data_6VTN # _model_server_result.job_id wORJKRCbY0tJWRezj0HUdw _model_server_result.datetime_utc '2024-10-18 04:23:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vtn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 6VTN # _exptl.entry_id 6VTN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6VTN _cell.length_a 84.751 _cell.length_b 84.751 _cell.length_c 137.959 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VTN _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall 'P 64' _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6VTN _atom_sites.fract_transf_matrix[1][1] 0.011799 _atom_sites.fract_transf_matrix[1][2] 0.006812 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007249 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RL7 A 1 1001 1001 RL7 557 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 HOH A 1 1101 11 HOH HOH . E 5 HOH A 2 1102 17 HOH HOH . E 5 HOH A 3 1103 3 HOH HOH . E 5 HOH A 4 1104 18 HOH HOH . E 5 HOH A 5 1105 28 HOH HOH . E 5 HOH A 6 1106 60 HOH HOH . E 5 HOH A 7 1107 8 HOH HOH . E 5 HOH A 8 1108 14 HOH HOH . E 5 HOH A 9 1109 39 HOH HOH . E 5 HOH A 10 1110 40 HOH HOH . E 5 HOH A 11 1111 55 HOH HOH . E 5 HOH A 12 1112 29 HOH HOH . E 5 HOH A 13 1113 5 HOH HOH . E 5 HOH A 14 1114 57 HOH HOH . E 5 HOH A 15 1115 13 HOH HOH . E 5 HOH A 16 1116 48 HOH HOH . E 5 HOH A 17 1117 66 HOH HOH . E 5 HOH A 18 1118 19 HOH HOH . E 5 HOH A 19 1119 53 HOH HOH . E 5 HOH A 20 1120 2 HOH HOH . E 5 HOH A 21 1121 16 HOH HOH . E 5 HOH A 22 1122 30 HOH HOH . E 5 HOH A 23 1123 20 HOH HOH . E 5 HOH A 24 1124 62 HOH HOH . E 5 HOH A 25 1125 78 HOH HOH . E 5 HOH A 26 1126 15 HOH HOH . E 5 HOH A 27 1127 1 HOH HOH . E 5 HOH A 28 1128 7 HOH HOH . E 5 HOH A 29 1129 61 HOH HOH . E 5 HOH A 30 1130 10 HOH HOH . E 5 HOH A 31 1131 41 HOH HOH . E 5 HOH A 32 1132 12 HOH HOH . E 5 HOH A 33 1133 56 HOH HOH . E 5 HOH A 34 1134 70 HOH HOH . E 5 HOH A 35 1135 23 HOH HOH . E 5 HOH A 36 1136 25 HOH HOH . E 5 HOH A 37 1137 27 HOH HOH . E 5 HOH A 38 1138 9 HOH HOH . E 5 HOH A 39 1139 31 HOH HOH . E 5 HOH A 40 1140 54 HOH HOH . E 5 HOH A 41 1141 6 HOH HOH . E 5 HOH A 42 1142 4 HOH HOH . E 5 HOH A 43 1143 77 HOH HOH . E 5 HOH A 44 1144 43 HOH HOH . E 5 HOH A 45 1145 45 HOH HOH . E 5 HOH A 46 1146 75 HOH HOH . E 5 HOH A 47 1147 68 HOH HOH . E 5 HOH A 48 1148 69 HOH HOH . E 5 HOH A 49 1149 35 HOH HOH . E 5 HOH A 50 1150 49 HOH HOH . E 5 HOH A 51 1151 59 HOH HOH . E 5 HOH A 52 1152 46 HOH HOH . E 5 HOH A 53 1153 36 HOH HOH . E 5 HOH A 54 1154 26 HOH HOH . E 5 HOH A 55 1155 34 HOH HOH . E 5 HOH A 56 1156 52 HOH HOH . E 5 HOH A 57 1157 51 HOH HOH . E 5 HOH A 58 1158 79 HOH HOH . E 5 HOH A 59 1159 22 HOH HOH . E 5 HOH A 60 1160 33 HOH HOH . E 5 HOH A 61 1161 58 HOH HOH . E 5 HOH A 62 1162 47 HOH HOH . E 5 HOH A 63 1163 71 HOH HOH . E 5 HOH A 64 1164 24 HOH HOH . E 5 HOH A 65 1165 44 HOH HOH . E 5 HOH A 66 1166 37 HOH HOH . E 5 HOH A 67 1167 50 HOH HOH . E 5 HOH A 68 1168 38 HOH HOH . E 5 HOH A 69 1169 67 HOH HOH . E 5 HOH A 70 1170 64 HOH HOH . E 5 HOH A 71 1171 80 HOH HOH . E 5 HOH A 72 1172 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 81.343 -21.219 4.439 1 7.95 ? N1 FMN 1002 A 1 HETATM 2 C C2 FMN . . . C 3 81.861 -20.219 3.648 1 12.76 ? C2 FMN 1002 A 1 HETATM 3 O O2 FMN . . . C 3 81.593 -20.192 2.449 1 10.61 ? O2 FMN 1002 A 1 HETATM 4 N N3 FMN . . . C 3 82.677 -19.256 4.204 1 10.27 ? N3 FMN 1002 A 1 HETATM 5 C C4 FMN . . . C 3 82.971 -19.296 5.552 1 13.94 ? C4 FMN 1002 A 1 HETATM 6 O O4 FMN . . . C 3 83.696 -18.44 6.055 1 18.45 ? O4 FMN 1002 A 1 HETATM 7 C C4A FMN . . . C 3 82.442 -20.304 6.347 1 12.53 ? C4A FMN 1002 A 1 HETATM 8 N N5 FMN . . . C 3 82.723 -20.34 7.695 1 13.35 ? N5 FMN 1002 A 1 HETATM 9 C C5A FMN . . . C 3 82.212 -21.347 8.481 1 13.26 ? C5A FMN 1002 A 1 HETATM 10 C C6 FMN . . . C 3 82.512 -21.377 9.838 1 13.69 ? C6 FMN 1002 A 1 HETATM 11 C C7 FMN . . . C 3 81.983 -22.379 10.644 1 12.24 ? C7 FMN 1002 A 1 HETATM 12 C C7M FMN . . . C 3 82.325 -22.403 12.102 1 17.16 ? C7M FMN 1002 A 1 HETATM 13 C C8 FMN . . . C 3 81.161 -23.356 10.085 1 11.68 ? C8 FMN 1002 A 1 HETATM 14 C C8M FMN . . . C 3 80.576 -24.45 10.925 1 21.94 ? C8M FMN 1002 A 1 HETATM 15 C C9 FMN . . . C 3 80.862 -23.318 8.728 1 8.06 ? C9 FMN 1002 A 1 HETATM 16 C C9A FMN . . . C 3 81.388 -22.316 7.919 1 8.41 ? C9A FMN 1002 A 1 HETATM 17 N N10 FMN . . . C 3 81.098 -22.281 6.566 1 6.42 ? N10 FMN 1002 A 1 HETATM 18 C C10 FMN . . . C 3 81.626 -21.273 5.785 1 6.77 ? C10 FMN 1002 A 1 HETATM 19 C C1' FMN . . . C 3 80.202 -23.314 5.939 1 17.96 ? C1' FMN 1002 A 1 HETATM 20 C C2' FMN . . . C 3 81.004 -24.572 5.621 1 21.31 ? C2' FMN 1002 A 1 HETATM 21 O O2' FMN . . . C 3 82.056 -24.229 4.742 1 16.2 ? O2' FMN 1002 A 1 HETATM 22 C C3' FMN . . . C 3 80.159 -25.679 4.995 1 14.91 ? C3' FMN 1002 A 1 HETATM 23 O O3' FMN . . . C 3 79.579 -25.196 3.806 1 25.3 ? O3' FMN 1002 A 1 HETATM 24 C C4' FMN . . . C 3 79.07 -26.137 5.954 1 18.74 ? C4' FMN 1002 A 1 HETATM 25 O O4' FMN . . . C 3 79.601 -26.221 7.263 1 22.82 ? O4' FMN 1002 A 1 HETATM 26 C C5' FMN . . . C 3 78.457 -27.482 5.584 1 21.95 ? C5' FMN 1002 A 1 HETATM 27 O O5' FMN . . . C 3 79.433 -28.497 5.603 1 23.43 ? O5' FMN 1002 A 1 HETATM 28 P P FMN . . . C 3 79.346 -29.689 6.684 1 31.78 ? P FMN 1002 A 1 HETATM 29 O O1P FMN . . . C 3 79.893 -29.157 7.986 1 20.25 ? O1P FMN 1002 A 1 HETATM 30 O O2P FMN . . . C 3 80.168 -30.872 6.233 1 37.86 ? O2P FMN 1002 A 1 HETATM 31 O O3P FMN . . . C 3 77.911 -30.116 6.886 1 27.27 ? O3P FMN 1002 A 1 HETATM 32 H HN3 FMN . . . C 3 83.071 -18.5 3.608 1 12.32 ? HN3 FMN 1002 A 1 HETATM 33 H H6 FMN . . . C 3 83.161 -20.615 10.27 1 16.43 ? H6 FMN 1002 A 1 HETATM 34 H HM71 FMN . . . C 3 82.329 -23.433 12.458 1 20.59 ? HM71 FMN 1002 A 1 HETATM 35 H HM72 FMN . . . C 3 83.312 -21.963 12.251 1 20.59 ? HM72 FMN 1002 A 1 HETATM 36 H HM73 FMN . . . C 3 81.584 -21.829 12.658 1 20.59 ? HM73 FMN 1002 A 1 HETATM 37 H HM81 FMN . . . C 3 79.897 -25.05 10.319 1 26.33 ? HM81 FMN 1002 A 1 HETATM 38 H HM82 FMN . . . C 3 80.028 -24.014 11.76 1 26.33 ? HM82 FMN 1002 A 1 HETATM 39 H HM83 FMN . . . C 3 81.377 -25.083 11.307 1 26.33 ? HM83 FMN 1002 A 1 HETATM 40 H H9 FMN . . . C 3 80.211 -24.077 8.296 1 9.67 ? H9 FMN 1002 A 1 HETATM 41 H "H1'1" FMN . . . C 3 79.764 -22.915 5.023 1 21.55 ? "H1'1" FMN 1002 A 1 HETATM 42 H "H1'2" FMN . . . C 3 79.387 -23.558 6.621 1 21.55 ? "H1'2" FMN 1002 A 1 HETATM 43 H H2' FMN . . . C 3 81.391 -24.964 6.562 1 25.57 ? H2' FMN 1002 A 1 HETATM 44 H HO2' FMN . . . C 3 81.991 -24.77 3.928 1 19.44 ? HO2' FMN 1002 A 1 HETATM 45 H H3' FMN . . . C 3 80.798 -26.533 4.771 1 17.89 ? H3' FMN 1002 A 1 HETATM 46 H H4' FMN . . . C 3 78.273 -25.395 5.9 1 22.49 ? H4' FMN 1002 A 1 HETATM 47 H HO4' FMN . . . C 3 79.475 -27.129 7.609 1 27.38 ? HO4' FMN 1002 A 1 HETATM 48 H "H5'1" FMN . . . C 3 78.015 -27.419 4.59 1 26.34 ? "H5'1" FMN 1002 A 1 HETATM 49 H "H5'2" FMN . . . C 3 77.663 -27.727 6.289 1 26.34 ? "H5'2" FMN 1002 A 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 49 #