data_6VV6
#
_model_server_result.job_id            bwT-e1jy94-CEi9cUZjhGQ 
_model_server_result.datetime_utc      '2024-11-23 13:11:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vv6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    6VV6 
#
_exptl.entry_id    6VV6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VV6 
_cell.length_a            60.681 
_cell.length_b            71.812 
_cell.length_c            72.041 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VV6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,J 1 1 
B,F,G,H,I,K 2 1 
A,B,C,D,E,F,G,H,I,J,K 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 40 A HIS 38 1_555 C CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? 
metalc ? metalc2 C CO CO . A CO 201 1_555 J O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? 
metalc ? metalc3 C CO CO . A CO 201 1_555 B NE2 HIS 159 B HIS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc4 C CO CO . A CO 201 1_555 K O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc5 B NE2 HIS 40 B HIS 38 1_555 F CO CO . B CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc6 F CO CO . B CO 201 1_555 K O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc7 F CO CO . B CO 201 1_555 K O HOH . B HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     6VV6 
_atom_sites.fract_transf_matrix[1][1]    0.01648 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013925 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013881 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CO A 1 201 2 CO CO . 
D 3 NAP A 1 202 1 NAP NDP . 
E 4 RPJ A 1 203 1 RPJ LIG . 
F 2 CO B 1 201 1 CO CO . 
G 3 NAP B 1 202 2 NAP NDP . 
H 4 RPJ B 1 203 2 RPJ LIG . 
I 5 SO4 B 1 204 1 SO4 SO4 . 
J 6 HOH A 1 301 12 HOH HOH . 
J 6 HOH A 2 302 28 HOH HOH . 
J 6 HOH A 3 303 1 HOH HOH . 
J 6 HOH A 4 304 2 HOH HOH . 
J 6 HOH A 5 305 40 HOH HOH . 
J 6 HOH A 6 306 41 HOH HOH . 
J 6 HOH A 7 307 15 HOH HOH . 
J 6 HOH A 8 308 84 HOH HOH . 
J 6 HOH A 9 309 36 HOH HOH . 
J 6 HOH A 10 310 60 HOH HOH . 
J 6 HOH A 11 311 8 HOH HOH . 
J 6 HOH A 12 312 4 HOH HOH . 
J 6 HOH A 13 313 5 HOH HOH . 
J 6 HOH A 14 314 16 HOH HOH . 
J 6 HOH A 15 315 66 HOH HOH . 
J 6 HOH A 16 316 11 HOH HOH . 
J 6 HOH A 17 317 59 HOH HOH . 
J 6 HOH A 18 318 20 HOH HOH . 
J 6 HOH A 19 319 34 HOH HOH . 
J 6 HOH A 20 320 17 HOH HOH . 
J 6 HOH A 21 321 19 HOH HOH . 
J 6 HOH A 22 322 69 HOH HOH . 
J 6 HOH A 23 323 55 HOH HOH . 
J 6 HOH A 24 324 29 HOH HOH . 
J 6 HOH A 25 325 38 HOH HOH . 
J 6 HOH A 26 326 25 HOH HOH . 
J 6 HOH A 27 327 63 HOH HOH . 
J 6 HOH A 28 328 30 HOH HOH . 
J 6 HOH A 29 329 43 HOH HOH . 
J 6 HOH A 30 330 3 HOH HOH . 
J 6 HOH A 31 331 14 HOH HOH . 
J 6 HOH A 32 332 56 HOH HOH . 
J 6 HOH A 33 333 35 HOH HOH . 
J 6 HOH A 34 334 62 HOH HOH . 
J 6 HOH A 35 335 91 HOH HOH . 
J 6 HOH A 36 336 52 HOH HOH . 
J 6 HOH A 37 337 73 HOH HOH . 
J 6 HOH A 38 338 64 HOH HOH . 
J 6 HOH A 39 339 82 HOH HOH . 
J 6 HOH A 40 340 88 HOH HOH . 
J 6 HOH A 41 341 6 HOH HOH . 
J 6 HOH A 42 342 76 HOH HOH . 
J 6 HOH A 43 343 33 HOH HOH . 
J 6 HOH A 44 344 68 HOH HOH . 
K 6 HOH B 1 301 31 HOH HOH . 
K 6 HOH B 2 302 27 HOH HOH . 
K 6 HOH B 3 303 9 HOH HOH . 
K 6 HOH B 4 304 18 HOH HOH . 
K 6 HOH B 5 305 22 HOH HOH . 
K 6 HOH B 6 306 10 HOH HOH . 
K 6 HOH B 7 307 26 HOH HOH . 
K 6 HOH B 8 308 37 HOH HOH . 
K 6 HOH B 9 309 24 HOH HOH . 
K 6 HOH B 10 310 42 HOH HOH . 
K 6 HOH B 11 311 86 HOH HOH . 
K 6 HOH B 12 312 7 HOH HOH . 
K 6 HOH B 13 313 32 HOH HOH . 
K 6 HOH B 14 314 23 HOH HOH . 
K 6 HOH B 15 315 78 HOH HOH . 
K 6 HOH B 16 316 57 HOH HOH . 
K 6 HOH B 17 317 46 HOH HOH . 
K 6 HOH B 18 318 53 HOH HOH . 
K 6 HOH B 19 319 44 HOH HOH . 
K 6 HOH B 20 320 13 HOH HOH . 
K 6 HOH B 21 321 45 HOH HOH . 
K 6 HOH B 22 322 39 HOH HOH . 
K 6 HOH B 23 323 58 HOH HOH . 
K 6 HOH B 24 324 48 HOH HOH . 
K 6 HOH B 25 325 49 HOH HOH . 
K 6 HOH B 26 326 87 HOH HOH . 
K 6 HOH B 27 327 67 HOH HOH . 
K 6 HOH B 28 328 70 HOH HOH . 
K 6 HOH B 29 329 89 HOH HOH . 
K 6 HOH B 30 330 90 HOH HOH . 
K 6 HOH B 31 331 85 HOH HOH . 
K 6 HOH B 32 332 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . D 3 -0.051 6.301 18.907 1 18.51 ? PA NAP 202 A 1 
HETATM 2 O O1A NAP . . . D 3 0.667 6.757 20.119 1 18.02 ? O1A NAP 202 A 1 
HETATM 3 O O2A NAP . . . D 3 0.591 5.318 17.977 1 18.48 ? O2A NAP 202 A 1 
HETATM 4 O O5B NAP . . . D 3 -0.455 7.689 18.073 1 19.79 ? O5B NAP 202 A 1 
HETATM 5 C C5B NAP . . . D 3 -1.645 7.42 17.346 1 17.23 ? C5B NAP 202 A 1 
HETATM 6 C C4B NAP . . . D 3 -1.979 8.689 16.541 1 20.32 ? C4B NAP 202 A 1 
HETATM 7 O O4B NAP . . . D 3 -0.972 8.924 15.567 1 19.08 ? O4B NAP 202 A 1 
HETATM 8 C C3B NAP . . . D 3 -3.32 8.609 15.78 1 25.18 ? C3B NAP 202 A 1 
HETATM 9 O O3B NAP . . . D 3 -4.396 8.814 16.624 1 22.66 ? O3B NAP 202 A 1 
HETATM 10 C C2B NAP . . . D 3 -3.111 9.842 14.873 1 20.95 ? C2B NAP 202 A 1 
HETATM 11 O O2B NAP . . . D 3 -3.187 11.022 15.523 1 21.61 ? O2B NAP 202 A 1 
HETATM 12 C C1B NAP . . . D 3 -1.589 9.568 14.458 1 19.87 ? C1B NAP 202 A 1 
HETATM 13 N N9A NAP . . . D 3 -1.463 8.67 13.304 1 19.21 ? N9A NAP 202 A 1 
HETATM 14 C C8A NAP . . . D 3 -1.753 7.305 13.247 1 20.79 ? C8A NAP 202 A 1 
HETATM 15 N N7A NAP . . . D 3 -1.551 6.761 12.033 1 26.68 ? N7A NAP 202 A 1 
HETATM 16 C C5A NAP . . . D 3 -1.109 7.834 11.259 1 20.81 ? C5A NAP 202 A 1 
HETATM 17 C C6A NAP . . . D 3 -0.726 7.917 9.916 1 24.39 ? C6A NAP 202 A 1 
HETATM 18 N N6A NAP . . . D 3 -0.76 6.798 9.117 1 20.6 ? N6A NAP 202 A 1 
HETATM 19 N N1A NAP . . . D 3 -0.309 9.093 9.371 1 25.81 ? N1A NAP 202 A 1 
HETATM 20 C C2A NAP . . . D 3 -0.308 10.165 10.236 1 21.9 ? C2A NAP 202 A 1 
HETATM 21 N N3A NAP . . . D 3 -0.641 10.249 11.529 1 21.1 ? N3A NAP 202 A 1 
HETATM 22 C C4A NAP . . . D 3 -1.048 9.038 12.038 1 21 ? C4A NAP 202 A 1 
HETATM 23 O O3 NAP . . . D 3 -1.481 5.667 19.529 1 20.01 ? O3 NAP 202 A 1 
HETATM 24 P PN NAP . . . D 3 -1.377 4.197 20.17 1 15.91 ? PN NAP 202 A 1 
HETATM 25 O O1N NAP . . . D 3 -2.575 4.081 21.023 1 18.56 ? O1N NAP 202 A 1 
HETATM 26 O O2N NAP . . . D 3 -1.007 3.063 19.243 1 15.45 ? O2N NAP 202 A 1 
HETATM 27 O O5D NAP . . . D 3 -0.01 4.078 21.311 1 19.05 ? O5D NAP 202 A 1 
HETATM 28 C C5D NAP . . . D 3 -0.302 4.642 22.546 1 17.58 ? C5D NAP 202 A 1 
HETATM 29 C C4D NAP . . . D 3 0.23 3.704 23.658 1 16.16 ? C4D NAP 202 A 1 
HETATM 30 O O4D NAP . . . D 3 1.659 3.414 23.563 1 16.42 ? O4D NAP 202 A 1 
HETATM 31 C C3D NAP . . . D 3 0.028 4.393 25.001 1 14.86 ? C3D NAP 202 A 1 
HETATM 32 O O3D NAP . . . D 3 -0.689 3.509 25.776 1 18.24 ? O3D NAP 202 A 1 
HETATM 33 C C2D NAP . . . D 3 1.492 4.596 25.509 1 15.67 ? C2D NAP 202 A 1 
HETATM 34 O O2D NAP . . . D 3 1.616 4.507 26.864 1 15.97 ? O2D NAP 202 A 1 
HETATM 35 C C1D NAP . . . D 3 2.177 3.375 24.876 1 15.88 ? C1D NAP 202 A 1 
HETATM 36 N N1N NAP . . . D 3 3.648 3.533 24.799 1 14.26 ? N1N NAP 202 A 1 
HETATM 37 C C2N NAP . . . D 3 4.454 2.602 25.4 1 12.32 ? C2N NAP 202 A 1 
HETATM 38 C C3N NAP . . . D 3 5.793 2.6 25.177 1 11.57 ? C3N NAP 202 A 1 
HETATM 39 C C7N NAP . . . D 3 6.547 1.582 25.838 1 11.75 ? C7N NAP 202 A 1 
HETATM 40 O O7N NAP . . . D 3 6.06 0.687 26.539 1 13.32 ? O7N NAP 202 A 1 
HETATM 41 N N7N NAP . . . D 3 7.907 1.651 25.652 1 11.38 ? N7N NAP 202 A 1 
HETATM 42 C C4N NAP . . . D 3 6.474 3.595 24.313 1 15.58 ? C4N NAP 202 A 1 
HETATM 43 C C5N NAP . . . D 3 5.533 4.631 23.824 1 13.28 ? C5N NAP 202 A 1 
HETATM 44 C C6N NAP . . . D 3 4.228 4.582 24.063 1 13.09 ? C6N NAP 202 A 1 
HETATM 45 P P2B NAP . . . D 3 -4.737 11.988 15.216 1 22.08 ? P2B NAP 202 A 1 
HETATM 46 O O1X NAP . . . D 3 -4.62 11.988 13.729 1 30.55 ? O1X NAP 202 A 1 
HETATM 47 O O2X NAP . . . D 3 -5.865 11.137 15.812 1 28.41 ? O2X NAP 202 A 1 
HETATM 48 O O3X NAP . . . D 3 -4.377 13.256 15.933 1 22.2 ? O3X NAP 202 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           48 
#