data_6VTS # _model_server_result.job_id C9ettFaiYPD0aig4uhtqdw _model_server_result.datetime_utc '2025-08-20 03:06:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vts # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":203}' # _entry.id 6VTS # _exptl.entry_id 6VTS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VTS _cell.length_a 30.3 _cell.length_b 76.87 _cell.length_c 113.77 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VTS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC C 2 LBT 2 n C GAL 2 C 2 GAL C 2 LBT 2 n D GLC 1 D 1 GLC C 1 LBT 2 n D GAL 2 D 2 GAL C 1 LBT # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 GLC . C GLC 1 1_555 C C1 GAL . C GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 sing covale ? covale2 D O4 GLC . D GLC 1 1_555 D C1 GAL . D GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 sing # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 177 n n C1 C2 GOL sing 178 n n C1 H11 GOL sing 179 n n C1 H12 GOL sing 180 n n O1 HO1 GOL sing 181 n n C2 O2 GOL sing 182 n n C2 C3 GOL sing 183 n n C2 H2 GOL sing 184 n n O2 HO2 GOL sing 185 n n C3 O3 GOL sing 186 n n C3 H31 GOL sing 187 n n C3 H32 GOL sing 188 n n O3 HO3 GOL sing 189 n n # _atom_sites.entry_id 6VTS _atom_sites.fract_transf_matrix[1][1] 0.033003 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 202 1 GOL GOL . F 3 GOL A 1 203 3 GOL GOL . G 3 GOL B 1 202 2 GOL GOL . H 4 HOH A 1 301 135 HOH HOH . H 4 HOH A 2 302 16 HOH HOH . H 4 HOH A 3 303 10 HOH HOH . H 4 HOH A 4 304 51 HOH HOH . H 4 HOH A 5 305 25 HOH HOH . H 4 HOH A 6 306 44 HOH HOH . H 4 HOH A 7 307 65 HOH HOH . H 4 HOH A 8 308 78 HOH HOH . H 4 HOH A 9 309 115 HOH HOH . H 4 HOH A 10 310 98 HOH HOH . H 4 HOH A 11 311 5 HOH HOH . H 4 HOH A 12 312 55 HOH HOH . H 4 HOH A 13 313 104 HOH HOH . H 4 HOH A 14 314 2 HOH HOH . H 4 HOH A 15 315 12 HOH HOH . H 4 HOH A 16 316 1 HOH HOH . H 4 HOH A 17 317 106 HOH HOH . H 4 HOH A 18 318 130 HOH HOH . H 4 HOH A 19 319 43 HOH HOH . H 4 HOH A 20 320 42 HOH HOH . H 4 HOH A 21 321 61 HOH HOH . H 4 HOH A 22 322 29 HOH HOH . H 4 HOH A 23 323 40 HOH HOH . H 4 HOH A 24 324 94 HOH HOH . H 4 HOH A 25 325 26 HOH HOH . H 4 HOH A 26 326 41 HOH HOH . H 4 HOH A 27 327 76 HOH HOH . H 4 HOH A 28 328 79 HOH HOH . H 4 HOH A 29 329 54 HOH HOH . H 4 HOH A 30 330 3 HOH HOH . H 4 HOH A 31 331 129 HOH HOH . H 4 HOH A 32 332 140 HOH HOH . H 4 HOH A 33 333 123 HOH HOH . H 4 HOH A 34 334 6 HOH HOH . H 4 HOH A 35 335 45 HOH HOH . H 4 HOH A 36 336 120 HOH HOH . H 4 HOH A 37 337 70 HOH HOH . H 4 HOH A 38 338 4 HOH HOH . H 4 HOH A 39 339 39 HOH HOH . H 4 HOH A 40 340 71 HOH HOH . H 4 HOH A 41 341 20 HOH HOH . H 4 HOH A 42 342 86 HOH HOH . H 4 HOH A 43 343 13 HOH HOH . H 4 HOH A 44 344 126 HOH HOH . H 4 HOH A 45 345 21 HOH HOH . H 4 HOH A 46 346 97 HOH HOH . H 4 HOH A 47 347 58 HOH HOH . H 4 HOH A 48 348 139 HOH HOH . H 4 HOH A 49 349 124 HOH HOH . H 4 HOH A 50 350 143 HOH HOH . H 4 HOH A 51 351 111 HOH HOH . H 4 HOH A 52 352 113 HOH HOH . H 4 HOH A 53 353 101 HOH HOH . H 4 HOH A 54 354 63 HOH HOH . H 4 HOH A 55 355 85 HOH HOH . H 4 HOH A 56 356 69 HOH HOH . H 4 HOH A 57 357 67 HOH HOH . H 4 HOH A 58 358 80 HOH HOH . H 4 HOH A 59 359 132 HOH HOH . H 4 HOH A 60 360 142 HOH HOH . H 4 HOH A 61 361 133 HOH HOH . H 4 HOH A 62 362 137 HOH HOH . H 4 HOH A 63 363 109 HOH HOH . I 4 HOH B 1 301 17 HOH HOH . I 4 HOH B 2 302 56 HOH HOH . I 4 HOH B 3 303 27 HOH HOH . I 4 HOH B 4 304 30 HOH HOH . I 4 HOH B 5 305 7 HOH HOH . I 4 HOH B 6 306 11 HOH HOH . I 4 HOH B 7 307 118 HOH HOH . I 4 HOH B 8 308 8 HOH HOH . I 4 HOH B 9 309 31 HOH HOH . I 4 HOH B 10 310 18 HOH HOH . I 4 HOH B 11 311 38 HOH HOH . I 4 HOH B 12 312 34 HOH HOH . I 4 HOH B 13 313 47 HOH HOH . I 4 HOH B 14 314 33 HOH HOH . I 4 HOH B 15 315 9 HOH HOH . I 4 HOH B 16 316 24 HOH HOH . I 4 HOH B 17 317 23 HOH HOH . I 4 HOH B 18 318 95 HOH HOH . I 4 HOH B 19 319 66 HOH HOH . I 4 HOH B 20 320 46 HOH HOH . I 4 HOH B 21 321 59 HOH HOH . I 4 HOH B 22 322 52 HOH HOH . I 4 HOH B 23 323 57 HOH HOH . I 4 HOH B 24 324 19 HOH HOH . I 4 HOH B 25 325 28 HOH HOH . I 4 HOH B 26 326 37 HOH HOH . I 4 HOH B 27 327 110 HOH HOH . I 4 HOH B 28 328 15 HOH HOH . I 4 HOH B 29 329 60 HOH HOH . I 4 HOH B 30 330 92 HOH HOH . I 4 HOH B 31 331 14 HOH HOH . I 4 HOH B 32 332 141 HOH HOH . I 4 HOH B 33 333 127 HOH HOH . I 4 HOH B 34 334 107 HOH HOH . I 4 HOH B 35 335 138 HOH HOH . I 4 HOH B 36 336 122 HOH HOH . I 4 HOH B 37 337 136 HOH HOH . I 4 HOH B 38 338 108 HOH HOH . I 4 HOH B 39 339 102 HOH HOH . I 4 HOH B 40 340 121 HOH HOH . I 4 HOH B 41 341 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 -17.829 8.972 -30.659 1 57.69 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . F 3 -17.681 7.942 -31.664 1 67.88 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . F 3 -18.595 10.211 -31.307 1 73.76 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . F 3 -18.337 10.281 -32.68 1 87.48 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . F 3 -20.129 9.995 -31.006 1 63.42 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . F 3 -20.813 11.225 -30.804 1 51.13 ? O3 GOL 203 A 1 HETATM 7 H H11 GOL . . . F 3 -18.329 8.664 -29.887 1 69.23 ? H11 GOL 203 A 1 HETATM 8 H H12 GOL . . . F 3 -16.974 9.277 -30.317 1 69.23 ? H12 GOL 203 A 1 HETATM 9 H HO1 GOL . . . F 3 -17.237 7.303 -31.307 1 81.46 ? HO1 GOL 203 A 1 HETATM 10 H H2 GOL . . . F 3 -18.297 11.043 -30.906 1 88.51 ? H2 GOL 203 A 1 HETATM 11 H HO2 GOL . . . F 3 -18.027 9.52 -32.926 1 104.98 ? HO2 GOL 203 A 1 HETATM 12 H H31 GOL . . . F 3 -20.498 9.486 -31.745 1 76.1 ? H31 GOL 203 A 1 HETATM 13 H H32 GOL . . . F 3 -20.191 9.409 -30.236 1 76.1 ? H32 GOL 203 A 1 HETATM 14 H HO3 GOL . . . F 3 -21.239 11.165 -30.076 1 61.35 ? HO3 GOL 203 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #