data_6VV0 # _model_server_result.job_id btEvlV8saMTWfME_nzB30g _model_server_result.datetime_utc '2025-01-06 08:31:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vv0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":508}' # _entry.id 6VV0 # _exptl.entry_id 6VV0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6VV0 _cell.length_a 175.654 _cell.length_b 175.654 _cell.length_c 124.048 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VV0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 124.048 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 124.048 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 124.048 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 I N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6VV0 _atom_sites.fract_transf_matrix[1][1] 0.005693 _atom_sites.fract_transf_matrix[1][2] 0.003287 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RMV A 1 501 502 RMV J20 . C 3 PEG A 1 502 1 PEG PEG . D 3 PEG A 1 503 2 PEG PEG . E 4 DMS A 1 504 3 DMS DMS . F 4 DMS A 1 505 4 DMS DMS . G 5 SO4 A 1 506 6 SO4 SO4 . H 6 GOL A 1 507 7 GOL GOL . I 4 DMS A 1 508 8 DMS DMS . J 7 HOH A 1 601 4 HOH HOH . J 7 HOH A 2 602 93 HOH HOH . J 7 HOH A 3 603 7 HOH HOH . J 7 HOH A 4 604 109 HOH HOH . J 7 HOH A 5 605 130 HOH HOH . J 7 HOH A 6 606 21 HOH HOH . J 7 HOH A 7 607 12 HOH HOH . J 7 HOH A 8 608 199 HOH HOH . J 7 HOH A 9 609 187 HOH HOH . J 7 HOH A 10 610 196 HOH HOH . J 7 HOH A 11 611 164 HOH HOH . J 7 HOH A 12 612 146 HOH HOH . J 7 HOH A 13 613 137 HOH HOH . J 7 HOH A 14 614 116 HOH HOH . J 7 HOH A 15 615 142 HOH HOH . J 7 HOH A 16 616 55 HOH HOH . J 7 HOH A 17 617 118 HOH HOH . J 7 HOH A 18 618 5 HOH HOH . J 7 HOH A 19 619 148 HOH HOH . J 7 HOH A 20 620 139 HOH HOH . J 7 HOH A 21 621 181 HOH HOH . J 7 HOH A 22 622 149 HOH HOH . J 7 HOH A 23 623 123 HOH HOH . J 7 HOH A 24 624 14 HOH HOH . J 7 HOH A 25 625 8 HOH HOH . J 7 HOH A 26 626 126 HOH HOH . J 7 HOH A 27 627 107 HOH HOH . J 7 HOH A 28 628 168 HOH HOH . J 7 HOH A 29 629 29 HOH HOH . J 7 HOH A 30 630 178 HOH HOH . J 7 HOH A 31 631 124 HOH HOH . J 7 HOH A 32 632 129 HOH HOH . J 7 HOH A 33 633 188 HOH HOH . J 7 HOH A 34 634 191 HOH HOH . J 7 HOH A 35 635 154 HOH HOH . J 7 HOH A 36 636 52 HOH HOH . J 7 HOH A 37 637 138 HOH HOH . J 7 HOH A 38 638 157 HOH HOH . J 7 HOH A 39 639 128 HOH HOH . J 7 HOH A 40 640 162 HOH HOH . J 7 HOH A 41 641 141 HOH HOH . J 7 HOH A 42 642 170 HOH HOH . J 7 HOH A 43 643 193 HOH HOH . J 7 HOH A 44 644 171 HOH HOH . J 7 HOH A 45 645 172 HOH HOH . J 7 HOH A 46 646 134 HOH HOH . J 7 HOH A 47 647 175 HOH HOH . J 7 HOH A 48 648 151 HOH HOH . J 7 HOH A 49 649 153 HOH HOH . J 7 HOH A 50 650 195 HOH HOH . J 7 HOH A 51 651 182 HOH HOH . J 7 HOH A 52 652 200 HOH HOH . J 7 HOH A 53 653 131 HOH HOH . J 7 HOH A 54 654 115 HOH HOH . J 7 HOH A 55 655 183 HOH HOH . J 7 HOH A 56 656 125 HOH HOH . J 7 HOH A 57 657 189 HOH HOH . J 7 HOH A 58 658 140 HOH HOH . J 7 HOH A 59 659 150 HOH HOH . J 7 HOH A 60 660 176 HOH HOH . J 7 HOH A 61 661 132 HOH HOH . J 7 HOH A 62 662 186 HOH HOH . J 7 HOH A 63 663 117 HOH HOH . J 7 HOH A 64 664 144 HOH HOH . J 7 HOH A 65 665 192 HOH HOH . J 7 HOH A 66 666 136 HOH HOH . J 7 HOH A 67 667 152 HOH HOH . J 7 HOH A 68 668 180 HOH HOH . J 7 HOH A 69 669 104 HOH HOH . J 7 HOH A 70 670 167 HOH HOH . J 7 HOH A 71 671 113 HOH HOH . J 7 HOH A 72 672 179 HOH HOH . J 7 HOH A 73 673 190 HOH HOH . J 7 HOH A 74 674 127 HOH HOH . J 7 HOH A 75 675 169 HOH HOH . J 7 HOH A 76 676 155 HOH HOH . J 7 HOH A 77 677 166 HOH HOH . J 7 HOH A 78 678 197 HOH HOH . J 7 HOH A 79 679 145 HOH HOH . J 7 HOH A 80 680 120 HOH HOH . J 7 HOH A 81 681 114 HOH HOH . J 7 HOH A 82 682 177 HOH HOH . J 7 HOH A 83 683 143 HOH HOH . J 7 HOH A 84 684 163 HOH HOH . J 7 HOH A 85 685 108 HOH HOH . J 7 HOH A 86 686 201 HOH HOH . J 7 HOH A 87 687 165 HOH HOH . J 7 HOH A 88 688 194 HOH HOH . J 7 HOH A 89 689 160 HOH HOH . J 7 HOH A 90 690 119 HOH HOH . J 7 HOH A 91 691 173 HOH HOH . J 7 HOH A 92 692 156 HOH HOH . J 7 HOH A 93 693 122 HOH HOH . J 7 HOH A 94 694 121 HOH HOH . J 7 HOH A 95 695 185 HOH HOH . J 7 HOH A 96 696 158 HOH HOH . J 7 HOH A 97 697 159 HOH HOH . J 7 HOH A 98 698 110 HOH HOH . J 7 HOH A 99 699 111 HOH HOH . J 7 HOH A 100 700 161 HOH HOH . J 7 HOH A 101 701 133 HOH HOH . J 7 HOH A 102 702 174 HOH HOH . J 7 HOH A 103 703 135 HOH HOH . J 7 HOH A 104 704 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . I 4 27.966 1.803 49.153 1 53.3 ? S DMS 508 A 1 HETATM 2 O O DMS . . . I 4 28.914 0.711 49.637 1 48.63 ? O DMS 508 A 1 HETATM 3 C C1 DMS . . . I 4 26.702 1.007 48.169 1 52.17 ? C1 DMS 508 A 1 HETATM 4 C C2 DMS . . . I 4 28.783 2.739 47.87 1 48.93 ? C2 DMS 508 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #