data_6VTE # _model_server_result.job_id qK3pAPhbZZXtzpabgqPnJA _model_server_result.datetime_utc '2024-12-18 10:17:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vte # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6VTE # _exptl.entry_id 6VTE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6VTE _cell.length_a 54.916 _cell.length_b 54.916 _cell.length_c 102.244 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O3P AMP . A AMP 401 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc2 C MN MN . A MN 402 1_555 D O HOH . A HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc3 C MN MN . A MN 402 1_555 D O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc4 C MN MN . A MN 402 1_555 D O HOH . A HOH 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc5 C MN MN . A MN 402 1_555 D O HOH . A HOH 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc6 C MN MN . A MN 402 1_555 D O HOH . A HOH 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 6VTE _atom_sites.fract_transf_matrix[1][1] 0.01821 _atom_sites.fract_transf_matrix[1][2] 0.010513 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009781 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 401 401 AMP AMP . C 3 MN A 1 402 1 MN MN . D 4 HOH A 1 501 101 HOH HOH . D 4 HOH A 2 502 137 HOH HOH . D 4 HOH A 3 503 174 HOH HOH . D 4 HOH A 4 504 42 HOH HOH . D 4 HOH A 5 505 97 HOH HOH . D 4 HOH A 6 506 185 HOH HOH . D 4 HOH A 7 507 163 HOH HOH . D 4 HOH A 8 508 160 HOH HOH . D 4 HOH A 9 509 158 HOH HOH . D 4 HOH A 10 510 63 HOH HOH . D 4 HOH A 11 511 139 HOH HOH . D 4 HOH A 12 512 40 HOH HOH . D 4 HOH A 13 513 18 HOH HOH . D 4 HOH A 14 514 11 HOH HOH . D 4 HOH A 15 515 142 HOH HOH . D 4 HOH A 16 516 89 HOH HOH . D 4 HOH A 17 517 193 HOH HOH . D 4 HOH A 18 518 49 HOH HOH . D 4 HOH A 19 519 55 HOH HOH . D 4 HOH A 20 520 151 HOH HOH . D 4 HOH A 21 521 87 HOH HOH . D 4 HOH A 22 522 25 HOH HOH . D 4 HOH A 23 523 37 HOH HOH . D 4 HOH A 24 524 38 HOH HOH . D 4 HOH A 25 525 112 HOH HOH . D 4 HOH A 26 526 109 HOH HOH . D 4 HOH A 27 527 96 HOH HOH . D 4 HOH A 28 528 184 HOH HOH . D 4 HOH A 29 529 29 HOH HOH . D 4 HOH A 30 530 144 HOH HOH . D 4 HOH A 31 531 189 HOH HOH . D 4 HOH A 32 532 135 HOH HOH . D 4 HOH A 33 533 60 HOH HOH . D 4 HOH A 34 534 79 HOH HOH . D 4 HOH A 35 535 84 HOH HOH . D 4 HOH A 36 536 161 HOH HOH . D 4 HOH A 37 537 129 HOH HOH . D 4 HOH A 38 538 100 HOH HOH . D 4 HOH A 39 539 103 HOH HOH . D 4 HOH A 40 540 58 HOH HOH . D 4 HOH A 41 541 56 HOH HOH . D 4 HOH A 42 542 106 HOH HOH . D 4 HOH A 43 543 47 HOH HOH . D 4 HOH A 44 544 48 HOH HOH . D 4 HOH A 45 545 192 HOH HOH . D 4 HOH A 46 546 173 HOH HOH . D 4 HOH A 47 547 116 HOH HOH . D 4 HOH A 48 548 14 HOH HOH . D 4 HOH A 49 549 59 HOH HOH . D 4 HOH A 50 550 167 HOH HOH . D 4 HOH A 51 551 83 HOH HOH . D 4 HOH A 52 552 19 HOH HOH . D 4 HOH A 53 553 8 HOH HOH . D 4 HOH A 54 554 115 HOH HOH . D 4 HOH A 55 555 169 HOH HOH . D 4 HOH A 56 556 182 HOH HOH . D 4 HOH A 57 557 74 HOH HOH . D 4 HOH A 58 558 125 HOH HOH . D 4 HOH A 59 559 175 HOH HOH . D 4 HOH A 60 560 3 HOH HOH . D 4 HOH A 61 561 31 HOH HOH . D 4 HOH A 62 562 2 HOH HOH . D 4 HOH A 63 563 24 HOH HOH . D 4 HOH A 64 564 1 HOH HOH . D 4 HOH A 65 565 57 HOH HOH . D 4 HOH A 66 566 44 HOH HOH . D 4 HOH A 67 567 105 HOH HOH . D 4 HOH A 68 568 21 HOH HOH . D 4 HOH A 69 569 6 HOH HOH . D 4 HOH A 70 570 152 HOH HOH . D 4 HOH A 71 571 9 HOH HOH . D 4 HOH A 72 572 62 HOH HOH . D 4 HOH A 73 573 43 HOH HOH . D 4 HOH A 74 574 4 HOH HOH . D 4 HOH A 75 575 26 HOH HOH . D 4 HOH A 76 576 85 HOH HOH . D 4 HOH A 77 577 16 HOH HOH . D 4 HOH A 78 578 5 HOH HOH . D 4 HOH A 79 579 54 HOH HOH . D 4 HOH A 80 580 75 HOH HOH . D 4 HOH A 81 581 171 HOH HOH . D 4 HOH A 82 582 146 HOH HOH . D 4 HOH A 83 583 52 HOH HOH . D 4 HOH A 84 584 34 HOH HOH . D 4 HOH A 85 585 7 HOH HOH . D 4 HOH A 86 586 71 HOH HOH . D 4 HOH A 87 587 136 HOH HOH . D 4 HOH A 88 588 17 HOH HOH . D 4 HOH A 89 589 145 HOH HOH . D 4 HOH A 90 590 187 HOH HOH . D 4 HOH A 91 591 36 HOH HOH . D 4 HOH A 92 592 22 HOH HOH . D 4 HOH A 93 593 30 HOH HOH . D 4 HOH A 94 594 95 HOH HOH . D 4 HOH A 95 595 123 HOH HOH . D 4 HOH A 96 596 114 HOH HOH . D 4 HOH A 97 597 102 HOH HOH . D 4 HOH A 98 598 90 HOH HOH . D 4 HOH A 99 599 67 HOH HOH . D 4 HOH A 100 600 107 HOH HOH . D 4 HOH A 101 601 154 HOH HOH . D 4 HOH A 102 602 78 HOH HOH . D 4 HOH A 103 603 120 HOH HOH . D 4 HOH A 104 604 72 HOH HOH . D 4 HOH A 105 605 86 HOH HOH . D 4 HOH A 106 606 46 HOH HOH . D 4 HOH A 107 607 91 HOH HOH . D 4 HOH A 108 608 13 HOH HOH . D 4 HOH A 109 609 61 HOH HOH . D 4 HOH A 110 610 81 HOH HOH . D 4 HOH A 111 611 94 HOH HOH . D 4 HOH A 112 612 27 HOH HOH . D 4 HOH A 113 613 33 HOH HOH . D 4 HOH A 114 614 132 HOH HOH . D 4 HOH A 115 615 150 HOH HOH . D 4 HOH A 116 616 88 HOH HOH . D 4 HOH A 117 617 51 HOH HOH . D 4 HOH A 118 618 172 HOH HOH . D 4 HOH A 119 619 118 HOH HOH . D 4 HOH A 120 620 12 HOH HOH . D 4 HOH A 121 621 164 HOH HOH . D 4 HOH A 122 622 122 HOH HOH . D 4 HOH A 123 623 45 HOH HOH . D 4 HOH A 124 624 165 HOH HOH . D 4 HOH A 125 625 134 HOH HOH . D 4 HOH A 126 626 155 HOH HOH . D 4 HOH A 127 627 168 HOH HOH . D 4 HOH A 128 628 23 HOH HOH . D 4 HOH A 129 629 77 HOH HOH . D 4 HOH A 130 630 53 HOH HOH . D 4 HOH A 131 631 35 HOH HOH . D 4 HOH A 132 632 98 HOH HOH . D 4 HOH A 133 633 70 HOH HOH . D 4 HOH A 134 634 15 HOH HOH . D 4 HOH A 135 635 180 HOH HOH . D 4 HOH A 136 636 39 HOH HOH . D 4 HOH A 137 637 69 HOH HOH . D 4 HOH A 138 638 181 HOH HOH . D 4 HOH A 139 639 28 HOH HOH . D 4 HOH A 140 640 41 HOH HOH . D 4 HOH A 141 641 162 HOH HOH . D 4 HOH A 142 642 183 HOH HOH . D 4 HOH A 143 643 140 HOH HOH . D 4 HOH A 144 644 32 HOH HOH . D 4 HOH A 145 645 141 HOH HOH . D 4 HOH A 146 646 113 HOH HOH . D 4 HOH A 147 647 179 HOH HOH . D 4 HOH A 148 648 10 HOH HOH . D 4 HOH A 149 649 50 HOH HOH . D 4 HOH A 150 650 188 HOH HOH . D 4 HOH A 151 651 166 HOH HOH . D 4 HOH A 152 652 190 HOH HOH . D 4 HOH A 153 653 127 HOH HOH . D 4 HOH A 154 654 80 HOH HOH . D 4 HOH A 155 655 131 HOH HOH . D 4 HOH A 156 656 65 HOH HOH . D 4 HOH A 157 657 76 HOH HOH . D 4 HOH A 158 658 117 HOH HOH . D 4 HOH A 159 659 148 HOH HOH . D 4 HOH A 160 660 108 HOH HOH . D 4 HOH A 161 661 66 HOH HOH . D 4 HOH A 162 662 73 HOH HOH . D 4 HOH A 163 663 104 HOH HOH . D 4 HOH A 164 664 178 HOH HOH . D 4 HOH A 165 665 111 HOH HOH . D 4 HOH A 166 666 159 HOH HOH . D 4 HOH A 167 667 64 HOH HOH . D 4 HOH A 168 668 170 HOH HOH . D 4 HOH A 169 669 119 HOH HOH . D 4 HOH A 170 670 20 HOH HOH . D 4 HOH A 171 671 121 HOH HOH . D 4 HOH A 172 672 124 HOH HOH . D 4 HOH A 173 673 126 HOH HOH . D 4 HOH A 174 674 157 HOH HOH . D 4 HOH A 175 675 68 HOH HOH . D 4 HOH A 176 676 149 HOH HOH . D 4 HOH A 177 677 128 HOH HOH . D 4 HOH A 178 678 147 HOH HOH . D 4 HOH A 179 679 186 HOH HOH . D 4 HOH A 180 680 156 HOH HOH . D 4 HOH A 181 681 93 HOH HOH . D 4 HOH A 182 682 176 HOH HOH . D 4 HOH A 183 683 82 HOH HOH . D 4 HOH A 184 684 143 HOH HOH . D 4 HOH A 185 685 92 HOH HOH . D 4 HOH A 186 686 194 HOH HOH . D 4 HOH A 187 687 138 HOH HOH . D 4 HOH A 188 688 99 HOH HOH . D 4 HOH A 189 689 110 HOH HOH . D 4 HOH A 190 690 191 HOH HOH . D 4 HOH A 191 691 153 HOH HOH . D 4 HOH A 192 692 130 HOH HOH . D 4 HOH A 193 693 133 HOH HOH . D 4 HOH A 194 694 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 -14.244 -11.625 -9.066 1 57.81 ? P AMP 401 A 1 HETATM 2 O O1P AMP . . . B 2 -15.128 -12.35 -10.051 1 65.14 ? O1P AMP 401 A 1 HETATM 3 O O2P AMP . . . B 2 -13.202 -12.502 -8.41 1 57.12 ? O2P AMP 401 A 1 HETATM 4 O O3P AMP . . . B 2 -13.647 -10.366 -9.662 1 38.32 ? O3P AMP 401 A 1 HETATM 5 O O5' AMP . . . B 2 -15.239 -11.4 -7.821 1 49.47 ? O5' AMP 401 A 1 HETATM 6 C C5' AMP . . . B 2 -15.967 -10.201 -7.587 1 35.76 ? C5' AMP 401 A 1 HETATM 7 C C4' AMP . . . B 2 -15.079 -8.987 -7.503 1 30.57 ? C4' AMP 401 A 1 HETATM 8 O O4' AMP . . . B 2 -15.566 -8.01 -8.433 1 27.65 ? O4' AMP 401 A 1 HETATM 9 C C3' AMP . . . B 2 -15.051 -8.251 -6.177 1 33.15 ? C3' AMP 401 A 1 HETATM 10 O O3' AMP . . . B 2 -14.084 -8.788 -5.301 1 34.59 ? O3' AMP 401 A 1 HETATM 11 C C2' AMP . . . B 2 -14.715 -6.812 -6.564 1 28.86 ? C2' AMP 401 A 1 HETATM 12 O O2' AMP . . . B 2 -13.301 -6.637 -6.579 1 24.92 ? O2' AMP 401 A 1 HETATM 13 C C1' AMP . . . B 2 -15.206 -6.723 -8.008 1 23.06 ? C1' AMP 401 A 1 HETATM 14 N N9 AMP . . . B 2 -16.386 -5.872 -8.193 1 20.68 ? N9 AMP 401 A 1 HETATM 15 C C8 AMP . . . B 2 -16.482 -5.051 -9.241 1 23.65 ? C8 AMP 401 A 1 HETATM 16 N N7 AMP . . . B 2 -17.659 -4.395 -9.258 1 27 ? N7 AMP 401 A 1 HETATM 17 C C5 AMP . . . B 2 -18.34 -4.814 -8.189 1 24.09 ? C5 AMP 401 A 1 HETATM 18 C C6 AMP . . . B 2 -19.658 -4.494 -7.665 1 25.38 ? C6 AMP 401 A 1 HETATM 19 N N6 AMP . . . B 2 -20.426 -3.578 -8.321 1 27.08 ? N6 AMP 401 A 1 HETATM 20 N N1 AMP . . . B 2 -20.04 -5.127 -6.537 1 31.08 ? N1 AMP 401 A 1 HETATM 21 C C2 AMP . . . B 2 -19.247 -6.032 -5.937 1 30.57 ? C2 AMP 401 A 1 HETATM 22 N N3 AMP . . . B 2 -18.024 -6.368 -6.373 1 27.86 ? N3 AMP 401 A 1 HETATM 23 C C4 AMP . . . B 2 -17.519 -5.8 -7.484 1 24.4 ? C4 AMP 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #