data_6VV2 # _model_server_result.job_id 5Mjaw610pArAaLHOEm90qA _model_server_result.datetime_utc '2025-01-07 19:28:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 6VV2 # _exptl.entry_id 6VV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6VV2 _cell.length_a 175.596 _cell.length_b 175.596 _cell.length_c 123.975 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 123.975 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 123.975 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 123.975 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id ALA _struct_conn.ptnr1_label_seq_id 392 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ALA _struct_conn.ptnr1_auth_seq_id 372 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 506 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.471 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6VV2 _atom_sites.fract_transf_matrix[1][1] 0.005695 _atom_sites.fract_transf_matrix[1][2] 0.003288 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RMG A 1 501 502 RMG H06 . C 3 PEG A 1 502 1 PEG PEG . D 4 GOL A 1 503 2 GOL GOL . E 5 SO4 A 1 504 3 SO4 SO4 . F 6 DMS A 1 505 4 DMS DMS . G 7 NA A 1 506 5 NA NA . H 8 CL A 1 507 6 CL CL . I 9 HOH A 1 601 10 HOH HOH . I 9 HOH A 2 602 230 HOH HOH . I 9 HOH A 3 603 139 HOH HOH . I 9 HOH A 4 604 205 HOH HOH . I 9 HOH A 5 605 150 HOH HOH . I 9 HOH A 6 606 149 HOH HOH . I 9 HOH A 7 607 208 HOH HOH . I 9 HOH A 8 608 147 HOH HOH . I 9 HOH A 9 609 21 HOH HOH . I 9 HOH A 10 610 133 HOH HOH . I 9 HOH A 11 611 116 HOH HOH . I 9 HOH A 12 612 88 HOH HOH . I 9 HOH A 13 613 115 HOH HOH . I 9 HOH A 14 614 231 HOH HOH . I 9 HOH A 15 615 159 HOH HOH . I 9 HOH A 16 616 225 HOH HOH . I 9 HOH A 17 617 112 HOH HOH . I 9 HOH A 18 618 176 HOH HOH . I 9 HOH A 19 619 216 HOH HOH . I 9 HOH A 20 620 224 HOH HOH . I 9 HOH A 21 621 245 HOH HOH . I 9 HOH A 22 622 201 HOH HOH . I 9 HOH A 23 623 47 HOH HOH . I 9 HOH A 24 624 114 HOH HOH . I 9 HOH A 25 625 242 HOH HOH . I 9 HOH A 26 626 173 HOH HOH . I 9 HOH A 27 627 31 HOH HOH . I 9 HOH A 28 628 91 HOH HOH . I 9 HOH A 29 629 134 HOH HOH . I 9 HOH A 30 630 157 HOH HOH . I 9 HOH A 31 631 98 HOH HOH . I 9 HOH A 32 632 5 HOH HOH . I 9 HOH A 33 633 109 HOH HOH . I 9 HOH A 34 634 223 HOH HOH . I 9 HOH A 35 635 16 HOH HOH . I 9 HOH A 36 636 207 HOH HOH . I 9 HOH A 37 637 106 HOH HOH . I 9 HOH A 38 638 11 HOH HOH . I 9 HOH A 39 639 104 HOH HOH . I 9 HOH A 40 640 108 HOH HOH . I 9 HOH A 41 641 167 HOH HOH . I 9 HOH A 42 642 171 HOH HOH . I 9 HOH A 43 643 74 HOH HOH . I 9 HOH A 44 644 144 HOH HOH . I 9 HOH A 45 645 244 HOH HOH . I 9 HOH A 46 646 170 HOH HOH . I 9 HOH A 47 647 1 HOH HOH . I 9 HOH A 48 648 124 HOH HOH . I 9 HOH A 49 649 128 HOH HOH . I 9 HOH A 50 650 218 HOH HOH . I 9 HOH A 51 651 143 HOH HOH . I 9 HOH A 52 652 110 HOH HOH . I 9 HOH A 53 653 190 HOH HOH . I 9 HOH A 54 654 178 HOH HOH . I 9 HOH A 55 655 227 HOH HOH . I 9 HOH A 56 656 219 HOH HOH . I 9 HOH A 57 657 232 HOH HOH . I 9 HOH A 58 658 103 HOH HOH . I 9 HOH A 59 659 18 HOH HOH . I 9 HOH A 60 660 119 HOH HOH . I 9 HOH A 61 661 129 HOH HOH . I 9 HOH A 62 662 206 HOH HOH . I 9 HOH A 63 663 237 HOH HOH . I 9 HOH A 64 664 145 HOH HOH . I 9 HOH A 65 665 243 HOH HOH . I 9 HOH A 66 666 76 HOH HOH . I 9 HOH A 67 667 214 HOH HOH . I 9 HOH A 68 668 154 HOH HOH . I 9 HOH A 69 669 236 HOH HOH . I 9 HOH A 70 670 220 HOH HOH . I 9 HOH A 71 671 253 HOH HOH . I 9 HOH A 72 672 174 HOH HOH . I 9 HOH A 73 673 204 HOH HOH . I 9 HOH A 74 674 140 HOH HOH . I 9 HOH A 75 675 188 HOH HOH . I 9 HOH A 76 676 210 HOH HOH . I 9 HOH A 77 677 125 HOH HOH . I 9 HOH A 78 678 249 HOH HOH . I 9 HOH A 79 679 172 HOH HOH . I 9 HOH A 80 680 126 HOH HOH . I 9 HOH A 81 681 163 HOH HOH . I 9 HOH A 82 682 130 HOH HOH . I 9 HOH A 83 683 156 HOH HOH . I 9 HOH A 84 684 141 HOH HOH . I 9 HOH A 85 685 203 HOH HOH . I 9 HOH A 86 686 142 HOH HOH . I 9 HOH A 87 687 3 HOH HOH . I 9 HOH A 88 688 70 HOH HOH . I 9 HOH A 89 689 46 HOH HOH . I 9 HOH A 90 690 180 HOH HOH . I 9 HOH A 91 691 137 HOH HOH . I 9 HOH A 92 692 183 HOH HOH . I 9 HOH A 93 693 177 HOH HOH . I 9 HOH A 94 694 217 HOH HOH . I 9 HOH A 95 695 123 HOH HOH . I 9 HOH A 96 696 240 HOH HOH . I 9 HOH A 97 697 196 HOH HOH . I 9 HOH A 98 698 121 HOH HOH . I 9 HOH A 99 699 184 HOH HOH . I 9 HOH A 100 700 186 HOH HOH . I 9 HOH A 101 701 221 HOH HOH . I 9 HOH A 102 702 175 HOH HOH . I 9 HOH A 103 703 148 HOH HOH . I 9 HOH A 104 704 113 HOH HOH . I 9 HOH A 105 705 127 HOH HOH . I 9 HOH A 106 706 152 HOH HOH . I 9 HOH A 107 707 165 HOH HOH . I 9 HOH A 108 708 215 HOH HOH . I 9 HOH A 109 709 235 HOH HOH . I 9 HOH A 110 710 213 HOH HOH . I 9 HOH A 111 711 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 6 45.657 -0.127 51.651 1 89.49 ? S DMS 505 A 1 HETATM 2 O O DMS . . . F 6 46.447 -0.663 50.487 1 82.9 ? O DMS 505 A 1 HETATM 3 C C1 DMS . . . F 6 46.789 0.866 52.605 1 89.82 ? C1 DMS 505 A 1 HETATM 4 C C2 DMS . . . F 6 45.492 -1.467 52.803 1 87.42 ? C2 DMS 505 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #