data_6VUS
#
_model_server_result.job_id            b6IBrzAg3cPWeLF_beIpHw 
_model_server_result.datetime_utc      '2024-10-20 00:47:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vus 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    6VUS 
#
_exptl.entry_id    6VUS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              393.57 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[(4-amino-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-[2-(diethylamino)ethyl]acetamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6VUS 
_cell.length_a            174.735 
_cell.length_b            174.735 
_cell.length_c            123.954 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VUS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 123.954 
5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 123.954 
6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 123.954 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C18 H27 N5 O S2' 
_chem_comp.formula_weight    393.57 
_chem_comp.id                RNV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[(4-amino-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-[2-(diethylamino)ethyl]acetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C22 C23 RNV sing 290 n n 
C22 C21 RNV sing 291 n n 
C23 C24 RNV sing 292 n n 
C24 C25 RNV sing 293 n n 
C21 S26 RNV sing 294 n y 
C21 C20 RNV doub 295 n y 
S26 C18 RNV sing 296 n y 
C20 C25 RNV sing 297 n n 
C20 C19 RNV sing 298 n y 
C18 C19 RNV doub 299 n y 
C18 N17 RNV sing 300 n y 
C19 C02 RNV sing 301 n y 
N17 C04 RNV doub 302 n y 
C02 N01 RNV sing 303 n n 
C02 N03 RNV doub 304 n y 
C04 N03 RNV sing 305 n y 
C04 S05 RNV sing 306 n n 
S05 C06 RNV sing 307 n n 
C06 C07 RNV sing 308 n n 
C15 C14 RNV sing 309 n n 
C14 N11 RNV sing 310 n n 
C07 N08 RNV sing 311 n n 
C07 O16 RNV doub 312 n n 
N08 C09 RNV sing 313 n n 
N11 C10 RNV sing 314 n n 
N11 C12 RNV sing 315 n n 
C10 C09 RNV sing 316 n n 
C12 C13 RNV sing 317 n n 
C10 H1 RNV sing 318 n n 
C10 H2 RNV sing 319 n n 
C12 H3 RNV sing 320 n n 
C12 H4 RNV sing 321 n n 
N01 H5 RNV sing 322 n n 
N01 H6 RNV sing 323 n n 
C06 H7 RNV sing 324 n n 
C06 H8 RNV sing 325 n n 
N08 H9 RNV sing 326 n n 
C09 H10 RNV sing 327 n n 
C09 H11 RNV sing 328 n n 
C13 H13 RNV sing 329 n n 
C13 H14 RNV sing 330 n n 
C13 H15 RNV sing 331 n n 
C14 H16 RNV sing 332 n n 
C14 H17 RNV sing 333 n n 
C15 H18 RNV sing 334 n n 
C15 H19 RNV sing 335 n n 
C15 H20 RNV sing 336 n n 
C22 H21 RNV sing 337 n n 
C22 H22 RNV sing 338 n n 
C23 H23 RNV sing 339 n n 
C23 H24 RNV sing 340 n n 
C24 H25 RNV sing 341 n n 
C24 H26 RNV sing 342 n n 
C25 H27 RNV sing 343 n n 
C25 H28 RNV sing 344 n n 
#
_atom_sites.entry_id                     6VUS 
_atom_sites.fract_transf_matrix[1][1]    0.005723 
_atom_sites.fract_transf_matrix[1][2]    0.003304 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006608 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008068 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RNV A 1 501 502 RNV H04 . 
C 2 RNV A 1 502 504 RNV H04 . 
D 3 GOL A 1 503 508 GOL GOL . 
E 3 GOL A 1 504 510 GOL GOL . 
F 4 HOH A 1 601 34 HOH HOH . 
F 4 HOH A 2 602 105 HOH HOH . 
F 4 HOH A 3 603 100 HOH HOH . 
F 4 HOH A 4 604 48 HOH HOH . 
F 4 HOH A 5 605 225 HOH HOH . 
F 4 HOH A 6 606 231 HOH HOH . 
F 4 HOH A 7 607 112 HOH HOH . 
F 4 HOH A 8 608 12 HOH HOH . 
F 4 HOH A 9 609 68 HOH HOH . 
F 4 HOH A 10 610 241 HOH HOH . 
F 4 HOH A 11 611 153 HOH HOH . 
F 4 HOH A 12 612 238 HOH HOH . 
F 4 HOH A 13 613 237 HOH HOH . 
F 4 HOH A 14 614 165 HOH HOH . 
F 4 HOH A 15 615 57 HOH HOH . 
F 4 HOH A 16 616 265 HOH HOH . 
F 4 HOH A 17 617 59 HOH HOH . 
F 4 HOH A 18 618 27 HOH HOH . 
F 4 HOH A 19 619 41 HOH HOH . 
F 4 HOH A 20 620 66 HOH HOH . 
F 4 HOH A 21 621 75 HOH HOH . 
F 4 HOH A 22 622 35 HOH HOH . 
F 4 HOH A 23 623 65 HOH HOH . 
F 4 HOH A 24 624 43 HOH HOH . 
F 4 HOH A 25 625 9 HOH HOH . 
F 4 HOH A 26 626 81 HOH HOH . 
F 4 HOH A 27 627 1 HOH HOH . 
F 4 HOH A 28 628 134 HOH HOH . 
F 4 HOH A 29 629 26 HOH HOH . 
F 4 HOH A 30 630 25 HOH HOH . 
F 4 HOH A 31 631 64 HOH HOH . 
F 4 HOH A 32 632 171 HOH HOH . 
F 4 HOH A 33 633 223 HOH HOH . 
F 4 HOH A 34 634 247 HOH HOH . 
F 4 HOH A 35 635 16 HOH HOH . 
F 4 HOH A 36 636 163 HOH HOH . 
F 4 HOH A 37 637 21 HOH HOH . 
F 4 HOH A 38 638 261 HOH HOH . 
F 4 HOH A 39 639 82 HOH HOH . 
F 4 HOH A 40 640 236 HOH HOH . 
F 4 HOH A 41 641 22 HOH HOH . 
F 4 HOH A 42 642 219 HOH HOH . 
F 4 HOH A 43 643 119 HOH HOH . 
F 4 HOH A 44 644 29 HOH HOH . 
F 4 HOH A 45 645 255 HOH HOH . 
F 4 HOH A 46 646 220 HOH HOH . 
F 4 HOH A 47 647 3 HOH HOH . 
F 4 HOH A 48 648 74 HOH HOH . 
F 4 HOH A 49 649 124 HOH HOH . 
F 4 HOH A 50 650 122 HOH HOH . 
F 4 HOH A 51 651 233 HOH HOH . 
F 4 HOH A 52 652 44 HOH HOH . 
F 4 HOH A 53 653 63 HOH HOH . 
F 4 HOH A 54 654 17 HOH HOH . 
F 4 HOH A 55 655 58 HOH HOH . 
F 4 HOH A 56 656 6 HOH HOH . 
F 4 HOH A 57 657 260 HOH HOH . 
F 4 HOH A 58 658 202 HOH HOH . 
F 4 HOH A 59 659 67 HOH HOH . 
F 4 HOH A 60 660 221 HOH HOH . 
F 4 HOH A 61 661 23 HOH HOH . 
F 4 HOH A 62 662 54 HOH HOH . 
F 4 HOH A 63 663 249 HOH HOH . 
F 4 HOH A 64 664 250 HOH HOH . 
F 4 HOH A 65 665 87 HOH HOH . 
F 4 HOH A 66 666 125 HOH HOH . 
F 4 HOH A 67 667 262 HOH HOH . 
F 4 HOH A 68 668 4 HOH HOH . 
F 4 HOH A 69 669 116 HOH HOH . 
F 4 HOH A 70 670 128 HOH HOH . 
F 4 HOH A 71 671 50 HOH HOH . 
F 4 HOH A 72 672 146 HOH HOH . 
F 4 HOH A 73 673 130 HOH HOH . 
F 4 HOH A 74 674 229 HOH HOH . 
F 4 HOH A 75 675 40 HOH HOH . 
F 4 HOH A 76 676 46 HOH HOH . 
F 4 HOH A 77 677 77 HOH HOH . 
F 4 HOH A 78 678 106 HOH HOH . 
F 4 HOH A 79 679 84 HOH HOH . 
F 4 HOH A 80 680 94 HOH HOH . 
F 4 HOH A 81 681 224 HOH HOH . 
F 4 HOH A 82 682 10 HOH HOH . 
F 4 HOH A 83 683 101 HOH HOH . 
F 4 HOH A 84 684 97 HOH HOH . 
F 4 HOH A 85 685 13 HOH HOH . 
F 4 HOH A 86 686 8 HOH HOH . 
F 4 HOH A 87 687 47 HOH HOH . 
F 4 HOH A 88 688 60 HOH HOH . 
F 4 HOH A 89 689 90 HOH HOH . 
F 4 HOH A 90 690 253 HOH HOH . 
F 4 HOH A 91 691 162 HOH HOH . 
F 4 HOH A 92 692 183 HOH HOH . 
F 4 HOH A 93 693 45 HOH HOH . 
F 4 HOH A 94 694 196 HOH HOH . 
F 4 HOH A 95 695 263 HOH HOH . 
F 4 HOH A 96 696 86 HOH HOH . 
F 4 HOH A 97 697 259 HOH HOH . 
F 4 HOH A 98 698 256 HOH HOH . 
F 4 HOH A 99 699 228 HOH HOH . 
F 4 HOH A 100 700 227 HOH HOH . 
F 4 HOH A 101 701 222 HOH HOH . 
F 4 HOH A 102 702 121 HOH HOH . 
F 4 HOH A 103 703 132 HOH HOH . 
F 4 HOH A 104 704 270 HOH HOH . 
F 4 HOH A 105 705 170 HOH HOH . 
F 4 HOH A 106 706 118 HOH HOH . 
F 4 HOH A 107 707 31 HOH HOH . 
F 4 HOH A 108 708 85 HOH HOH . 
F 4 HOH A 109 709 18 HOH HOH . 
F 4 HOH A 110 710 14 HOH HOH . 
F 4 HOH A 111 711 72 HOH HOH . 
F 4 HOH A 112 712 138 HOH HOH . 
F 4 HOH A 113 713 110 HOH HOH . 
F 4 HOH A 114 714 148 HOH HOH . 
F 4 HOH A 115 715 28 HOH HOH . 
F 4 HOH A 116 716 248 HOH HOH . 
F 4 HOH A 117 717 218 HOH HOH . 
F 4 HOH A 118 718 269 HOH HOH . 
F 4 HOH A 119 719 93 HOH HOH . 
F 4 HOH A 120 720 240 HOH HOH . 
F 4 HOH A 121 721 174 HOH HOH . 
F 4 HOH A 122 722 133 HOH HOH . 
F 4 HOH A 123 723 83 HOH HOH . 
F 4 HOH A 124 724 243 HOH HOH . 
F 4 HOH A 125 725 55 HOH HOH . 
F 4 HOH A 126 726 5 HOH HOH . 
F 4 HOH A 127 727 264 HOH HOH . 
F 4 HOH A 128 728 267 HOH HOH . 
F 4 HOH A 129 729 210 HOH HOH . 
F 4 HOH A 130 730 242 HOH HOH . 
F 4 HOH A 131 731 52 HOH HOH . 
F 4 HOH A 132 732 88 HOH HOH . 
F 4 HOH A 133 733 203 HOH HOH . 
F 4 HOH A 134 734 149 HOH HOH . 
F 4 HOH A 135 735 239 HOH HOH . 
F 4 HOH A 136 736 180 HOH HOH . 
F 4 HOH A 137 737 79 HOH HOH . 
F 4 HOH A 138 738 127 HOH HOH . 
F 4 HOH A 139 739 145 HOH HOH . 
F 4 HOH A 140 740 251 HOH HOH . 
F 4 HOH A 141 741 200 HOH HOH . 
F 4 HOH A 142 742 252 HOH HOH . 
F 4 HOH A 143 743 206 HOH HOH . 
F 4 HOH A 144 744 62 HOH HOH . 
F 4 HOH A 145 745 38 HOH HOH . 
F 4 HOH A 146 746 266 HOH HOH . 
F 4 HOH A 147 747 207 HOH HOH . 
F 4 HOH A 148 748 197 HOH HOH . 
F 4 HOH A 149 749 268 HOH HOH . 
F 4 HOH A 150 750 213 HOH HOH . 
F 4 HOH A 151 751 166 HOH HOH . 
F 4 HOH A 152 752 33 HOH HOH . 
F 4 HOH A 153 753 234 HOH HOH . 
F 4 HOH A 154 754 161 HOH HOH . 
F 4 HOH A 155 755 209 HOH HOH . 
F 4 HOH A 156 756 211 HOH HOH . 
F 4 HOH A 157 757 214 HOH HOH . 
F 4 HOH A 158 758 212 HOH HOH . 
F 4 HOH A 159 759 272 HOH HOH . 
F 4 HOH A 160 760 230 HOH HOH . 
F 4 HOH A 161 761 254 HOH HOH . 
F 4 HOH A 162 762 226 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 RNV . . . B 2 19.872 -11.452 42.024 1 60.08 ? C10 RNV 501 A 1 
HETATM 2 C C12 RNV . . . B 2 17.808 -12.677 42.307 1 58.36 ? C12 RNV 501 A 1 
HETATM 3 N N01 RNV . . . B 2 22.539 -11.385 37.623 1 39.51 ? N01 RNV 501 A 1 
HETATM 4 C C02 RNV . . . B 2 21.29 -10.881 37.088 1 40.39 ? C02 RNV 501 A 1 
HETATM 5 N N03 RNV . . . B 2 20.741 -9.84 37.693 1 42.34 ? N03 RNV 501 A 1 
HETATM 6 C C04 RNV . . . B 2 19.593 -9.337 37.252 1 43.87 ? C04 RNV 501 A 1 
HETATM 7 S S05 RNV . . . B 2 18.908 -7.889 38.121 1 45.49 ? S05 RNV 501 A 1 
HETATM 8 C C06 RNV . . . B 2 20.234 -7.211 39.206 1 50.38 ? C06 RNV 501 A 1 
HETATM 9 C C07 RNV . . . B 2 20.143 -7.899 40.596 1 52.81 ? C07 RNV 501 A 1 
HETATM 10 N N08 RNV . . . B 2 20.303 -9.354 40.755 1 54.36 ? N08 RNV 501 A 1 
HETATM 11 C C09 RNV . . . B 2 20.197 -9.944 42.108 1 58.06 ? C09 RNV 501 A 1 
HETATM 12 N N11 RNV . . . B 2 18.538 -11.717 41.471 1 59.04 ? N11 RNV 501 A 1 
HETATM 13 C C13 RNV . . . B 2 18.687 -13.686 43.062 1 53.63 ? C13 RNV 501 A 1 
HETATM 14 C C14 RNV . . . B 2 18.617 -12.183 40.083 1 56.41 ? C14 RNV 501 A 1 
HETATM 15 C C15 RNV . . . B 2 17.484 -11.593 39.239 1 59.73 ? C15 RNV 501 A 1 
HETATM 16 O O16 RNV . . . B 2 19.931 -7.237 41.552 1 58.34 ? O16 RNV 501 A 1 
HETATM 17 N N17 RNV . . . B 2 18.935 -9.831 36.21 1 42.52 ? N17 RNV 501 A 1 
HETATM 18 C C18 RNV . . . B 2 19.42 -10.882 35.535 1 40.78 ? C18 RNV 501 A 1 
HETATM 19 C C19 RNV . . . B 2 20.629 -11.444 35.96 1 39.24 ? C19 RNV 501 A 1 
HETATM 20 C C20 RNV . . . B 2 21.065 -12.636 35.11 1 37.68 ? C20 RNV 501 A 1 
HETATM 21 C C21 RNV . . . B 2 20.107 -12.85 34.093 1 38.9 ? C21 RNV 501 A 1 
HETATM 22 C C22 RNV . . . B 2 20.244 -13.976 33.042 1 38.48 ? C22 RNV 501 A 1 
HETATM 23 C C23 RNV . . . B 2 21.58 -14.777 33.156 1 38.86 ? C23 RNV 501 A 1 
HETATM 24 C C24 RNV . . . B 2 22.726 -14.015 33.865 1 37.1 ? C24 RNV 501 A 1 
HETATM 25 C C25 RNV . . . B 2 22.3 -13.501 35.237 1 36.73 ? C25 RNV 501 A 1 
HETATM 26 S S26 RNV . . . B 2 18.854 -11.722 34.217 1 41.13 ? S26 RNV 501 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           26 
#