data_6VS9 # _model_server_result.job_id icqirIpahrblrWP94JEwWQ _model_server_result.datetime_utc '2024-11-19 23:28:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vs9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":203}' # _entry.id 6VS9 # _exptl.entry_id 6VS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VS9 _cell.length_a 61.014 _cell.length_b 70.581 _cell.length_c 72.205 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,N 1 1 B,K,L,M,O 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 40 A HIS 38 1_555 F CO CO . A CO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc2 A NE2 HIS 159 A HIS 157 1_555 E CO CO . A CO 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc3 E CO CO . A CO 203 1_555 N O HOH . A HOH 326 3_745 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc4 E CO CO . A CO 203 1_555 B NE2 HIS 40 B HIS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc5 E CO CO . A CO 203 1_555 O O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc6 E CO CO . A CO 203 1_555 O O HOH . B HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc7 E CO CO . A CO 203 1_555 O O HOH . B HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc8 F CO CO . A CO 204 1_555 N O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc9 F CO CO . A CO 204 1_555 N O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc10 F CO CO . A CO 204 1_555 N O HOH . A HOH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc11 F CO CO . A CO 204 1_555 N O HOH . A HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc12 F CO CO . A CO 204 1_555 O O HOH . B HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 353 n n P O2 PO4 sing 354 n n P O3 PO4 sing 355 n n P O4 PO4 sing 356 n n # _atom_sites.entry_id 6VS9 _atom_sites.fract_transf_matrix[1][1] 0.01639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RK4 A 1 201 1 RK4 LIG . D 3 NAP A 1 202 2 NAP NDP . E 4 CO A 1 203 1 CO CO . F 4 CO A 1 204 2 CO CO . G 5 PO4 A 1 205 1 PO4 PO4 . H 5 PO4 A 1 206 3 PO4 PO4 . I 6 GOL A 1 207 1 GOL GOL . J 7 SO4 A 1 208 1 SO4 SO4 . K 2 RK4 B 1 201 2 RK4 LIG . L 3 NAP B 1 202 1 NAP NDP . M 5 PO4 B 1 203 2 PO4 PO4 . N 8 HOH A 1 301 240 HOH HOH . N 8 HOH A 2 302 196 HOH HOH . N 8 HOH A 3 303 73 HOH HOH . N 8 HOH A 4 304 227 HOH HOH . N 8 HOH A 5 305 153 HOH HOH . N 8 HOH A 6 306 115 HOH HOH . N 8 HOH A 7 307 40 HOH HOH . N 8 HOH A 8 308 110 HOH HOH . N 8 HOH A 9 309 170 HOH HOH . N 8 HOH A 10 310 103 HOH HOH . N 8 HOH A 11 311 204 HOH HOH . N 8 HOH A 12 312 11 HOH HOH . N 8 HOH A 13 313 14 HOH HOH . N 8 HOH A 14 314 78 HOH HOH . N 8 HOH A 15 315 237 HOH HOH . N 8 HOH A 16 316 48 HOH HOH . N 8 HOH A 17 317 105 HOH HOH . N 8 HOH A 18 318 195 HOH HOH . N 8 HOH A 19 319 145 HOH HOH . N 8 HOH A 20 320 169 HOH HOH . N 8 HOH A 21 321 72 HOH HOH . N 8 HOH A 22 322 18 HOH HOH . N 8 HOH A 23 323 57 HOH HOH . N 8 HOH A 24 324 87 HOH HOH . N 8 HOH A 25 325 5 HOH HOH . N 8 HOH A 26 326 150 HOH HOH . N 8 HOH A 27 327 16 HOH HOH . N 8 HOH A 28 328 134 HOH HOH . N 8 HOH A 29 329 23 HOH HOH . N 8 HOH A 30 330 88 HOH HOH . N 8 HOH A 31 331 2 HOH HOH . N 8 HOH A 32 332 215 HOH HOH . N 8 HOH A 33 333 35 HOH HOH . N 8 HOH A 34 334 71 HOH HOH . N 8 HOH A 35 335 43 HOH HOH . N 8 HOH A 36 336 6 HOH HOH . N 8 HOH A 37 337 106 HOH HOH . N 8 HOH A 38 338 25 HOH HOH . N 8 HOH A 39 339 171 HOH HOH . N 8 HOH A 40 340 157 HOH HOH . N 8 HOH A 41 341 61 HOH HOH . N 8 HOH A 42 342 68 HOH HOH . N 8 HOH A 43 343 19 HOH HOH . N 8 HOH A 44 344 131 HOH HOH . N 8 HOH A 45 345 113 HOH HOH . N 8 HOH A 46 346 132 HOH HOH . N 8 HOH A 47 347 129 HOH HOH . N 8 HOH A 48 348 17 HOH HOH . N 8 HOH A 49 349 4 HOH HOH . N 8 HOH A 50 350 50 HOH HOH . N 8 HOH A 51 351 108 HOH HOH . N 8 HOH A 52 352 86 HOH HOH . N 8 HOH A 53 353 94 HOH HOH . N 8 HOH A 54 354 144 HOH HOH . N 8 HOH A 55 355 38 HOH HOH . N 8 HOH A 56 356 92 HOH HOH . N 8 HOH A 57 357 95 HOH HOH . N 8 HOH A 58 358 32 HOH HOH . N 8 HOH A 59 359 148 HOH HOH . N 8 HOH A 60 360 39 HOH HOH . N 8 HOH A 61 361 107 HOH HOH . N 8 HOH A 62 362 69 HOH HOH . N 8 HOH A 63 363 147 HOH HOH . N 8 HOH A 64 364 243 HOH HOH . N 8 HOH A 65 365 76 HOH HOH . N 8 HOH A 66 366 101 HOH HOH . N 8 HOH A 67 367 232 HOH HOH . N 8 HOH A 68 368 152 HOH HOH . N 8 HOH A 69 369 234 HOH HOH . N 8 HOH A 70 370 133 HOH HOH . N 8 HOH A 71 371 77 HOH HOH . N 8 HOH A 72 372 190 HOH HOH . N 8 HOH A 73 373 213 HOH HOH . N 8 HOH A 74 374 59 HOH HOH . N 8 HOH A 75 375 214 HOH HOH . N 8 HOH A 76 376 136 HOH HOH . N 8 HOH A 77 377 194 HOH HOH . N 8 HOH A 78 378 216 HOH HOH . N 8 HOH A 79 379 104 HOH HOH . N 8 HOH A 80 380 181 HOH HOH . N 8 HOH A 81 381 203 HOH HOH . N 8 HOH A 82 382 114 HOH HOH . N 8 HOH A 83 383 52 HOH HOH . N 8 HOH A 84 384 185 HOH HOH . N 8 HOH A 85 385 221 HOH HOH . N 8 HOH A 86 386 146 HOH HOH . N 8 HOH A 87 387 246 HOH HOH . N 8 HOH A 88 388 231 HOH HOH . N 8 HOH A 89 389 188 HOH HOH . N 8 HOH A 90 390 225 HOH HOH . N 8 HOH A 91 391 135 HOH HOH . N 8 HOH A 92 392 198 HOH HOH . N 8 HOH A 93 393 30 HOH HOH . N 8 HOH A 94 394 191 HOH HOH . N 8 HOH A 95 395 236 HOH HOH . N 8 HOH A 96 396 223 HOH HOH . N 8 HOH A 97 397 217 HOH HOH . N 8 HOH A 98 398 47 HOH HOH . N 8 HOH A 99 399 226 HOH HOH . N 8 HOH A 100 400 158 HOH HOH . N 8 HOH A 101 401 125 HOH HOH . N 8 HOH A 102 402 229 HOH HOH . N 8 HOH A 103 403 81 HOH HOH . N 8 HOH A 104 404 74 HOH HOH . N 8 HOH A 105 405 245 HOH HOH . N 8 HOH A 106 406 186 HOH HOH . N 8 HOH A 107 407 121 HOH HOH . N 8 HOH A 108 408 178 HOH HOH . N 8 HOH A 109 409 141 HOH HOH . N 8 HOH A 110 410 244 HOH HOH . O 8 HOH B 1 301 211 HOH HOH . O 8 HOH B 2 302 176 HOH HOH . O 8 HOH B 3 303 118 HOH HOH . O 8 HOH B 4 304 167 HOH HOH . O 8 HOH B 5 305 96 HOH HOH . O 8 HOH B 6 306 124 HOH HOH . O 8 HOH B 7 307 138 HOH HOH . O 8 HOH B 8 308 164 HOH HOH . O 8 HOH B 9 309 130 HOH HOH . O 8 HOH B 10 310 209 HOH HOH . O 8 HOH B 11 311 27 HOH HOH . O 8 HOH B 12 312 151 HOH HOH . O 8 HOH B 13 313 116 HOH HOH . O 8 HOH B 14 314 67 HOH HOH . O 8 HOH B 15 315 15 HOH HOH . O 8 HOH B 16 316 230 HOH HOH . O 8 HOH B 17 317 24 HOH HOH . O 8 HOH B 18 318 212 HOH HOH . O 8 HOH B 19 319 36 HOH HOH . O 8 HOH B 20 320 28 HOH HOH . O 8 HOH B 21 321 168 HOH HOH . O 8 HOH B 22 322 44 HOH HOH . O 8 HOH B 23 323 34 HOH HOH . O 8 HOH B 24 324 53 HOH HOH . O 8 HOH B 25 325 75 HOH HOH . O 8 HOH B 26 326 100 HOH HOH . O 8 HOH B 27 327 37 HOH HOH . O 8 HOH B 28 328 126 HOH HOH . O 8 HOH B 29 329 142 HOH HOH . O 8 HOH B 30 330 22 HOH HOH . O 8 HOH B 31 331 20 HOH HOH . O 8 HOH B 32 332 184 HOH HOH . O 8 HOH B 33 333 56 HOH HOH . O 8 HOH B 34 334 112 HOH HOH . O 8 HOH B 35 335 65 HOH HOH . O 8 HOH B 36 336 117 HOH HOH . O 8 HOH B 37 337 222 HOH HOH . O 8 HOH B 38 338 84 HOH HOH . O 8 HOH B 39 339 42 HOH HOH . O 8 HOH B 40 340 140 HOH HOH . O 8 HOH B 41 341 183 HOH HOH . O 8 HOH B 42 342 179 HOH HOH . O 8 HOH B 43 343 13 HOH HOH . O 8 HOH B 44 344 85 HOH HOH . O 8 HOH B 45 345 187 HOH HOH . O 8 HOH B 46 346 89 HOH HOH . O 8 HOH B 47 347 41 HOH HOH . O 8 HOH B 48 348 102 HOH HOH . O 8 HOH B 49 349 163 HOH HOH . O 8 HOH B 50 350 90 HOH HOH . O 8 HOH B 51 351 8 HOH HOH . O 8 HOH B 52 352 155 HOH HOH . O 8 HOH B 53 353 70 HOH HOH . O 8 HOH B 54 354 3 HOH HOH . O 8 HOH B 55 355 137 HOH HOH . O 8 HOH B 56 356 1 HOH HOH . O 8 HOH B 57 357 83 HOH HOH . O 8 HOH B 58 358 91 HOH HOH . O 8 HOH B 59 359 193 HOH HOH . O 8 HOH B 60 360 161 HOH HOH . O 8 HOH B 61 361 219 HOH HOH . O 8 HOH B 62 362 99 HOH HOH . O 8 HOH B 63 363 82 HOH HOH . O 8 HOH B 64 364 122 HOH HOH . O 8 HOH B 65 365 60 HOH HOH . O 8 HOH B 66 366 111 HOH HOH . O 8 HOH B 67 367 58 HOH HOH . O 8 HOH B 68 368 172 HOH HOH . O 8 HOH B 69 369 21 HOH HOH . O 8 HOH B 70 370 64 HOH HOH . O 8 HOH B 71 371 46 HOH HOH . O 8 HOH B 72 372 93 HOH HOH . O 8 HOH B 73 373 205 HOH HOH . O 8 HOH B 74 374 97 HOH HOH . O 8 HOH B 75 375 49 HOH HOH . O 8 HOH B 76 376 31 HOH HOH . O 8 HOH B 77 377 182 HOH HOH . O 8 HOH B 78 378 29 HOH HOH . O 8 HOH B 79 379 62 HOH HOH . O 8 HOH B 80 380 9 HOH HOH . O 8 HOH B 81 381 45 HOH HOH . O 8 HOH B 82 382 26 HOH HOH . O 8 HOH B 83 383 200 HOH HOH . O 8 HOH B 84 384 80 HOH HOH . O 8 HOH B 85 385 180 HOH HOH . O 8 HOH B 86 386 63 HOH HOH . O 8 HOH B 87 387 7 HOH HOH . O 8 HOH B 88 388 206 HOH HOH . O 8 HOH B 89 389 51 HOH HOH . O 8 HOH B 90 390 238 HOH HOH . O 8 HOH B 91 391 54 HOH HOH . O 8 HOH B 92 392 208 HOH HOH . O 8 HOH B 93 393 12 HOH HOH . O 8 HOH B 94 394 239 HOH HOH . O 8 HOH B 95 395 210 HOH HOH . O 8 HOH B 96 396 120 HOH HOH . O 8 HOH B 97 397 66 HOH HOH . O 8 HOH B 98 398 202 HOH HOH . O 8 HOH B 99 399 79 HOH HOH . O 8 HOH B 100 400 127 HOH HOH . O 8 HOH B 101 401 10 HOH HOH . O 8 HOH B 102 402 233 HOH HOH . O 8 HOH B 103 403 123 HOH HOH . O 8 HOH B 104 404 199 HOH HOH . O 8 HOH B 105 405 143 HOH HOH . O 8 HOH B 106 406 128 HOH HOH . O 8 HOH B 107 407 165 HOH HOH . O 8 HOH B 108 408 156 HOH HOH . O 8 HOH B 109 409 33 HOH HOH . O 8 HOH B 110 410 160 HOH HOH . O 8 HOH B 111 411 149 HOH HOH . O 8 HOH B 112 412 207 HOH HOH . O 8 HOH B 113 413 218 HOH HOH . O 8 HOH B 114 414 159 HOH HOH . O 8 HOH B 115 415 192 HOH HOH . O 8 HOH B 116 416 119 HOH HOH . O 8 HOH B 117 417 55 HOH HOH . O 8 HOH B 118 418 154 HOH HOH . O 8 HOH B 119 419 139 HOH HOH . O 8 HOH B 120 420 174 HOH HOH . O 8 HOH B 121 421 220 HOH HOH . O 8 HOH B 122 422 224 HOH HOH . O 8 HOH B 123 423 228 HOH HOH . O 8 HOH B 124 424 173 HOH HOH . O 8 HOH B 125 425 242 HOH HOH . O 8 HOH B 126 426 98 HOH HOH . O 8 HOH B 127 427 235 HOH HOH . O 8 HOH B 128 428 109 HOH HOH . O 8 HOH B 129 429 177 HOH HOH . O 8 HOH B 130 430 197 HOH HOH . O 8 HOH B 131 431 189 HOH HOH . O 8 HOH B 132 432 166 HOH HOH . O 8 HOH B 133 433 162 HOH HOH . O 8 HOH B 134 434 201 HOH HOH . O 8 HOH B 135 435 175 HOH HOH . O 8 HOH B 136 436 241 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . M 5 22.593 61.19 14.914 1 54.58 ? P PO4 203 B 1 HETATM 2 O O1 PO4 . . . M 5 22.388 62.088 13.721 1 62.31 ? O1 PO4 203 B 1 HETATM 3 O O2 PO4 . . . M 5 22.027 59.823 14.614 1 57.5 ? O2 PO4 203 B 1 HETATM 4 O O3 PO4 . . . M 5 21.928 61.774 16.139 1 52.47 ? O3 PO4 203 B 1 HETATM 5 O O4 PO4 . . . M 5 24.071 61.089 15.186 1 59.07 ? O4 PO4 203 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #