data_6VTQ # _model_server_result.job_id kClxDc7UygTxPO1b0Z7jgg _model_server_result.datetime_utc '2024-10-19 17:23:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vtq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 6VTQ # _exptl.entry_id 6VTQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VTQ _cell.length_a 30.37 _cell.length_b 66.21 _cell.length_c 111.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VTQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC C 1 LBT 2 n C GAL 2 C 2 GAL C 1 LBT 2 n D GLC 1 D 1 GLC C 2 LBT 2 n D GAL 2 D 2 GAL C 2 LBT # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 16 A CYS 16 1_555 B SG CYS 16 B CYS 16 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.879 ? disulf ? disulf2 A SG CYS 16 A CYS 16 1_555 B SG CYS 16 B CYS 16 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.779 ? covale ? covale1 A C LEU 37 A LEU 37 1_555 A N CSO 38 A CSO 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C CSO 38 A CSO 38 1_555 A N GLY 39 A GLY 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 B C LEU 37 B LEU 37 1_555 B N CSO 38 B CSO 38 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.335 ? covale ? covale4 B C LEU 37 B LEU 37 1_555 B N CSO 38 B CSO 38 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.331 ? covale ? covale5 B C LEU 37 B LEU 37 1_555 B N CSO 38 B CSO 38 1_555 ? ? ? ? C ? ? ? ? ? ? ? 1.327 ? covale ? covale6 B C CSO 38 B CSO 38 1_555 B N GLY 39 B GLY 39 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 B C CSO 38 B CSO 38 1_555 B N GLY 39 B GLY 39 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C CSO 38 B CSO 38 1_555 B N GLY 39 B GLY 39 1_555 ? C ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 C O4 GLC . C GLC 1 1_555 C C1 GAL . C GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 sing covale ? covale10 D O4 GLC . D GLC 1 1_555 D C1 GAL . D GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 sing # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 191 n n C1 C2 GOL sing 192 n n C1 H11 GOL sing 193 n n C1 H12 GOL sing 194 n n O1 HO1 GOL sing 195 n n C2 O2 GOL sing 196 n n C2 C3 GOL sing 197 n n C2 H2 GOL sing 198 n n O2 HO2 GOL sing 199 n n C3 O3 GOL sing 200 n n C3 H31 GOL sing 201 n n C3 H32 GOL sing 202 n n O3 HO3 GOL sing 203 n n # _atom_sites.entry_id 6VTQ _atom_sites.fract_transf_matrix[1][1] 0.032927 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL B 1 202 1 GOL GOL . F 3 GOL B 1 203 2 GOL GOL . G 4 HOH A 1 301 46 HOH HOH . G 4 HOH A 2 302 56 HOH HOH . G 4 HOH A 3 303 62 HOH HOH . G 4 HOH A 4 304 45 HOH HOH . G 4 HOH A 5 305 34 HOH HOH . G 4 HOH A 6 306 4 HOH HOH . G 4 HOH A 7 307 33 HOH HOH . G 4 HOH A 8 308 15 HOH HOH . G 4 HOH A 9 309 71 HOH HOH . G 4 HOH A 10 310 35 HOH HOH . G 4 HOH A 11 311 65 HOH HOH . G 4 HOH A 12 312 107 HOH HOH . G 4 HOH A 13 313 13 HOH HOH . G 4 HOH A 14 314 64 HOH HOH . G 4 HOH A 15 315 16 HOH HOH . G 4 HOH A 16 316 24 HOH HOH . G 4 HOH A 17 317 25 HOH HOH . G 4 HOH A 18 318 52 HOH HOH . G 4 HOH A 19 319 9 HOH HOH . G 4 HOH A 20 320 44 HOH HOH . G 4 HOH A 21 321 12 HOH HOH . G 4 HOH A 22 322 66 HOH HOH . G 4 HOH A 23 323 17 HOH HOH . G 4 HOH A 24 324 47 HOH HOH . G 4 HOH A 25 325 18 HOH HOH . G 4 HOH A 26 326 48 HOH HOH . G 4 HOH A 27 327 60 HOH HOH . G 4 HOH A 28 328 55 HOH HOH . G 4 HOH A 29 329 67 HOH HOH . G 4 HOH A 30 330 50 HOH HOH . G 4 HOH A 31 331 41 HOH HOH . G 4 HOH A 32 332 27 HOH HOH . G 4 HOH A 33 333 90 HOH HOH . G 4 HOH A 34 334 26 HOH HOH . G 4 HOH A 35 335 76 HOH HOH . G 4 HOH A 36 336 73 HOH HOH . G 4 HOH A 37 337 29 HOH HOH . G 4 HOH A 38 338 85 HOH HOH . G 4 HOH A 39 339 32 HOH HOH . G 4 HOH A 40 340 86 HOH HOH . G 4 HOH A 41 341 38 HOH HOH . G 4 HOH A 42 342 82 HOH HOH . G 4 HOH A 43 343 117 HOH HOH . G 4 HOH A 44 344 111 HOH HOH . G 4 HOH A 45 345 80 HOH HOH . G 4 HOH A 46 346 108 HOH HOH . G 4 HOH A 47 347 121 HOH HOH . G 4 HOH A 48 348 78 HOH HOH . H 4 HOH B 1 301 116 HOH HOH . H 4 HOH B 2 302 51 HOH HOH . H 4 HOH B 3 303 23 HOH HOH . H 4 HOH B 4 304 7 HOH HOH . H 4 HOH B 5 305 28 HOH HOH . H 4 HOH B 6 306 88 HOH HOH . H 4 HOH B 7 307 69 HOH HOH . H 4 HOH B 8 308 8 HOH HOH . H 4 HOH B 9 309 1 HOH HOH . H 4 HOH B 10 310 70 HOH HOH . H 4 HOH B 11 311 11 HOH HOH . H 4 HOH B 12 312 42 HOH HOH . H 4 HOH B 13 313 22 HOH HOH . H 4 HOH B 14 314 75 HOH HOH . H 4 HOH B 15 315 5 HOH HOH . H 4 HOH B 16 316 83 HOH HOH . H 4 HOH B 17 317 84 HOH HOH . H 4 HOH B 18 318 6 HOH HOH . H 4 HOH B 19 319 31 HOH HOH . H 4 HOH B 20 320 113 HOH HOH . H 4 HOH B 21 321 79 HOH HOH . H 4 HOH B 22 322 98 HOH HOH . H 4 HOH B 23 323 74 HOH HOH . H 4 HOH B 24 324 21 HOH HOH . H 4 HOH B 25 325 19 HOH HOH . H 4 HOH B 26 326 30 HOH HOH . H 4 HOH B 27 327 2 HOH HOH . H 4 HOH B 28 328 63 HOH HOH . H 4 HOH B 29 329 49 HOH HOH . H 4 HOH B 30 330 58 HOH HOH . H 4 HOH B 31 331 68 HOH HOH . H 4 HOH B 32 332 20 HOH HOH . H 4 HOH B 33 333 96 HOH HOH . H 4 HOH B 34 334 61 HOH HOH . H 4 HOH B 35 335 101 HOH HOH . H 4 HOH B 36 336 89 HOH HOH . H 4 HOH B 37 337 97 HOH HOH . H 4 HOH B 38 338 110 HOH HOH . H 4 HOH B 39 339 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -6.013 -4 63.919 1 62.49 ? C1 GOL 202 B 1 HETATM 2 O O1 GOL . . . E 3 -5.58 -5.346 64.093 1 55.75 ? O1 GOL 202 B 1 HETATM 3 C C2 GOL . . . E 3 -4.733 -3.129 64.014 1 57.62 ? C2 GOL 202 B 1 HETATM 4 O O2 GOL . . . E 3 -3.622 -3.803 63.521 1 60.62 ? O2 GOL 202 B 1 HETATM 5 C C3 GOL . . . E 3 -4.965 -1.825 63.219 1 66.16 ? C3 GOL 202 B 1 HETATM 6 O O3 GOL . . . E 3 -3.685 -1.434 62.69 1 45.36 ? O3 GOL 202 B 1 HETATM 7 H H11 GOL . . . E 3 -6.655 -3.75 64.601 1 74.98 ? H11 GOL 202 B 1 HETATM 8 H H12 GOL . . . E 3 -6.45 -3.883 63.061 1 74.98 ? H12 GOL 202 B 1 HETATM 9 H HO1 GOL . . . E 3 -4.781 -5.418 63.842 1 66.9 ? HO1 GOL 202 B 1 HETATM 10 H H2 GOL . . . E 3 -4.557 -2.926 64.946 1 69.14 ? H2 GOL 202 B 1 HETATM 11 H HO2 GOL . . . E 3 -3.112 -3.258 63.135 1 72.74 ? HO2 GOL 202 B 1 HETATM 12 H H31 GOL . . . E 3 -5.328 -1.132 63.792 1 79.39 ? H31 GOL 202 B 1 HETATM 13 H H32 GOL . . . E 3 -5.605 -1.966 62.504 1 79.39 ? H32 GOL 202 B 1 HETATM 14 H HO3 GOL . . . E 3 -3.15 -1.298 63.323 1 54.43 ? HO3 GOL 202 B 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #