 87 HOH HOH . 
K 5 HOH B 38 438 102 HOH HOH . 
K 5 HOH B 39 439 26 HOH HOH . 
K 5 HOH B 40 440 50 HOH HOH . 
K 5 HOH B 41 441 58 HOH HOH . 
K 5 HOH B 42 442 124 HOH HOH . 
K 5 HOH B 43 443 93 HOH HOH . 
K 5 HOH B 44 444 101 HOH HOH . 
K 5 HOH B 45 445 36 HOH HOH . 
K 5 HOH B 46 446 144 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . G 2 59.178 7.672 106.438 1 72.58 ? C1 PEG 302 B 1 
HETATM 2 O O1 PEG . . . G 2 59.281 9.08 106.508 1 74.17 ? O1 PEG 302 B 1 
HETATM 3 C C2 PEG . . . G 2 60.376 6.978 107.012 1 74.98 ? C2 PEG 302 B 1 
HETATM 4 O O2 PEG . . . G 2 60.461 7.203 108.415 1 82.12 ? O2 PEG 302 B 1 
HETATM 5 C C3 PEG . . . G 2 61.516 6.467 109.026 1 82.19 ? C3 PEG 302 B 1 
HETATM 6 C C4 PEG . . . G 2 60.995 5.694 110.2 1 74.65 ? C4 PEG 302 B 1 
HETATM 7 O O4 PEG . . . G 2 60.429 6.532 111.183 1 76.27 ? O4 PEG 302 B 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           7 
#