data_6VV7 # _model_server_result.job_id crhPRGNYavAqWd0QeRSh9Q _model_server_result.datetime_utc '2024-11-27 05:01:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vv7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 6VV7 # _exptl.entry_id 6VV7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VV7 _cell.length_a 61.505 _cell.length_b 72.018 _cell.length_c 72.044 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VV7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,N 1 1 B,I,J,K,L,M,O 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 40 A HIS 38 1_555 D CO CO . A CO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc2 D CO CO . A CO 202 1_555 N O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc3 D CO CO . A CO 202 1_555 N O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc4 D CO CO . A CO 202 1_555 N O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc5 D CO CO . A CO 202 1_555 B NE2 HIS 159 B HIS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc6 D CO CO . A CO 202 1_555 O O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc7 B NE2 HIS 40 B HIS 38 1_555 J CO CO . B CO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc8 J CO CO . B CO 202 1_555 O O HOH . B HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 6VV7 _atom_sites.fract_transf_matrix[1][1] 0.016259 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 201 1 NDP NDP . D 3 CO A 1 202 1 CO CO . E 4 RPM A 1 203 1 RPM LIG . F 5 PO4 A 1 204 1 PO4 PO4 . G 5 PO4 A 1 205 2 PO4 PO4 . H 5 PO4 A 1 206 5 PO4 PO4 . I 2 NDP B 1 201 2 NDP NDP . J 3 CO B 1 202 2 CO CO . K 4 RPM B 1 203 2 RPM LIG . L 5 PO4 B 1 204 4 PO4 PO4 . M 6 SO4 B 1 205 1 SO4 SO4 . N 7 HOH A 1 301 137 HOH HOH . N 7 HOH A 2 302 132 HOH HOH . N 7 HOH A 3 303 58 HOH HOH . N 7 HOH A 4 304 142 HOH HOH . N 7 HOH A 5 305 11 HOH HOH . N 7 HOH A 6 306 135 HOH HOH . N 7 HOH A 7 307 76 HOH HOH . N 7 HOH A 8 308 85 HOH HOH . N 7 HOH A 9 309 35 HOH HOH . N 7 HOH A 10 310 18 HOH HOH . N 7 HOH A 11 311 8 HOH HOH . N 7 HOH A 12 312 91 HOH HOH . N 7 HOH A 13 313 138 HOH HOH . N 7 HOH A 14 314 51 HOH HOH . N 7 HOH A 15 315 101 HOH HOH . N 7 HOH A 16 316 73 HOH HOH . N 7 HOH A 17 317 125 HOH HOH . N 7 HOH A 18 318 106 HOH HOH . N 7 HOH A 19 319 3 HOH HOH . N 7 HOH A 20 320 97 HOH HOH . N 7 HOH A 21 321 10 HOH HOH . N 7 HOH A 22 322 110 HOH HOH . N 7 HOH A 23 323 112 HOH HOH . N 7 HOH A 24 324 55 HOH HOH . N 7 HOH A 25 325 13 HOH HOH . N 7 HOH A 26 326 4 HOH HOH . N 7 HOH A 27 327 70 HOH HOH . N 7 HOH A 28 328 74 HOH HOH . N 7 HOH A 29 329 1 HOH HOH . N 7 HOH A 30 330 86 HOH HOH . N 7 HOH A 31 331 141 HOH HOH . N 7 HOH A 32 332 31 HOH HOH . N 7 HOH A 33 333 22 