data_6VUR # _model_server_result.job_id UwuzrtH67-bDq1Qrd-aV6g _model_server_result.datetime_utc '2025-01-07 19:24:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vur # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6VUR # _exptl.entry_id 6VUR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6VUR _cell.length_a 174.776 _cell.length_b 174.776 _cell.length_c 123.268 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VUR _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 123.268 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 123.268 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 123.268 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 154 A ALA 134 1_555 I NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc2 A O THR 156 A THR 136 1_555 J NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc3 A O SER 378 A SER 358 1_555 I NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc4 A OG1 THR 418 A THR 398 1_555 J NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc5 J NA NA . A NA 509 1_555 K O3 SO4 . A SO4 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc6 J NA NA . A NA 509 1_555 P O HOH . A HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 369 n n S O2 SO4 doub 370 n n S O3 SO4 sing 371 n n S O4 SO4 sing 372 n n # _atom_sites.entry_id 6VUR _atom_sites.fract_transf_matrix[1][1] 0.005722 _atom_sites.fract_transf_matrix[1][2] 0.003303 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ROG A 1 501 502 ROG H97 . C 3 SO4 A 1 502 1 SO4 SO4 . D 3 SO4 A 1 503 2 SO4 SO4 . E 4 GOL A 1 504 4 GOL GOL . F 4 GOL A 1 505 5 GOL GOL . G 5 PEG A 1 506 6 PEG PEG . H 5 PEG A 1 507 7 PEG PEG . I 6 NA A 1 508 1 NA NA . J 6 NA A 1 509 2 NA NA . K 3 SO4 A 1 510 1 SO4 SO4 . L 7 CL A 1 511 1 CL CL . M 7 CL A 1 512 2 CL CL . N 4 GOL A 1 513 3 GOL GOL . O 7 CL A 1 514 1 CL CL . P 8 HOH A 1 601 204 HOH HOH . P 8 HOH A 2 602 267 HOH HOH . P 8 HOH A 3 603 108 HOH HOH . P 8 HOH A 4 604 82 HOH HOH . P 8 HOH A 5 605 258 HOH HOH . P 8 HOH A 6 606 241 HOH HOH . P 8 HOH A 7 607 79 HOH HOH . P 8 HOH A 8 608 121 HOH HOH . P 8 HOH A 9 609 80 HOH HOH . P 8 HOH A 10 610 158 HOH HOH . P 8 HOH A 11 611 33 HOH HOH . P 8 HOH A 12 612 242 HOH HOH . P 8 HOH A 13 613 226 HOH HOH . P 8 HOH A 14 614 229 HOH HOH . P 8 HOH A 15 615 92 HOH HOH . P 8 HOH A 16 616 257 HOH HOH . P 8 HOH A 17 617 98 HOH HOH . P 8 HOH A 18 618 69 HOH HOH . P 8 HOH A 19 619 8 HOH HOH . P 8 HOH A 20 620 19 HOH HOH . P 8 HOH A 21 621 40 HOH HOH . P 8 HOH A 22 622 93 HOH HOH . P 8 HOH A 23 623 126 HOH HOH . P 8 HOH A 24 624 72 HOH HOH . P 8 HOH A 25 625 14 HOH HOH . P 8 HOH A 26 626 132 HOH HOH . P 8 HOH A 27 627 84 HOH HOH . P 8 HOH A 28 628 71 HOH HOH . P 8 HOH A 29 629 268 HOH HOH . P 8 HOH A 30 630 73 HOH HOH . P 8 HOH A 31 631 30 HOH HOH . P 8 HOH A 32 632 236 HOH HOH . P 8 HOH A 33 633 135 HOH HOH . P 8 HOH A 34 634 34 HOH HOH . P 8 HOH A 35 635 153 HOH HOH . P 8 HOH A 36 636 38 HOH HOH . P 8 HOH A 37 637 109 HOH HOH . P 8 HOH A 38 638 149 HOH HOH . P 8 HOH A 39 639 15 HOH HOH . P 8 HOH A 40 640 83 HOH HOH . P 8 HOH A 41 641 125 HOH HOH . P 8 HOH A 42 642 56 HOH HOH . P 8 HOH A 43 643 177 HOH HOH . P 8 HOH A 44 644 85 HOH HOH . P 8 HOH A 45 645 128 HOH HOH . P 8 HOH A 46 646 249 HOH HOH . P 8 HOH A 47 647 192 HOH HOH . P 8 HOH A 48 648 76 HOH HOH . P 8 HOH A 49 649 251 HOH HOH . P 8 HOH A 50 650 1 HOH HOH . P 8 HOH A 51 651 189 HOH HOH . P 8 HOH A 52 652 36 HOH HOH . P 8 HOH A 53 653 183 HOH HOH . P 8 HOH A 54 654 124 HOH HOH . P 8 HOH A 55 655 127 HOH HOH . P 8 HOH A 56 656 21 HOH HOH . P 8 HOH A 57 657 264 HOH HOH . P 8 HOH A 58 658 96 HOH HOH . P 8 HOH A 59 659 191 HOH HOH . P 8 HOH A 60 660 7 HOH HOH . P 8 HOH A 61 661 245 HOH HOH . P 8 HOH A 62 662 129 HOH HOH . P 8 HOH A 63 663 269 HOH HOH . P 8 HOH A 64 664 3 HOH HOH . P 8 HOH A 65 665 47 HOH HOH . P 8 HOH A 66 666 154 HOH HOH . P 8 HOH A 67 667 49 HOH HOH . P 8 HOH A 68 668 89 HOH HOH . P 8 HOH A 69 669 23 HOH HOH . P 8 HOH A 70 670 254 HOH HOH . P 8 HOH A 71 671 51 HOH HOH . P 8 HOH A 72 672 39 HOH HOH . P 8 HOH A 73 673 77 HOH HOH . P 8 HOH A 74 674 9 HOH HOH . P 8 HOH A 75 675 16 HOH HOH . P 8 HOH A 76 676 24 HOH HOH . P 8 HOH A 77 677 223 HOH HOH . P 8 HOH A 78 678 111 HOH HOH . P 8 HOH A 79 679 131 HOH HOH . P 8 HOH A 80 680 64 HOH HOH . P 8 HOH A 81 681 265 HOH HOH . P 8 HOH A 82 682 42 HOH HOH . P 8 HOH A 83 683 53 HOH HOH . P 8 HOH A 84 684 54 HOH HOH . P 8 HOH A 85 685 169 HOH HOH . P 8 HOH A 86 686 244 HOH HOH . P 8 HOH A 87 687 63 HOH HOH . P 8 HOH A 88 688 67 HOH HOH . P 8 HOH A 89 689 203 HOH HOH . P 8 HOH A 90 690 239 HOH HOH . P 8 HOH A 91 691 110 HOH HOH . P 8 HOH A 92 692 2 HOH HOH . P 8 HOH A 93 693 87 HOH HOH . P 8 HOH A 94 694 240 HOH HOH . P 8 HOH A 95 695 35 HOH HOH . P 8 HOH A 96 696 205 HOH HOH . P 8 HOH A 97 697 248 HOH HOH . P 8 HOH A 98 698 237 HOH HOH . P 8 HOH A 99 699 112 HOH HOH . P 8 HOH A 100 700 147 HOH HOH . P 8 HOH A 101 701 75 HOH HOH . P 8 HOH A 102 702 78 HOH HOH . P 8 HOH A 103 703 142 HOH HOH . P 8 HOH A 104 704 29 HOH HOH . P 8 HOH A 105 705 250 HOH HOH . P 8 HOH A 106 706 193 HOH HOH . P 8 HOH A 107 707 171 HOH HOH . P 8 HOH A 108 708 118 HOH HOH . P 8 HOH A 109 709 81 HOH HOH . P 8 HOH A 110 710 207 HOH HOH . P 8 HOH A 111 711 238 HOH HOH . P 8 HOH A 112 712 65 HOH HOH . P 8 HOH A 113 713 247 HOH HOH . P 8 HOH A 114 714 66 HOH HOH . P 8 HOH A 115 715 273 HOH HOH . P 8 HOH A 116 716 140 HOH HOH . P 8 HOH A 117 717 259 HOH HOH . P 8 HOH A 118 718 165 HOH HOH . P 8 HOH A 119 719 206 HOH HOH . P 8 HOH A 120 720 22 HOH HOH . P 8 HOH A 121 721 106 HOH HOH . P 8 HOH A 122 722 28 HOH HOH . P 8 HOH A 123 723 4 HOH HOH . P 8 HOH A 124 724 272 HOH HOH . P 8 HOH A 125 725 45 HOH HOH . P 8 HOH A 126 726 271 HOH HOH . P 8 HOH A 127 727 105 HOH HOH . P 8 HOH A 128 728 260 HOH HOH . P 8 HOH A 129 729 59 HOH HOH . P 8 HOH A 130 730 173 HOH HOH . P 8 HOH A 131 731 179 HOH HOH . P 8 HOH A 132 732 102 HOH HOH . P 8 HOH A 133 733 41 HOH HOH . P 8 HOH A 134 734 68 HOH HOH . P 8 HOH A 135 735 46 HOH HOH . P 8 HOH A 136 736 178 HOH HOH . P 8 HOH A 137 737 170 HOH HOH . P 8 HOH A 138 738 208 HOH HOH . P 8 HOH A 139 739 166 HOH HOH . P 8 HOH A 140 740 246 HOH HOH . P 8 HOH A 141 741 52 HOH HOH . P 8 HOH A 142 742 55 HOH HOH . P 8 HOH A 143 743 255 HOH HOH . P 8 HOH A 144 744 176 HOH HOH . P 8 HOH A 145 745 62 HOH HOH . P 8 HOH A 146 746 160 HOH HOH . P 8 HOH A 147 747 146 HOH HOH . P 8 HOH A 148 748 138 HOH HOH . P 8 HOH A 149 749 143 HOH HOH . P 8 HOH A 150 750 263 HOH HOH . P 8 HOH A 151 751 48 HOH HOH . P 8 HOH A 152 752 88 HOH HOH . P 8 HOH A 153 753 162 HOH HOH . P 8 HOH A 154 754 235 HOH HOH . P 8 HOH A 155 755 57 HOH HOH . P 8 HOH A 156 756 215 HOH HOH . P 8 HOH A 157 757 37 HOH HOH . P 8 HOH A 158 758 114 HOH HOH . P 8 HOH A 159 759 120 HOH HOH . P 8 HOH A 160 760 252 HOH HOH . P 8 HOH A 161 761 5 HOH HOH . P 8 HOH A 162 762 243 HOH HOH . P 8 HOH A 163 763 58 HOH HOH . P 8 HOH A 164 764 256 HOH HOH . P 8 HOH A 165 765 101 HOH HOH . P 8 HOH A 166 766 97 HOH HOH . P 8 HOH A 167 767 26 HOH HOH . P 8 HOH A 168 768 274 HOH HOH . P 8 HOH A 169 769 137 HOH HOH . P 8 HOH A 170 770 150 HOH HOH . P 8 HOH A 171 771 186 HOH HOH . P 8 HOH A 172 772 225 HOH HOH . P 8 HOH A 173 773 134 HOH HOH . P 8 HOH A 174 774 70 HOH HOH . P 8 HOH A 175 775 50 HOH HOH . P 8 HOH A 176 776 218 HOH HOH . P 8 HOH A 177 777 270 HOH HOH . P 8 HOH A 178 778 195 HOH HOH . P 8 HOH A 179 779 100 HOH HOH . P 8 HOH A 180 780 230 HOH HOH . P 8 HOH A 181 781 115 HOH HOH . P 8 HOH A 182 782 221 HOH HOH . P 8 HOH A 183 783 163 HOH HOH . P 8 HOH A 184 784 151 HOH HOH . P 8 HOH A 185 785 232 HOH HOH . P 8 HOH A 186 786 6 HOH HOH . P 8 HOH A 187 787 104 HOH HOH . P 8 HOH A 188 788 32 HOH HOH . P 8 HOH A 189 789 262 HOH HOH . P 8 HOH A 190 790 228 HOH HOH . P 8 HOH A 191 791 231 HOH HOH . P 8 HOH A 192 792 198 HOH HOH . P 8 HOH A 193 793 261 HOH HOH . P 8 HOH A 194 794 234 HOH HOH . P 8 HOH A 195 795 266 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 3 25.967 -19.312 27.6 1 98.57 ? S SO4 502 A 1 HETATM 2 O O1 SO4 . . . C 3 26.172 -20.071 26.395 1 99.14 ? O1 SO4 502 A 1 HETATM 3 O O2 SO4 . . . C 3 24.753 -18.546 27.488 1 93.55 ? O2 SO4 502 A 1 HETATM 4 O O3 SO4 . . . C 3 25.862 -20.214 28.718 1 93.21 ? O3 SO4 502 A 1 HETATM 5 O O4 SO4 . . . C 3 27.08 -18.42 27.795 1 93.64 ? O4 SO4 502 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #