data_6VSG # _model_server_result.job_id QhJwgYSqCwZ6DsAsY-vWxA _model_server_result.datetime_utc '2024-11-27 06:05:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vsg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 6VSG # _exptl.entry_id 6VSG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VSG _cell.length_a 60.912 _cell.length_b 70.701 _cell.length_c 72.135 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VSG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,I 1 1 B,H,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 40 A HIS 38 1_555 D CO CO . A CO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc2 A NE2 HIS 159 A HIS 157 1_555 C CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc3 C CO CO . A CO 201 1_555 B NE2 HIS 40 B HIS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc4 C CO CO . A CO 201 1_555 J O HOH . B HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc5 C CO CO . A CO 201 1_555 J O HOH . B HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc6 C CO CO . A CO 201 1_555 J O HOH . B HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc7 C CO CO . A CO 201 1_555 J O HOH . B HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc8 D CO CO . A CO 202 1_555 I O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc9 D CO CO . A CO 202 1_555 I O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc10 D CO CO . A CO 202 1_555 I O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc11 D CO CO . A CO 202 1_555 J O HOH . B HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc12 D CO CO . A CO 202 1_555 J O HOH . B HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6VSG _atom_sites.fract_transf_matrix[1][1] 0.016417 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 201 1 CO CO . D 2 CO A 1 202 2 CO CO . E 3 X0V A 1 203 1 X0V LIG . F 4 GOL A 1 204 1 GOL GOL . G 5 NAP A 1 205 2 NAP NDP . H 5 NAP B 1 201 1 NAP NDP . I 6 HOH A 1 301 73 HOH HOH . I 6 HOH A 2 302 147 HOH HOH . I 6 HOH A 3 303 41 HOH HOH . I 6 HOH A 4 304 99 HOH HOH . I 6 HOH A 5 305 39 HOH HOH . I 6 HOH A 6 306 18 HOH HOH . I 6 HOH A 7 307 9 HOH HOH . I 6 HOH A 8 308 10 HOH HOH . I 6 HOH A 9 309 104 HOH HOH . I 6 HOH A 10 310 53 HOH HOH . I 6 HOH A 11 311 94 HOH HOH . I 6 HOH A 12 312 174 HOH HOH . I 6 HOH A 13 313 97 HOH HOH . I 6 HOH A 14 314 16 HOH HOH . I 6 HOH A 15 315 120 HOH HOH . I 6 HOH A 16 316 184 HOH HOH . I 6 HOH A 17 317 5 HOH HOH . I 6 HOH A 18 318 115 HOH HOH . I 6 HOH A 19 319 28 HOH HOH . I 6 HOH A 20 320 65 HOH HOH . I 6 HOH A 21 321 19 HOH HOH . I 6 HOH A 22 322 155 HOH HOH . I 6 HOH A 23 323 148 HOH HOH . I 6 HOH A 24 324 22 HOH HOH . I 6 HOH A 25 325 14 HOH HOH . I 6 HOH A 26 326 56 HOH HOH . I 6 HOH A 27 327 67 HOH HOH . I 6 HOH A 28 328 45 HOH HOH . I 6 HOH A 29 329 8 HOH HOH . I 6 HOH A 30 330 25 HOH HOH . I 6 HOH A 31 331 87 HOH HOH . I 6 HOH A 32 332 20 HOH HOH . I 6 HOH A 33 333 161 HOH HOH . I 6 HOH A 34 334 88 HOH HOH . I 6 HOH A 35 335 78 HOH HOH . I 6 HOH A 36 336 109 HOH HOH . I 6 HOH A 37 337 166 HOH HOH . I 6 HOH A 38 338 153 HOH HOH . I 6 HOH A 39 339 46 HOH HOH . I 6 HOH A 40 340 6 HOH HOH . I 6 HOH A 41 341 163 HOH HOH . I 6 HOH A 42 342 112 HOH HOH . I 6 HOH A 43 343 80 HOH HOH . I 6 HOH A 44 344 47 HOH HOH . I 6 HOH A 45 345 1 HOH HOH . I 6 HOH A 46 346 182 HOH HOH . I 6 HOH A 47 347 168 HOH HOH . I 6 HOH A 48 348 54 HOH HOH . I 6 HOH A 49 349 111 HOH HOH . I 6 HOH A 50 350 114 HOH HOH . I 6 HOH A 51 351 180 HOH HOH . I 6 HOH A 52 352 181 HOH HOH . I 6 HOH A 53 353 23 HOH HOH . I 6 HOH A 54 354 70 HOH HOH . I 6 HOH A 55 355 176 HOH HOH . I 6 HOH A 56 356 172 HOH HOH . I 6 HOH A 57 357 61 HOH HOH . I 6 HOH A 58 358 95 HOH HOH . I 6 HOH A 59 359 123 HOH HOH . I 6 HOH A 60 360 90 HOH HOH . I 6 HOH A 61 361 138 HOH HOH . I 6 HOH A 62 362 76 HOH HOH . I 6 HOH A 63 363 92 HOH HOH . I 6 HOH A 64 364 140 HOH HOH . I 6 HOH A 65 365 62 HOH HOH . I 6 HOH A 66 366 144 HOH HOH . I 6 HOH A 67 367 124 HOH HOH . I 6 HOH A 68 368 192 HOH HOH . I 6 HOH A 69 369 195 HOH HOH . I 6 HOH A 70 370 191 HOH HOH . I 6 HOH A 71 371 63 HOH HOH . I 6 HOH A 72 372 162 HOH HOH . I 6 HOH A 73 373 152 HOH HOH . I 6 HOH A 74 374 121 HOH HOH . I 6 HOH A 75 375 69 HOH HOH . I 6 HOH A 76 376 160 HOH HOH . I 6 HOH A 77 377 142 HOH HOH . I 6 HOH A 78 378 177 HOH HOH . I 6 HOH A 79 379 157 HOH HOH . I 6 HOH A 80 380 68 HOH HOH . I 6 HOH A 81 381 165 HOH HOH . I 6 HOH A 82 382 170 HOH HOH . I 6 HOH A 83 383 82 HOH HOH . I 6 HOH A 84 384 116 HOH HOH . I 6 HOH A 85 385 154 HOH HOH . I 6 HOH A 86 386 40 HOH HOH . I 6 HOH A 87 387 194 HOH HOH . I 6 HOH A 88 388 178 HOH HOH . I 6 HOH A 89 389 100 HOH HOH . I 6 HOH A 90 390 102 HOH HOH . J 6 HOH B 1 301 38 HOH HOH . J 6 HOH B 2 302 143 HOH HOH . J 6 HOH B 3 303 83 HOH HOH . J 6 HOH B 4 304 136 HOH HOH . J 6 HOH B 5 305 3 HOH HOH . J 6 HOH B 6 306 52 HOH HOH . J 6 HOH B 7 307 159 HOH HOH . J 6 HOH B 8 308 26 HOH HOH . J 6 HOH B 9 309 36 HOH HOH . J 6 HOH B 10 310 167 HOH HOH . J 6 HOH B 11 311 60 HOH HOH . J 6 HOH B 12 312 59 HOH HOH . J 6 HOH B 13 313 74 HOH HOH . J 6 HOH B 14 314 17 HOH HOH . J 6 HOH B 15 315 186 HOH HOH . J 6 HOH B 16 316 196 HOH HOH . J 6 HOH B 17 317 101 HOH HOH . J 6 HOH B 18 318 32 HOH HOH . J 6 HOH B 19 319 35 HOH HOH . J 6 HOH B 20 320 75 HOH HOH . J 6 HOH B 21 321 33 HOH HOH . J 6 HOH B 22 322 55 HOH HOH . J 6 HOH B 23 323 77 HOH HOH . J 6 HOH B 24 324 84 HOH HOH . J 6 HOH B 25 325 12 HOH HOH . J 6 HOH B 26 326 131 HOH HOH . J 6 HOH B 27 327 190 HOH HOH . J 6 HOH B 28 328 145 HOH HOH . J 6 HOH B 29 329 13 HOH HOH . J 6 HOH B 30 330 27 HOH HOH . J 6 HOH B 31 331 44 HOH HOH . J 6 HOH B 32 332 79 HOH HOH . J 6 HOH B 33 333 2 HOH HOH . J 6 HOH B 34 334 137 HOH HOH . J 6 HOH B 35 335 11 HOH HOH . J 6 HOH B 36 336 57 HOH HOH . J 6 HOH B 37 337 72 HOH HOH . J 6 HOH B 38 338 188 HOH HOH . J 6 HOH B 39 339 130 HOH HOH . J 6 HOH B 40 340 15 HOH HOH . J 6 HOH B 41 341 113 HOH HOH . J 6 HOH B 42 342 81 HOH HOH . J 6 HOH B 43 343 149 HOH HOH . J 6 HOH B 44 344 31 HOH HOH . J 6 HOH B 45 345 29 HOH HOH . J 6 HOH B 46 346 30 HOH HOH . J 6 HOH B 47 347 103 HOH HOH . J 6 HOH B 48 348 151 HOH HOH . J 6 HOH B 49 349 141 HOH HOH . J 6 HOH B 50 350 49 HOH HOH . J 6 HOH B 51 351 86 HOH HOH . J 6 HOH B 52 352 85 HOH HOH . J 6 HOH B 53 353 183 HOH HOH . J 6 HOH B 54 354 164 HOH HOH . J 6 HOH B 55 355 64 HOH HOH . J 6 HOH B 56 356 58 HOH HOH . J 6 HOH B 57 357 135 HOH HOH . J 6 HOH B 58 358 198 HOH HOH . J 6 HOH B 59 359 4 HOH HOH . J 6 HOH B 60 360 71 HOH HOH . J 6 HOH B 61 361 21 HOH HOH . J 6 HOH B 62 362 150 HOH HOH . J 6 HOH B 63 363 132 HOH HOH . J 6 HOH B 64 364 50 HOH HOH . J 6 HOH B 65 365 108 HOH HOH . J 6 HOH B 66 366 171 HOH HOH . J 6 HOH B 67 367 187 HOH HOH . J 6 HOH B 68 368 7 HOH HOH . J 6 HOH B 69 369 48 HOH HOH . J 6 HOH B 70 370 34 HOH HOH . J 6 HOH B 71 371 107 HOH HOH . J 6 HOH B 72 372 179 HOH HOH . J 6 HOH B 73 373 200 HOH HOH . J 6 HOH B 74 374 106 HOH HOH . J 6 HOH B 75 375 105 HOH HOH . J 6 HOH B 76 376 193 HOH HOH . J 6 HOH B 77 377 51 HOH HOH . J 6 HOH B 78 378 91 HOH HOH . J 6 HOH B 79 379 122 HOH HOH . J 6 HOH B 80 380 175 HOH HOH . J 6 HOH B 81 381 43 HOH HOH . J 6 HOH B 82 382 37 HOH HOH . J 6 HOH B 83 383 89 HOH HOH . J 6 HOH B 84 384 158 HOH HOH . J 6 HOH B 85 385 197 HOH HOH . J 6 HOH B 86 386 93 HOH HOH . J 6 HOH B 87 387 24 HOH HOH . J 6 HOH B 88 388 146 HOH HOH . J 6 HOH B 89 389 127 HOH HOH . J 6 HOH B 90 390 126 HOH HOH . J 6 HOH B 91 391 189 HOH HOH . J 6 HOH B 92 392 199 HOH HOH . J 6 HOH B 93 393 96 HOH HOH . J 6 HOH B 94 394 169 HOH HOH . J 6 HOH B 95 395 119 HOH HOH . J 6 HOH B 96 396 173 HOH HOH . J 6 HOH B 97 397 128 HOH HOH . J 6 HOH B 98 398 134 HOH HOH . J 6 HOH B 99 399 185 HOH HOH . J 6 HOH B 100 400 117 HOH HOH . J 6 HOH B 101 401 42 HOH HOH . J 6 HOH B 102 402 110 HOH HOH . J 6 HOH B 103 403 66 HOH HOH . J 6 HOH B 104 404 156 HOH HOH . J 6 HOH B 105 405 125 HOH HOH . J 6 HOH B 106 406 118 HOH HOH . J 6 HOH B 107 407 139 HOH HOH . J 6 HOH B 108 408 133 HOH HOH . J 6 HOH B 109 409 98 HOH HOH . J 6 HOH B 110 410 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 66.969 84.812 22.813 1 49.64 ? C1 GOL 204 A 1 HETATM 2 O O1 GOL . . . F 4 66.847 85.377 24.099 1 49.78 ? O1 GOL 204 A 1 HETATM 3 C C2 GOL . . . F 4 67.233 83.322 22.9 1 54.8 ? C2 GOL 204 A 1 HETATM 4 O O2 GOL . . . F 4 68.559 83.175 23.347 1 62.21 ? O2 GOL 204 A 1 HETATM 5 C C3 GOL . . . F 4 67.124 82.704 21.506 1 51.73 ? C3 GOL 204 A 1 HETATM 6 O O3 GOL . . . F 4 65.837 82.865 20.952 1 52.08 ? O3 GOL 204 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #