data_6VV2 # _model_server_result.job_id O8hPElHc1O2cc9OoA5wlqQ _model_server_result.datetime_utc '2025-01-07 19:11:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6VV2 # _exptl.entry_id 6VV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 376.582 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{[3-(piperidin-1-yl)propyl]sulfanyl}-6,7,8,9-tetrahydro-5H-cyclohepta[4,5]thieno[2,3-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6VV2 _cell.length_a 175.596 _cell.length_b 175.596 _cell.length_c 123.975 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 123.975 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 123.975 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 123.975 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id ALA _struct_conn.ptnr1_label_seq_id 392 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ALA _struct_conn.ptnr1_auth_seq_id 372 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 506 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.471 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H28 N4 S2' _chem_comp.formula_weight 376.582 _chem_comp.id RMG _chem_comp.mon_nstd_flag . _chem_comp.name 2-{[3-(piperidin-1-yl)propyl]sulfanyl}-6,7,8,9-tetrahydro-5H-cyclohepta[4,5]thieno[2,3-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C22 RMG sing 315 n n C21 C20 RMG sing 316 n n C22 C23 RMG sing 317 n n C20 C19 RMG sing 318 n n C23 C24 RMG sing 319 n n C19 S25 RMG sing 320 n y C19 C18 RMG doub 321 n y S25 C16 RMG sing 322 n y C18 C24 RMG sing 323 n n C18 C17 RMG sing 324 n y C16 C17 RMG doub 325 n y C16 N15 RMG sing 326 n y C17 C02 RMG sing 327 n y N15 C04 RMG doub 328 n y C02 N01 RMG sing 329 n n C02 N03 RMG doub 330 n y C04 N03 RMG sing 331 n y C04 S05 RMG sing 332 n n S05 C06 RMG sing 333 n n C06 C07 RMG sing 334 n n C07 C08 RMG sing 335 n n C08 N09 RMG sing 336 n n N09 C14 RMG sing 337 n n N09 C10 RMG sing 338 n n C14 C13 RMG sing 339 n n C10 C11 RMG sing 340 n n C13 C12 RMG sing 341 n n C11 C12 RMG sing 342 n n C10 H1 RMG sing 343 n n C10 H2 RMG sing 344 n n C11 H3 RMG sing 345 n n C11 H4 RMG sing 346 n n C12 H5 RMG sing 347 n n C12 H6 RMG sing 348 n n C13 H7 RMG sing 349 n n C13 H8 RMG sing 350 n n C14 H9 RMG sing 351 n n C14 H10 RMG sing 352 n n N01 H11 RMG sing 353 n n N01 H12 RMG sing 354 n n C06 H13 RMG sing 355 n n C06 H14 RMG sing 356 n n C07 H15 RMG sing 357 n n C07 H16 RMG sing 358 n n C08 H17 RMG sing 359 n n C08 H18 RMG sing 360 n n C20 H20 RMG sing 361 n n C20 H21 RMG sing 362 n n C21 H22 RMG sing 363 n n C21 H23 RMG sing 364 n n C22 H24 RMG sing 365 n n C22 H25 RMG sing 366 n n C23 H26 RMG sing 367 n n C23 H27 RMG sing 368 n n C24 H28 RMG sing 369 n n C24 H29 RMG sing 370 n n # _atom_sites.entry_id 6VV2 _atom_sites.fract_transf_matrix[1][1] 0.005695 _atom_sites.fract_transf_matrix[1][2] 0.003288 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RMG A 1 501 502 RMG H06 . C 3 PEG A 1 502 1 PEG PEG . D 4 GOL A 1 503 2 GOL GOL . E 5 SO4 A 1 504 3 SO4 SO4 . F 6 DMS A 1 505 4 DMS DMS . G 7 NA A 1 506 5 NA NA . H 8 CL A 1 507 6 CL CL . I 9 HOH A 1 601 10 HOH HOH . I 9 HOH A 2 602 230 HOH HOH . I 9 HOH A 3 603 139 HOH HOH . I 9 HOH A 4 604 205 HOH HOH . I 9 HOH A 5 605 150 HOH HOH . I 9 HOH A 6 606 149 HOH HOH . I 9 HOH A 7 607 208 HOH HOH . I 9 HOH A 8 608 147 HOH HOH . I 9 HOH A 9 609 21 HOH HOH . I 9 HOH A 10 610 133 HOH HOH . I 9 HOH A 11 611 116 HOH HOH . I 9 HOH A 12 612 88 HOH HOH . I 9 HOH A 13 613 115 HOH HOH . I 9 HOH A 14 614 231 HOH HOH . I 9 HOH A 15 615 159 HOH HOH . I 9 HOH A 16 616 225 HOH HOH . I 9 HOH A 17 617 112 HOH HOH . I 9 HOH A 18 618 176 HOH HOH . I 9 HOH A 19 619 216 HOH HOH . I 9 HOH A 20 620 224 HOH HOH . I 9 HOH A 21 621 245 HOH HOH . I 9 HOH A 22 622 201 HOH HOH . I 9 HOH A 23 623 47 HOH HOH . I 9 HOH A 24 624 114 HOH HOH . I 9 HOH A 25 625 242 HOH HOH . I 9 HOH A 26 626 173 HOH HOH . I 9 HOH A 27 627 31 HOH HOH . I 9 HOH A 28 628 91 HOH HOH . I 9 HOH A 29 629 134 HOH HOH . I 9 HOH A 30 630 157 HOH HOH . I 9 HOH A 31 631 98 HOH HOH . I 9 HOH A 32 632 5 HOH HOH . I 9 HOH A 33 633 109 HOH HOH . I 9 HOH A 34 634 223 HOH HOH . I 9 HOH A 35 635 16 HOH HOH . I 9 HOH A 36 636 207 HOH HOH . I 9 HOH A 37 637 106 HOH HOH . I 9 HOH A 38 638 11 HOH HOH . I 9 HOH A 39 639 104 HOH HOH . I 9 HOH A 40 640 108 HOH HOH . I 9 HOH A 41 641 167 HOH HOH . I 9 HOH A 42 642 171 HOH HOH . I 9 HOH A 43 643 74 HOH HOH . I 9 HOH A 44 644 144 HOH HOH . I 9 HOH A 45 645 244 HOH HOH . I 9 HOH A 46 646 170 HOH HOH . I 9 HOH A 47 647 1 HOH HOH . I 9 HOH A 48 648 124 HOH HOH . I 9 HOH A 49 649 128 HOH HOH . I 9 HOH A 50 650 218 HOH HOH . I 9 HOH A 51 651 143 HOH HOH . I 9 HOH A 52 652 110 HOH HOH . I 9 HOH A 53 653 190 HOH HOH . I 9 HOH A 54 654 178 HOH HOH . I 9 HOH A 55 655 227 HOH HOH . I 9 HOH A 56 656 219 HOH HOH . I 9 HOH A 57 657 232 HOH HOH . I 9 HOH A 58 658 103 HOH HOH . I 9 HOH A 59 659 18 HOH HOH . I 9 HOH A 60 660 119 HOH HOH . I 9 HOH A 61 661 129 HOH HOH . I 9 HOH A 62 662 206 HOH HOH . I 9 HOH A 63 663 237 HOH HOH . I 9 HOH A 64 664 145 HOH HOH . I 9 HOH A 65 665 243 HOH HOH . I 9 HOH A 66 666 76 HOH HOH . I 9 HOH A 67 667 214 HOH HOH . I 9 HOH A 68 668 154 HOH HOH . I 9 HOH A 69 669 236 HOH HOH . I 9 HOH A 70 670 220 HOH HOH . I 9 HOH A 71 671 253 HOH HOH . I 9 HOH A 72 672 174 HOH HOH . I 9 HOH A 73 673 204 HOH HOH . I 9 HOH A 74 674 140 HOH HOH . I 9 HOH A 75 675 188 HOH HOH . I 9 HOH A 76 676 210 HOH HOH . I 9 HOH A 77 677 125 HOH HOH . I 9 HOH A 78 678 249 HOH HOH . I 9 HOH A 79 679 172 HOH HOH . I 9 HOH A 80 680 126 HOH HOH . I 9 HOH A 81 681 163 HOH HOH . I 9 HOH A 82 682 130 HOH HOH . I 9 HOH A 83 683 156 HOH HOH . I 9 HOH A 84 684 141 HOH HOH . I 9 HOH A 85 685 203 HOH HOH . I 9 HOH A 86 686 142 HOH HOH . I 9 HOH A 87 687 3 HOH HOH . I 9 HOH A 88 688 70 HOH HOH . I 9 HOH A 89 689 46 HOH HOH . I 9 HOH A 90 690 180 HOH HOH . I 9 HOH A 91 691 137 HOH HOH . I 9 HOH A 92 692 183 HOH HOH . I 9 HOH A 93 693 177 HOH HOH . I 9 HOH A 94 694 217 HOH HOH . I 9 HOH A 95 695 123 HOH HOH . I 9 HOH A 96 696 240 HOH HOH . I 9 HOH A 97 697 196 HOH HOH . I 9 HOH A 98 698 121 HOH HOH . I 9 HOH A 99 699 184 HOH HOH . I 9 HOH A 100 700 186 HOH HOH . I 9 HOH A 101 701 221 HOH HOH . I 9 HOH A 102 702 175 HOH HOH . I 9 HOH A 103 703 148 HOH HOH . I 9 HOH A 104 704 113 HOH HOH . I 9 HOH A 105 705 127 HOH HOH . I 9 HOH A 106 706 152 HOH HOH . I 9 HOH A 107 707 165 HOH HOH . I 9 HOH A 108 708 215 HOH HOH . I 9 HOH A 109 709 235 HOH HOH . I 9 HOH A 110 710 213 HOH HOH . I 9 HOH A 111 711 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 RMG . . . B 2 18.503 -10.889 43.908 1 96.86 ? C10 RMG 501 A 1 HETATM 2 C C11 RMG . . . B 2 18.84 -12.211 44.642 1 96.15 ? C11 RMG 501 A 1 HETATM 3 C C12 RMG . . . B 2 20.108 -12.214 45.348 1 83.97 ? C12 RMG 501 A 1 HETATM 4 C C13 RMG . . . B 2 21.185 -11.692 44.543 1 78.09 ? C13 RMG 501 A 1 HETATM 5 C C14 RMG . . . B 2 20.855 -10.343 43.877 1 84.69 ? C14 RMG 501 A 1 HETATM 6 N N01 RMG . . . B 2 22.658 -11.896 37.436 1 51.16 ? N01 RMG 501 A 1 HETATM 7 C C02 RMG . . . B 2 21.468 -11.165 37.095 1 51.27 ? C02 RMG 501 A 1 HETATM 8 N N03 RMG . . . B 2 21.105 -10.103 37.799 1 54.96 ? N03 RMG 501 A 1 HETATM 9 C C04 RMG . . . B 2 20.026 -9.367 37.525 1 56.85 ? C04 RMG 501 A 1 HETATM 10 S S05 RMG . . . B 2 19.71 -7.911 38.625 1 58.29 ? S05 RMG 501 A 1 HETATM 11 C C06 RMG . . . B 2 20.205 -8.155 40.398 1 60.06 ? C06 RMG 501 A 1 HETATM 12 C C07 RMG . . . B 2 19.23 -9.118 41.143 1 70.58 ? C07 RMG 501 A 1 HETATM 13 C C08 RMG . . . B 2 19.341 -9.189 42.708 1 79.99 ? C08 RMG 501 A 1 HETATM 14 N N09 RMG . . . B 2 19.601 -10.316 43.145 1 93.02 ? N09 RMG 501 A 1 HETATM 15 N N15 RMG . . . B 2 19.239 -9.689 36.488 1 55.45 ? N15 RMG 501 A 1 HETATM 16 C C16 RMG . . . B 2 19.529 -10.784 35.712 1 56.42 ? C16 RMG 501 A 1 HETATM 17 C C17 RMG . . . B 2 20.666 -11.554 36.002 1 54.15 ? C17 RMG 501 A 1 HETATM 18 C C18 RMG . . . B 2 20.901 -12.761 35.057 1 52.32 ? C18 RMG 501 A 1 HETATM 19 C C19 RMG . . . B 2 19.859 -12.808 34.08 1 53.21 ? C19 RMG 501 A 1 HETATM 20 C C20 RMG . . . B 2 19.697 -13.864 32.952 1 49.65 ? C20 RMG 501 A 1 HETATM 21 C C21 RMG . . . B 2 20.93 -14.129 32.1 1 45.92 ? C21 RMG 501 A 1 HETATM 22 C C22 RMG . . . B 2 21.974 -14.911 32.869 1 46.04 ? C22 RMG 501 A 1 HETATM 23 C C23 RMG . . . B 2 22.754 -14.006 33.799 1 46.29 ? C23 RMG 501 A 1 HETATM 24 C C24 RMG . . . B 2 22.057 -13.781 35.128 1 48.01 ? C24 RMG 501 A 1 HETATM 25 S S25 RMG . . . B 2 18.799 -11.514 34.363 1 57.87 ? S25 RMG 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 25 #