HOH HOH . N 7 HOH A 34 334 102 HOH HOH . N 7 HOH A 35 335 64 HOH HOH . N 7 HOH A 36 336 130 HOH HOH . N 7 HOH A 37 337 131 HOH HOH . N 7 HOH A 38 338 123 HOH HOH . N 7 HOH A 39 339 139 HOH HOH . N 7 HOH A 40 340 140 HOH HOH . N 7 HOH A 41 341 128 HOH HOH . N 7 HOH A 42 342 107 HOH HOH . N 7 HOH A 43 343 127 HOH HOH . N 7 HOH A 44 344 39 HOH HOH . N 7 HOH A 45 345 21 HOH HOH . N 7 HOH A 46 346 133 HOH HOH . N 7 HOH A 47 347 124 HOH HOH . O 7 HOH B 1 301 148 HOH HOH . O 7 HOH B 2 302 118 HOH HOH . O 7 HOH B 3 303 149 HOH HOH . O 7 HOH B 4 304 94 HOH HOH . O 7 HOH B 5 305 136 HOH HOH . O 7 HOH B 6 306 129 HOH HOH . O 7 HOH B 7 307 143 HOH HOH . O 7 HOH B 8 308 17 HOH HOH . O 7 HOH B 9 309 79 HOH HOH . O 7 HOH B 10 310 75 HOH HOH . O 7 HOH B 11 311 99 HOH HOH . O 7 HOH B 12 312 71 HOH HOH . O 7 HOH B 13 313 144 HOH HOH . O 7 HOH B 14 314 93 HOH HOH . O 7 HOH B 15 315 2 HOH HOH . O 7 HOH B 16 316 116 HOH HOH . O 7 HOH B 17 317 7 HOH HOH . O 7 HOH B 18 318 24 HOH HOH . O 7 HOH B 19 319 14 HOH HOH . O 7 HOH B 20 320 146 HOH HOH . O 7 HOH B 21 321 15 HOH HOH . O 7 HOH B 22 322 122 HOH HOH . O 7 HOH B 23 323 117 HOH HOH . O 7 HOH B 24 324 78 HOH HOH . O 7 HOH B 25 325 36 HOH HOH . O 7 HOH B 26 326 95 HOH HOH . O 7 HOH B 27 327 92 HOH HOH . O 7 HOH B 28 328 151 HOH HOH . O 7 HOH B 29 329 20 HOH HOH . O 7 HOH B 30 330 59 HOH HOH . O 7 HOH B 31 331 90 HOH HOH . O 7 HOH B 32 332 6 HOH HOH . O 7 HOH B 33 333 84 HOH HOH . O 7 HOH B 34 334 147 HOH HOH . O 7 HOH B 35 335 150 HOH HOH . O 7 HOH B 36 336 145 HOH HOH . O 7 HOH B 37 337 38 HOH HOH . O 7 HOH B 38 338 134 HOH HOH . O 7 HOH B 39 339 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . I 2 46.03 -0.738 10.371 1 18.95 ? PA NDP 201 B 1 HETATM 2 O O1A NDP . . . I 2 45.46 0.073 11.507 1 18.28 ? O1A NDP 201 B 1 HETATM 3 O O2A NDP . . . I 2 44.922 -1.546 9.761 1 17.27 -1 O2A NDP 201 B 1 HETATM 4 O O5B NDP . . . I 2 46.594 0.306 9.246 1 26.15 ? O5B NDP 201 B 1 HETATM 5 C C5B NDP . . . I 2 47.636 1.156 9.62 1 26.05 ? C5B NDP 201 B 1 HETATM 6 C C4B NDP . . . I 2 47.933 2.047 8.397 1 29.52 ? C4B NDP 201 B 1 HETATM 7 O O4B NDP . . . I 2 46.98 2.944 8.211 1 29.71 ? O4B NDP 201 B 1 HETATM 8 C C3B NDP . . . I 2 49.23 2.845 8.551 1 23.47 ? C3B NDP 201 B 1 HETATM 9 O O3B NDP . . . I 2 50.282 2.067 8.188 1 35.82 ? O3B NDP 201 B 1 HETATM 10 C C2B NDP . . . I 2 48.952 3.985 7.539 1 28.64 ? C2B NDP 201 B 1 HETATM 11 O O2B NDP . . . I 2 49.087 3.483 6.142 1 23.07 ? O2B NDP 201 B 1 HETATM 12 C C1B NDP . . . I 2 47.711 4.31 7.779 1 29.9 ? C1B NDP 201 B 1 HETATM 13 N N9A NDP . . . I 2 47.679 5.137 8.952 1 23.98 ? N9A NDP 201 B 1 HETATM 14 C C8A NDP . . . I 2 47.878 5.007 10.263 1 23.06 ? C8A NDP 201 B 1 HETATM 15 N N7A NDP . . . I 2 47.703 6.192 10.828 1 21.88 ? N7A NDP 201 B 1 HETATM 16 C C5A NDP . . . I 2 47.391 7.058 9.86 1 23.49 ? C5A NDP 201 B 1 HETATM 17 C C6A NDP . . . I 2 47.109 8.391 9.888 1 24.91 ? C6A NDP 201 B 1 HETATM 18 N N6A NDP . . . I 2 47.027 9.401 10.92 1 22.08 ? N6A NDP 201 B 1 HETATM 19 N N1A NDP . . . I 2 46.827 9.014 8.759 1 26.97 ? N1A NDP 201 B 1 HETATM 20 C C2A NDP . . . I 2 46.818 8.357 7.575 1 28.08 ? C2A NDP 201 B 1 HETATM 21 N N3A NDP . . . I 2 47.1 7.039 7.555 1 25.52 ? N3A NDP 201 B 1 HETATM 22 C C4A NDP . . . I 2 47.381 6.402 8.693 1 24.93 ? C4A NDP 201 B 1 HETATM 23 O O3 NDP . . . I 2 47.316 -1.684 10.859 1 27.66 ? O3 NDP 201 B 1 HETATM 24 P PN NDP . . . I 2 47.573 -2.509 12.281 1 27.1 ? PN NDP 201 B 1 HETATM 25 O O1N NDP . . . I 2 47.54 -1.592 13.471 1 30 ? O1N NDP 201 B 1 HETATM 26 O O2N NDP . . . I 2 48.919 -3.186 12.271 1 29.37 -1 O2N NDP 201 B 1 HETATM 27 O O5D NDP . . . I 2 46.403 -3.643 12.469 1 35.96 ? O5D NDP 201 B 1 HETATM 28 C C5D NDP . . . I 2 46.295 -4.692 11.552 1 29.6 ? C5D NDP 201 B 1 HETATM 29 C C4D NDP . . . I 2 45.768 -5.923 12.315 1 23.11 ? C4D NDP 201 B 1 HETATM 30 O O4D NDP . . . I 2 44.531 -5.757 12.751 1 21.11 ? O4D NDP 201 B 1 HETATM 31 C C3D NDP . . . I 2 45.725 -7.169 11.416 1 21.96 ? C3D NDP 201 B 1 HETATM 32 O O3D NDP . . . I 2 46.405 -8.156 12.068 1 22.07 ? O3D NDP 201 B 1 HETATM 33 C C2D NDP . . . I 2 44.224 -7.444 11.256 1 17.75 ? C2D NDP 201 B 1 HETATM 34 O O2D NDP . . . I 2 43.935 -8.862 10.939 1 26.13 ? O2D NDP 201 B 1 HETATM 35 C C1D NDP . . . I 2 43.782 -7.111 12.449 1 16.95 ? C1D NDP 201 B 1 HETATM 36 N N1N NDP . . . I 2 42.376 -6.835 12.413 1 19.84 ? N1N NDP 201 B 1 HETATM 37 C C2N NDP . . . I 2 41.548 -7.413 13.385 1 19.31 ? C2N NDP 201 B 1 HETATM 38 C C3N NDP . . . I 2 40.169 -6.94 13.655 1 16.3 ? C3N NDP 201 B 1 HETATM 39 C C7N NDP . . . I 2 39.321 -7.671 14.697 1 17.04 ? C7N NDP 201 B 1 HETATM 40 O O7N NDP . . . I 2 38.16 -7.4 14.824 1 16.11 ? O7N NDP 201 B 1 HETATM 41 N N7N NDP . . . I 2 39.927 -8.695 15.521 1 13.21 ? N7N NDP 201 B 1 HETATM 42 C C4N NDP . . . I 2 39.476 -6.052 12.608 1 17.71 ? C4N NDP 201 B 1 HETATM 43 C C5N NDP . . . I 2 40.352 -5.664 11.376 1 13.34 ? C5N NDP 201 B 1 HETATM 44 C C6N NDP . . . I 2 41.85 -5.959 11.41 1 21.57 ? C6N NDP 201 B 1 HETATM 45 P P2B NDP . . . I 2 50.543 3.435 5.378 1 28.2 ? P2B NDP 201 B 1 HETATM 46 O O1X NDP . . . I 2 50.304 2.887 4.002 1 22.93 ? O1X NDP 201 B 1 HETATM 47 O O2X NDP . . . I 2 51.457 2.515 6.148 1 24.86 -1 O2X NDP 201 B 1 HETATM 48 O O3X NDP . . . I 2 51.178 4.792 5.321 1 26.81 -1 O3X NDP 201 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #