data_6VV1 # _model_server_result.job_id e0BB6yNglCazYEnONwOGMA _model_server_result.datetime_utc '2025-01-07 19:45:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 6VV1 # _exptl.entry_id 6VV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6VV1 _cell.length_a 175.329 _cell.length_b 175.329 _cell.length_c 124.229 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 124.229 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 124.229 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 124.229 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 I N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OE1 _struct_conn.ptnr1_label_comp_id GLU _struct_conn.ptnr1_label_seq_id 368 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLU _struct_conn.ptnr1_auth_seq_id 348 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id M _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 512 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.793 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 6VV1 _atom_sites.fract_transf_matrix[1][1] 0.005704 _atom_sites.fract_transf_matrix[1][2] 0.003293 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RMJ A 1 501 502 RMJ H16 . C 3 PEG A 1 502 1 PEG PEG . D 3 PEG A 1 503 2 PEG PEG . E 4 GOL A 1 504 3 GOL GOL . F 4 GOL A 1 505 4 GOL GOL . G 5 SO4 A 1 506 5 SO4 SO4 . H 5 SO4 A 1 507 6 SO4 SO4 . I 4 GOL A 1 508 7 GOL GOL . J 6 DMS A 1 509 8 DMS DMS . K 5 SO4 A 1 510 9 SO4 SO4 . L 6 DMS A 1 511 10 DMS DMS . M 7 NA A 1 512 1 NA NA . N 8 HOH A 1 601 81 HOH HOH . N 8 HOH A 2 602 331 HOH HOH . N 8 HOH A 3 603 307 HOH HOH . N 8 HOH A 4 604 325 HOH HOH . N 8 HOH A 5 605 239 HOH HOH . N 8 HOH A 6 606 280 HOH HOH . N 8 HOH A 7 607 71 HOH HOH . N 8 HOH A 8 608 381 HOH HOH . N 8 HOH A 9 609 298 HOH HOH . N 8 HOH A 10 610 311 HOH HOH . N 8 HOH A 11 611 263 HOH HOH . N 8 HOH A 12 612 213 HOH HOH . N 8 HOH A 13 613 352 HOH HOH . N 8 HOH A 14 614 383 HOH HOH . N 8 HOH A 15 615 289 HOH HOH . N 8 HOH A 16 616 299 HOH HOH . N 8 HOH A 17 617 342 HOH HOH . N 8 HOH A 18 618 118 HOH HOH . N 8 HOH A 19 619 1 HOH HOH . N 8 HOH A 20 620 15 HOH HOH . N 8 HOH A 21 621 246 HOH HOH . N 8 HOH A 22 622 278 HOH HOH . N 8 HOH A 23 623 4 HOH HOH . N 8 HOH A 24 624 26 HOH HOH . N 8 HOH A 25 625 312 HOH HOH . N 8 HOH A 26 626 279 HOH HOH . N 8 HOH A 27 627 74 HOH HOH . N 8 HOH A 28 628 95 HOH HOH . N 8 HOH A 29 629 344 HOH HOH . N 8 HOH A 30 630 38 HOH HOH . N 8 HOH A 31 631 5 HOH HOH . N 8 HOH A 32 632 372 HOH HOH . N 8 HOH A 33 633 264 HOH HOH . N 8 HOH A 34 634 20 HOH HOH . N 8 HOH A 35 635 48 HOH HOH . N 8 HOH A 36 636 209 HOH HOH . N 8 HOH A 37 637 248 HOH HOH . N 8 HOH A 38 638 69 HOH HOH . N 8 HOH A 39 639 8 HOH HOH . N 8 HOH A 40 640 12 HOH HOH . N 8 HOH A 41 641 364 HOH HOH . N 8 HOH A 42 642 3 HOH HOH . N 8 HOH A 43 643 385 HOH HOH . N 8 HOH A 44 644 297 HOH HOH . N 8 HOH A 45 645 25 HOH HOH . N 8 HOH A 46 646 302 HOH HOH . N 8 HOH A 47 647 330 HOH HOH . N 8 HOH A 48 648 42 HOH HOH . N 8 HOH A 49 649 76 HOH HOH . N 8 HOH A 50 650 321 HOH HOH . N 8 HOH A 51 651 235 HOH HOH . N 8 HOH A 52 652 203 HOH HOH . N 8 HOH A 53 653 43 HOH HOH . N 8 HOH A 54 654 24 HOH HOH . N 8 HOH A 55 655 349 HOH HOH . N 8 HOH A 56 656 236 HOH HOH . N 8 HOH A 57 657 348 HOH HOH . N 8 HOH A 58 658 320 HOH HOH . N 8 HOH A 59 659 63 HOH HOH . N 8 HOH A 60 660 260 HOH HOH . N 8 HOH A 61 661 88 HOH HOH . N 8 HOH A 62 662 285 HOH HOH . N 8 HOH A 63 663 282 HOH HOH . N 8 HOH A 64 664 237 HOH HOH . N 8 HOH A 65 665 97 HOH HOH . N 8 HOH A 66 666 83 HOH HOH . N 8 HOH A 67 667 247 HOH HOH . N 8 HOH A 68 668 253 HOH HOH . N 8 HOH A 69 669 370 HOH HOH . N 8 HOH A 70 670 350 HOH HOH . N 8 HOH A 71 671 244 HOH HOH . N 8 HOH A 72 672 255 HOH HOH . N 8 HOH A 73 673 109 HOH HOH . N 8 HOH A 74 674 351 HOH HOH . N 8 HOH A 75 675 376 HOH HOH . N 8 HOH A 76 676 17 HOH HOH . N 8 HOH A 77 677 295 HOH HOH . N 8 HOH A 78 678 106 HOH HOH . N 8 HOH A 79 679 92 HOH HOH . N 8 HOH A 80 680 327 HOH HOH . N 8 HOH A 81 681 124 HOH HOH . N 8 HOH A 82 682 228 HOH HOH . N 8 HOH A 83 683 387 HOH HOH . N 8 HOH A 84 684 180 HOH HOH . N 8 HOH A 85 685 222 HOH HOH . N 8 HOH A 86 686 56 HOH HOH . N 8 HOH A 87 687 214 HOH HOH . N 8 HOH A 88 688 127 HOH HOH . N 8 HOH A 89 689 133 HOH HOH . N 8 HOH A 90 690 16 HOH HOH . N 8 HOH A 91 691 89 HOH HOH . N 8 HOH A 92 692 377 HOH HOH . N 8 HOH A 93 693 251 HOH HOH . N 8 HOH A 94 694 184 HOH HOH . N 8 HOH A 95 695 287 HOH HOH . N 8 HOH A 96 696 257 HOH HOH . N 8 HOH A 97 697 206 HOH HOH . N 8 HOH A 98 698 93 HOH HOH . N 8 HOH A 99 699 47 HOH HOH . N 8 HOH A 100 700 123 HOH HOH . N 8 HOH A 101 701 319 HOH HOH . N 8 HOH A 102 702 380 HOH HOH . N 8 HOH A 103 703 373 HOH HOH . N 8 HOH A 104 704 27 HOH HOH . N 8 HOH A 105 705 57 HOH HOH . N 8 HOH A 106 706 39 HOH HOH . N 8 HOH A 107 707 7 HOH HOH . N 8 HOH A 108 708 13 HOH HOH . N 8 HOH A 109 709 21 HOH HOH . N 8 HOH A 110 710 68 HOH HOH . N 8 HOH A 111 711 358 HOH HOH . N 8 HOH A 112 712 296 HOH HOH . N 8 HOH A 113 713 386 HOH HOH . N 8 HOH A 114 714 58 HOH HOH . N 8 HOH A 115 715 241 HOH HOH . N 8 HOH A 116 716 275 HOH HOH . N 8 HOH A 117 717 326 HOH HOH . N 8 HOH A 118 718 328 HOH HOH . N 8 HOH A 119 719 265 HOH HOH . N 8 HOH A 120 720 67 HOH HOH . N 8 HOH A 121 721 353 HOH HOH . N 8 HOH A 122 722 204 HOH HOH . N 8 HOH A 123 723 294 HOH HOH . N 8 HOH A 124 724 335 HOH HOH . N 8 HOH A 125 725 207 HOH HOH . N 8 HOH A 126 726 242 HOH HOH . N 8 HOH A 127 727 272 HOH HOH . N 8 HOH A 128 728 10 HOH HOH . N 8 HOH A 129 729 59 HOH HOH . N 8 HOH A 130 730 108 HOH HOH . N 8 HOH A 131 731 369 HOH HOH . N 8 HOH A 132 732 277 HOH HOH . N 8 HOH A 133 733 22 HOH HOH . N 8 HOH A 134 734 355 HOH HOH . N 8 HOH A 135 735 40 HOH HOH . N 8 HOH A 136 736 347 HOH HOH . N 8 HOH A 137 737 202 HOH HOH . N 8 HOH A 138 738 9 HOH HOH . N 8 HOH A 139 739 313 HOH HOH . N 8 HOH A 140 740 269 HOH HOH . N 8 HOH A 141 741 310 HOH HOH . N 8 HOH A 142 742 86 HOH HOH . N 8 HOH A 143 743 2 HOH HOH . N 8 HOH A 144 744 284 HOH HOH . N 8 HOH A 145 745 49 HOH HOH . N 8 HOH A 146 746 389 HOH HOH . N 8 HOH A 147 747 360 HOH HOH . N 8 HOH A 148 748 243 HOH HOH . N 8 HOH A 149 749 363 HOH HOH . N 8 HOH A 150 750 234 HOH HOH . N 8 HOH A 151 751 336 HOH HOH . N 8 HOH A 152 752 339 HOH HOH . N 8 HOH A 153 753 112 HOH HOH . N 8 HOH A 154 754 220 HOH HOH . N 8 HOH A 155 755 368 HOH HOH . N 8 HOH A 156 756 261 HOH HOH . N 8 HOH A 157 757 283 HOH HOH . N 8 HOH A 158 758 194 HOH HOH . N 8 HOH A 159 759 75 HOH HOH . N 8 HOH A 160 760 211 HOH HOH . N 8 HOH A 161 761 262 HOH HOH . N 8 HOH A 162 762 254 HOH HOH . N 8 HOH A 163 763 333 HOH HOH . N 8 HOH A 164 764 357 HOH HOH . N 8 HOH A 165 765 259 HOH HOH . N 8 HOH A 166 766 343 HOH HOH . N 8 HOH A 167 767 382 HOH HOH . N 8 HOH A 168 768 249 HOH HOH . N 8 HOH A 169 769 323 HOH HOH . N 8 HOH A 170 770 346 HOH HOH . N 8 HOH A 171 771 132 HOH HOH . N 8 HOH A 172 772 384 HOH HOH . N 8 HOH A 173 773 268 HOH HOH . N 8 HOH A 174 774 233 HOH HOH . N 8 HOH A 175 775 356 HOH HOH . N 8 HOH A 176 776 334 HOH HOH . N 8 HOH A 177 777 274 HOH HOH . N 8 HOH A 178 778 301 HOH HOH . N 8 HOH A 179 779 219 HOH HOH . N 8 HOH A 180 780 305 HOH HOH . N 8 HOH A 181 781 340 HOH HOH . N 8 HOH A 182 782 315 HOH HOH . N 8 HOH A 183 783 223 HOH HOH . N 8 HOH A 184 784 337 HOH HOH . N 8 HOH A 185 785 378 HOH HOH . N 8 HOH A 186 786 292 HOH HOH . N 8 HOH A 187 787 196 HOH HOH . N 8 HOH A 188 788 359 HOH HOH . N 8 HOH A 189 789 267 HOH HOH . N 8 HOH A 190 790 171 HOH HOH . N 8 HOH A 191 791 271 HOH HOH . N 8 HOH A 192 792 226 HOH HOH . N 8 HOH A 193 793 273 HOH HOH . N 8 HOH A 194 794 229 HOH HOH . N 8 HOH A 195 795 216 HOH HOH . N 8 HOH A 196 796 316 HOH HOH . N 8 HOH A 197 797 181 HOH HOH . N 8 HOH A 198 798 288 HOH HOH . N 8 HOH A 199 799 366 HOH HOH . N 8 HOH A 200 800 218 HOH HOH . N 8 HOH A 201 801 215 HOH HOH . N 8 HOH A 202 802 250 HOH HOH . N 8 HOH A 203 803 317 HOH HOH . N 8 HOH A 204 804 341 HOH HOH . N 8 HOH A 205 805 266 HOH HOH . N 8 HOH A 206 806 276 HOH HOH . N 8 HOH A 207 807 371 HOH HOH . N 8 HOH A 208 808 309 HOH HOH . N 8 HOH A 209 809 318 HOH HOH . N 8 HOH A 210 810 322 HOH HOH . N 8 HOH A 211 811 303 HOH HOH . N 8 HOH A 212 812 314 HOH HOH . N 8 HOH A 213 813 362 HOH HOH . N 8 HOH A 214 814 227 HOH HOH . N 8 HOH A 215 815 238 HOH HOH . N 8 HOH A 216 816 270 HOH HOH . N 8 HOH A 217 817 256 HOH HOH . N 8 HOH A 218 818 308 HOH HOH . N 8 HOH A 219 819 354 HOH HOH . N 8 HOH A 220 820 338 HOH HOH . N 8 HOH A 221 821 208 HOH HOH . N 8 HOH A 222 822 116 HOH HOH . N 8 HOH A 223 823 365 HOH HOH . N 8 HOH A 224 824 193 HOH HOH . N 8 HOH A 225 825 361 HOH HOH . N 8 HOH A 226 826 388 HOH HOH . N 8 HOH A 227 827 293 HOH HOH . N 8 HOH A 228 828 379 HOH HOH . N 8 HOH A 229 829 197 HOH HOH . N 8 HOH A 230 830 329 HOH HOH . N 8 HOH A 231 831 217 HOH HOH . N 8 HOH A 232 832 232 HOH HOH . N 8 HOH A 233 833 374 HOH HOH . N 8 HOH A 234 834 345 HOH HOH . N 8 HOH A 235 835 324 HOH HOH . N 8 HOH A 236 836 300 HOH HOH . N 8 HOH A 237 837 252 HOH HOH . N 8 HOH A 238 838 332 HOH HOH . N 8 HOH A 239 839 367 HOH HOH . N 8 HOH A 240 840 231 HOH HOH . N 8 HOH A 241 841 146 HOH HOH . N 8 HOH A 242 842 205 HOH HOH . N 8 HOH A 243 843 221 HOH HOH . N 8 HOH A 244 844 230 HOH HOH . N 8 HOH A 245 845 375 HOH HOH . N 8 HOH A 246 846 290 HOH HOH . N 8 HOH A 247 847 225 HOH HOH . N 8 HOH A 248 848 258 HOH HOH . N 8 HOH A 249 849 224 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 39.294 -24.451 45.687 1 72.01 ? C1 GOL 505 A 1 HETATM 2 O O1 GOL . . . F 4 39.479 -23.47 44.668 1 66.68 ? O1 GOL 505 A 1 HETATM 3 C C2 GOL . . . F 4 38.404 -25.6 45.245 1 71.9 ? C2 GOL 505 A 1 HETATM 4 O O2 GOL . . . F 4 37.736 -26.142 46.385 1 65 ? O2 GOL 505 A 1 HETATM 5 C C3 GOL . . . F 4 37.383 -25.222 44.185 1 70.7 ? C3 GOL 505 A 1 HETATM 6 O O3 GOL . . . F 4 36.734 -26.364 43.627 1 65.46 ? O3 GOL 505 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 398 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #