data_6VSE # _model_server_result.job_id AzVLWjSlWJXA-hALhbxepQ _model_server_result.datetime_utc '2024-11-23 13:19:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vse # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 6VSE # _exptl.entry_id 6VSE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.243 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(phenoxymethyl)benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VSE _cell.length_a 61.443 _cell.length_b 71.106 _cell.length_c 72.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VSE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,I 1 1 B,E,F,G,H,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 40 A HIS 38 1_555 C CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc2 C CO CO . A CO 201 1_555 I O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc3 C CO CO . A CO 201 1_555 I O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc4 C CO CO . A CO 201 1_555 I O HOH . A HOH 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc5 C CO CO . A CO 201 1_555 B NE2 HIS 159 B HIS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc6 C CO CO . A CO 201 1_555 J O HOH . B HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc7 I O HOH . A HOH 386 1_555 E CO CO . B CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.756 ? metalc ? metalc8 B NE2 HIS 40 B HIS 38 1_555 E CO CO . B CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc9 E CO CO . B CO 201 1_555 J O HOH . B HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc10 E CO CO . B CO 201 1_555 J O HOH . B HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc11 E CO CO . B CO 201 1_555 J O HOH . B HOH 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc12 E CO CO . B CO 201 1_555 J O HOH . B HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? # _chem_comp.formula 'C14 H12 O3' _chem_comp.formula_weight 228.243 _chem_comp.id 4RG _chem_comp.mon_nstd_flag . _chem_comp.name '3-(phenoxymethyl)benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAI CAA 4RG doub 1 n n CAB CAA 4RG sing 2 n n CAA OAH 4RG sing 3 n n CAG CAB 4RG doub 4 n y CAB CAC 4RG sing 5 n y CAD CAC 4RG doub 6 n y CAC HAC 4RG sing 7 n n CAE CAD 4RG sing 8 n y CAD CAJ 4RG sing 9 n n CAF CAE 4RG doub 10 n y CAE HAE 4RG sing 11 n n CAF CAG 4RG sing 12 n y CAF HAF 4RG sing 13 n n CAG HAG 4RG sing 14 n n OAH HOAH 4RG sing 15 n n OAK CAJ 4RG sing 16 n n CAJ HAJ 4RG sing 17 n n CAJ HAJA 4RG sing 18 n n CAL OAK 4RG sing 19 n n CAQ CAL 4RG doub 20 n y CAM CAL 4RG sing 21 n y CAN CAM 4RG doub 22 n y CAM HAM 4RG sing 23 n n CAO CAN 4RG sing 24 n y CAN HAN 4RG sing 25 n n CAO CAP 4RG doub 26 n y CAO HAO 4RG sing 27 n n CAP CAQ 4RG sing 28 n y CAP HAP 4RG sing 29 n n CAQ HAQ 4RG sing 30 n n # _atom_sites.entry_id 6VSE _atom_sites.fract_transf_matrix[1][1] 0.016275 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 201 1 CO CO . D 3 NAP A 1 202 1 NAP NDP . E 2 CO B 1 201 2 CO CO . F 3 NAP B 1 202 2 NAP NDP . G 4 4RG B 1 203 1 4RG LIG . H 5 PO4 B 1 204 1 PO4 PO4 . I 6 HOH A 1 301 143 HOH HOH . I 6 HOH A 2 302 163 HOH HOH . I 6 HOH A 3 303 182 HOH HOH . I 6 HOH A 4 304 58 HOH HOH . I 6 HOH A 5 305 64 HOH HOH . I 6 HOH A 6 306 16 HOH HOH . I 6 HOH A 7 307 78 HOH HOH . I 6 HOH A 8 308 25 HOH HOH . I 6 HOH A 9 309 112 HOH HOH . I 6 HOH A 10 310 185 HOH HOH . I 6 HOH A 11 311 63 HOH HOH . I 6 HOH A 12 312 119 HOH HOH . I 6 HOH A 13 313 137 HOH HOH . I 6 HOH A 14 314 92 HOH HOH . I 6 HOH A 15 315 156 HOH HOH . I 6 HOH A 16 316 102 HOH HOH . I 6 HOH A 17 317 113 HOH HOH . I 6 HOH A 18 318 147 HOH HOH . I 6 HOH A 19 319 132 HOH HOH . I 6 HOH A 20 320 117 HOH HOH . I 6 HOH A 21 321 83 HOH HOH . I 6 HOH A 22 322 75 HOH HOH . I 6 HOH A 23 323 36 HOH HOH . I 6 HOH A 24 324 12 HOH HOH . I 6 HOH A 25 325 93 HOH HOH . I 6 HOH A 26 326 173 HOH HOH . I 6 HOH A 27 327 34 HOH HOH . I 6 HOH A 28 328 15 HOH HOH . I 6 HOH A 29 329 107 HOH HOH . I 6 HOH A 30 330 6 HOH HOH . I 6 HOH A 31 331 86 HOH HOH . I 6 HOH A 32 332 72 HOH HOH . I 6 HOH A 33 333 66 HOH HOH . I 6 HOH A 34 334 115 HOH HOH . I 6 HOH A 35 335 91 HOH HOH . I 6 HOH A 36 336 73 HOH HOH . I 6 HOH A 37 337 100 HOH HOH . I 6 HOH A 38 338 129 HOH HOH . I 6 HOH A 39 339 84 HOH HOH . I 6 HOH A 40 340 152 HOH HOH . I 6 HOH A 41 341 23 HOH HOH . I 6 HOH A 42 342 45 HOH HOH . I 6 HOH A 43 343 162 HOH HOH . I 6 HOH A 44 344 3 HOH HOH . I 6 HOH A 45 345 95 HOH HOH . I 6 HOH A 46 346 104 HOH HOH . I 6 HOH A 47 347 60 HOH HOH . I 6 HOH A 48 348 126 HOH HOH . I 6 HOH A 49 349 51 HOH HOH . I 6 HOH A 50 350 85 HOH HOH . I 6 HOH A 51 351 61 HOH HOH . I 6 HOH A 52 352 149 HOH HOH . I 6 HOH A 53 353 179 HOH HOH . I 6 HOH A 54 354 158 HOH HOH . I 6 HOH A 55 355 4 HOH HOH . I 6 HOH A 56 356 19 HOH HOH . I 6 HOH A 57 357 150 HOH HOH . I 6 HOH A 58 358 40 HOH HOH . I 6 HOH A 59 359 39 HOH HOH . I 6 HOH A 60 360 17 HOH HOH . I 6 HOH A 61 361 7 HOH HOH . I 6 HOH A 62 362 108 HOH HOH . I 6 HOH A 63 363 144 HOH HOH . I 6 HOH A 64 364 11 HOH HOH . I 6 HOH A 65 365 24 HOH HOH . I 6 HOH A 66 366 88 HOH HOH . I 6 HOH A 67 367 106 HOH HOH . I 6 HOH A 68 368 125 HOH HOH . I 6 HOH A 69 369 157 HOH HOH . I 6 HOH A 70 370 53 HOH HOH . I 6 HOH A 71 371 116 HOH HOH . I 6 HOH A 72 372 22 HOH HOH . I 6 HOH A 73 373 35 HOH HOH . I 6 HOH A 74 374 50 HOH HOH . I 6 HOH A 75 375 43 HOH HOH . I 6 HOH A 76 376 172 HOH HOH . I 6 HOH A 77 377 42 HOH HOH . I 6 HOH A 78 378 140 HOH HOH . I 6 HOH A 79 379 89 HOH HOH . I 6 HOH A 80 380 2 HOH HOH . I 6 HOH A 81 381 161 HOH HOH . I 6 HOH A 82 382 38 HOH HOH . I 6 HOH A 83 383 54 HOH HOH . I 6 HOH A 84 384 121 HOH HOH . I 6 HOH A 85 385 52 HOH HOH . I 6 HOH A 86 386 186 HOH HOH . I 6 HOH A 87 387 82 HOH HOH . I 6 HOH A 88 388 174 HOH HOH . I 6 HOH A 89 389 71 HOH HOH . I 6 HOH A 90 390 98 HOH HOH . I 6 HOH A 91 391 130 HOH HOH . I 6 HOH A 92 392 96 HOH HOH . I 6 HOH A 93 393 155 HOH HOH . I 6 HOH A 94 394 181 HOH HOH . I 6 HOH A 95 395 110 HOH HOH . I 6 HOH A 96 396 146 HOH HOH . I 6 HOH A 97 397 170 HOH HOH . I 6 HOH A 98 398 159 HOH HOH . I 6 HOH A 99 399 178 HOH HOH . I 6 HOH A 100 400 145 HOH HOH . I 6 HOH A 101 401 169 HOH HOH . I 6 HOH A 102 402 44 HOH HOH . I 6 HOH A 103 403 168 HOH HOH . I 6 HOH A 104 404 175 HOH HOH . I 6 HOH A 105 405 139 HOH HOH . J 6 HOH B 1 301 49 HOH HOH . J 6 HOH B 2 302 48 HOH HOH . J 6 HOH B 3 303 171 HOH HOH . J 6 HOH B 4 304 138 HOH HOH . J 6 HOH B 5 305 160 HOH HOH . J 6 HOH B 6 306 153 HOH HOH . J 6 HOH B 7 307 29 HOH HOH . J 6 HOH B 8 308 20 HOH HOH . J 6 HOH B 9 309 99 HOH HOH . J 6 HOH B 10 310 47 HOH HOH . J 6 HOH B 11 311 180 HOH HOH . J 6 HOH B 12 312 46 HOH HOH . J 6 HOH B 13 313 151 HOH HOH . J 6 HOH B 14 314 32 HOH HOH . J 6 HOH B 15 315 90 HOH HOH . J 6 HOH B 16 316 114 HOH HOH . J 6 HOH B 17 317 97 HOH HOH . J 6 HOH B 18 318 14 HOH HOH . J 6 HOH B 19 319 59 HOH HOH . J 6 HOH B 20 320 33 HOH HOH . J 6 HOH B 21 321 55 HOH HOH . J 6 HOH B 22 322 57 HOH HOH . J 6 HOH B 23 323 68 HOH HOH . J 6 HOH B 24 324 5 HOH HOH . J 6 HOH B 25 325 27 HOH HOH . J 6 HOH B 26 326 184 HOH HOH . J 6 HOH B 27 327 26 HOH HOH . J 6 HOH B 28 328 21 HOH HOH . J 6 HOH B 29 329 131 HOH HOH . J 6 HOH B 30 330 77 HOH HOH . J 6 HOH B 31 331 13 HOH HOH . J 6 HOH B 32 332 28 HOH HOH . J 6 HOH B 33 333 81 HOH HOH . J 6 HOH B 34 334 41 HOH HOH . J 6 HOH B 35 335 124 HOH HOH . J 6 HOH B 36 336 70 HOH HOH . J 6 HOH B 37 337 1 HOH HOH . J 6 HOH B 38 338 80 HOH HOH . J 6 HOH B 39 339 74 HOH HOH . J 6 HOH B 40 340 30 HOH HOH . J 6 HOH B 41 341 67 HOH HOH . J 6 HOH B 42 342 10 HOH HOH . J 6 HOH B 43 343 101 HOH HOH . J 6 HOH B 44 344 105 HOH HOH . J 6 HOH B 45 345 18 HOH HOH . J 6 HOH B 46 346 177 HOH HOH . J 6 HOH B 47 347 69 HOH HOH . J 6 HOH B 48 348 31 HOH HOH . J 6 HOH B 49 349 37 HOH HOH . J 6 HOH B 50 350 9 HOH HOH . J 6 HOH B 51 351 133 HOH HOH . J 6 HOH B 52 352 65 HOH HOH . J 6 HOH B 53 353 134 HOH HOH . J 6 HOH B 54 354 135 HOH HOH . J 6 HOH B 55 355 8 HOH HOH . J 6 HOH B 56 356 148 HOH HOH . J 6 HOH B 57 357 94 HOH HOH . J 6 HOH B 58 358 123 HOH HOH . J 6 HOH B 59 359 87 HOH HOH . J 6 HOH B 60 360 76 HOH HOH . J 6 HOH B 61 361 166 HOH HOH . J 6 HOH B 62 362 122 HOH HOH . J 6 HOH B 63 363 62 HOH HOH . J 6 HOH B 64 364 165 HOH HOH . J 6 HOH B 65 365 141 HOH HOH . J 6 HOH B 66 366 183 HOH HOH . J 6 HOH B 67 367 111 HOH HOH . J 6 HOH B 68 368 176 HOH HOH . J 6 HOH B 69 369 56 HOH HOH . J 6 HOH B 70 370 103 HOH HOH . J 6 HOH B 71 371 154 HOH HOH . J 6 HOH B 72 372 167 HOH HOH . J 6 HOH B 73 373 187 HOH HOH . J 6 HOH B 74 374 164 HOH HOH . J 6 HOH B 75 375 127 HOH HOH . J 6 HOH B 76 376 109 HOH HOH . J 6 HOH B 77 377 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 4RG . . . G 4 31.978 -9.551 4.87 1 28.18 ? CAA 4RG 203 B 1 HETATM 2 C CAB 4RG . . . G 4 33.294 -10.299 4.889 1 41.77 ? CAB 4RG 203 B 1 HETATM 3 C CAC 4RG . . . G 4 34.176 -9.939 5.886 1 43.42 ? CAC 4RG 203 B 1 HETATM 4 C CAD 4RG . . . G 4 35.39 -10.574 5.981 1 49.61 ? CAD 4RG 203 B 1 HETATM 5 C CAE 4RG . . . G 4 35.725 -11.567 5.08 1 49.95 ? CAE 4RG 203 B 1 HETATM 6 C CAF 4RG . . . G 4 34.828 -11.927 4.087 1 51.48 ? CAF 4RG 203 B 1 HETATM 7 C CAG 4RG . . . G 4 33.603 -11.291 3.978 1 48.22 ? CAG 4RG 203 B 1 HETATM 8 O OAH 4RG . . . G 4 31.818 -8.712 5.789 1 21.84 ? OAH 4RG 203 B 1 HETATM 9 O OAI 4RG . . . G 4 31.098 -9.785 4.002 1 29.42 -1 OAI 4RG 203 B 1 HETATM 10 C CAJ 4RG . . . G 4 36.342 -10.148 7.088 1 51.31 ? CAJ 4RG 203 B 1 HETATM 11 O OAK 4RG . . . G 4 36.574 -8.788 6.872 1 46.77 ? OAK 4RG 203 B 1 HETATM 12 C CAL 4RG . . . G 4 37.503 -8.239 7.753 1 38.02 ? CAL 4RG 203 B 1 HETATM 13 C CAM 4RG . . . G 4 37.252 -7.007 8.331 1 36.28 ? CAM 4RG 203 B 1 HETATM 14 C CAN 4RG . . . G 4 38.174 -6.463 9.206 1 35.1 ? CAN 4RG 203 B 1 HETATM 15 C CAO 4RG . . . G 4 39.334 -7.162 9.497 1 26.86 ? CAO 4RG 203 B 1 HETATM 16 C CAP 4RG . . . G 4 39.582 -8.393 8.917 1 25.2 ? CAP 4RG 203 B 1 HETATM 17 C CAQ 4RG . . . G 4 38.661 -8.938 8.043 1 32.72 ? CAQ 4RG 203 B 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 17 #